Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:27:27 (1669492): wrapper (7.7.26015): starting
17:27:27 (1669492): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 17:27:27] Arguments: --nthreads 8
[2025-07-27 17:27:27] Threads: 8
[2025-07-27 17:27:27] Checking for CVMFS
[2025-07-27 17:27:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:27:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:27:27] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:27:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:27:27] 2.12.6.0 2533812 18901 351180 148825 2 292 21183086 32935936 18810 16776704 0 62778054 99.594 101711934 22657 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 17:27:27] CVMFS is ok
[2025-07-27 17:27:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:27:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:27:27] Further information can be found at the LHC@home message board.
[2025-07-27 17:27:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:27:27] Checking for apptainer binary...
[2025-07-27 17:27:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:27:27] Running /usr/bin/apptainer --version
[2025-07-27 17:27:27] apptainer version 1.4.1-1.el9
[2025-07-27 17:27:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:27:28] c6-12-29-3.aglt2.org
[2025-07-27 17:27:28] apptainer works
[2025-07-27 17:27:28] Set ATHENA_PROC_NUMBER=8
[2025-07-27 17:27:28] Set ATHENA_CORE_NUMBER=8
[2025-07-27 17:27:28] Starting ATLAS job with PandaID=6747525641
[2025-07-27 17:27:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:25:00]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:25:00] 2025-07-28 00:24:26,891 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:25:00] 2025-07-28 00:24:26,891 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:25:00] 2025-07-28 00:24:26,896 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:25:00] 2025-07-28 00:24:26,896 | INFO     | sum of square deviations: 1605452305.3294806
[2025-07-27 20:25:00] 2025-07-28 00:24:26,898 | INFO     | sum of deviations: 1889181165.9826634
[2025-07-27 20:25:00] 2025-07-28 00:24:26,898 | INFO     | mean x: 1753656957.098266
[2025-07-27 20:25:00] 2025-07-28 00:24:26,898 | INFO     | mean y: 2128796.9421965317
[2025-07-27 20:25:00] 2025-07-28 00:24:26,898 | INFO     | -- intersect: -2061448977.3378074
[2025-07-27 20:25:00] 2025-07-28 00:24:26,898 | INFO     | intersect: -2061448977.3378074
[2025-07-27 20:25:00] 2025-07-28 00:24:26,898 | INFO     | chi2: 1.8144932416355102
[2025-07-27 20:25:00] 2025-07-28 00:24:26,899 | INFO     | sum of square deviations: 1470236350.2797577
[2025-07-27 20:25:00] 2025-07-28 00:24:26,900 | INFO     | sum of deviations: 2896901258.8452396
[2025-07-27 20:25:00] 2025-07-28 00:24:26,900 | INFO     | mean x: 1753656804.6011906
[2025-07-27 20:25:00] 2025-07-28 00:24:26,900 | INFO     | mean y: 2129921.773809524
[2025-07-27 20:25:00] 2025-07-28 00:24:26,900 | INFO     | -- intersect: -3453212890.193158
[2025-07-27 20:25:00] 2025-07-28 00:24:26,900 | INFO     | intersect: -3453212890.193158
[2025-07-27 20:25:00] 2025-07-28 00:24:26,901 | INFO     | chi2: 1.8148906615580436
[2025-07-27 20:25:00] 2025-07-28 00:24:26,901 | INFO     | current chi2=1.8148906615580436 (change=-0.0219025297760368 %)
[2025-07-27 20:25:00] 2025-07-28 00:24:26,901 | INFO     | right removable region: 167
[2025-07-27 20:25:00] 2025-07-28 00:24:26,901 | INFO     | sum of square deviations: 1470225980.2797577
[2025-07-27 20:25:00] 2025-07-28 00:24:26,902 | INFO     | sum of deviations: -23519843224.62494
[2025-07-27 20:25:00] 2025-07-28 00:24:26,903 | INFO     | mean x: 1753657109.6011906
[2025-07-27 20:25:00] 2025-07-28 00:24:26,903 | INFO     | mean y: 2157176.125
[2025-07-27 20:25:00] 2025-07-28 00:24:26,903 | INFO     | -- intersect: 28056171212.60706
[2025-07-27 20:25:00] 2025-07-28 00:24:26,903 | INFO     | intersect: 28056171212.60706
[2025-07-27 20:25:00] 2025-07-28 00:24:26,903 | INFO     | chi2: 0.2308914462245122
[2025-07-27 20:25:00] 2025-07-28 00:24:26,903 | INFO     | current chi2=0.2308914462245122 (change=87.2751553477049 %)
[2025-07-27 20:25:00] 2025-07-28 00:24:26,904 | INFO     | sum of square deviations: 1342823758.4294498
[2025-07-27 20:25:00] 2025-07-28 00:24:26,905 | INFO     | sum of deviations: -22341340172.171776
[2025-07-27 20:25:00] 2025-07-28 00:24:26,905 | INFO     | mean x: 1753657262.0981596
[2025-07-27 20:25:00] 2025-07-28 00:24:26,905 | INFO     | mean y: 2155716.7607361963
[2025-07-27 20:25:00] 2025-07-28 00:24:26,905 | INFO     | -- intersect: 29178771927.184147
[2025-07-27 20:25:00] 2025-07-28 00:24:26,905 | INFO     | intersect: 29178771927.184147
[2025-07-27 20:25:00] 2025-07-28 00:24:26,906 | INFO     | chi2: 0.20016691202996723
[2025-07-27 20:25:00] 2025-07-28 00:24:26,906 | INFO     | current chi2=0.20016691202996723 (change=13.306917470069163 %)
[2025-07-27 20:25:00] 2025-07-28 00:24:26,906 | INFO     | left removable region: 20
[2025-07-27 20:25:00] 2025-07-28 00:24:26,906 | INFO     | sum of square deviations: 984947857.850343
[2025-07-27 20:25:00] 2025-07-28 00:24:26,907 | INFO     | sum of deviations: -13291047642.30612
[2025-07-27 20:25:00] 2025-07-28 00:24:26,907 | INFO     | mean x: 1753657384.0884354
[2025-07-27 20:25:00] 2025-07-28 00:24:26,907 | INFO     | mean y: 2147822.4081632653
[2025-07-27 20:25:00] 2025-07-28 00:24:26,907 | INFO     | -- intersect: 23666287659.283493
[2025-07-27 20:25:00] 2025-07-28 00:24:26,908 | INFO     | intersect: 23666287659.283493
[2025-07-27 20:25:00] 2025-07-28 00:24:26,908 | INFO     | chi2: 0.182745399275987
[2025-07-27 20:25:00] 2025-07-28 00:24:26,908 | INFO     | -- intersect: 23666287659.283493
[2025-07-27 20:25:00] 2025-07-28 00:24:26,908 | INFO     | current memory leak: -13.49 B/s (using 147 data points, chi2=0.18)
[2025-07-27 20:25:00] 2025-07-28 00:24:26,909 | INFO     | could have reported an average CPU frequency of 2466 MHz (9 samples)
[2025-07-27 20:25:00] 2025-07-28 00:24:26,909 | INFO     | ..............................
[2025-07-27 20:25:00] 2025-07-28 00:24:26,909 | INFO     | . Timing measurements:
[2025-07-27 20:25:00] 2025-07-28 00:24:26,909 | INFO     | . get job = 0 s
[2025-07-27 20:25:00] 2025-07-28 00:24:26,909 | INFO     | . initial setup = 3 s
[2025-07-27 20:25:00] 2025-07-28 00:24:26,909 | INFO     | . payload setup = 13 s
[2025-07-27 20:25:00] 2025-07-28 00:24:26,910 | INFO     | . stage-in = 0 s
[2025-07-27 20:25:00] 2025-07-28 00:24:26,910 | INFO     | . payload execution = 10549 s
[2025-07-27 20:25:00] 2025-07-28 00:24:26,910 | INFO     | . stage-out = 0 s
[2025-07-27 20:25:00] 2025-07-28 00:24:26,910 | INFO     | . log creation = 0 s
[2025-07-27 20:25:00] 2025-07-28 00:24:26,910 | INFO     | ..............................
[2025-07-27 20:25:00] 2025-07-28 00:24:26,918 | INFO     | sufficient remaining disk space (95685705728 B)
[2025-07-27 20:25:00] 2025-07-28 00:24:26,919 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 20:25:00] 2025-07-28 00:24:26,920 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6747525641: 3434768 B (within 2537553920 B limit)
[2025-07-27 20:25:00] 2025-07-28 00:24:26,920 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6747525641/HITS.45743349._052188.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 20:25:00] 2025-07-28 00:24:26,920 | INFO     | total size of present files: 0 B (workdir size: 3434768 B)
[2025-07-27 20:25:00] 2025-07-28 00:24:26,920 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6747525641/HITS.45743349._052188.pool.root.1 since it does not exist
[2025-07-27 20:25:00] 2025-07-28 00:24:27,063 | INFO     | 
[2025-07-27 20:25:00] 2025-07-28 00:24:27,063 | INFO     | job summary report
[2025-07-27 20:25:00] 2025-07-28 00:24:27,063 | INFO     | --------------------------------------------------
[2025-07-27 20:25:00] 2025-07-28 00:24:27,063 | INFO     | PanDA job id: 6747525641
[2025-07-27 20:25:00] 2025-07-28 00:24:27,063 | INFO     | task id: 45743349
[2025-07-27 20:25:00] 2025-07-28 00:24:27,063 | INFO     | errors: (none)
[2025-07-27 20:25:00] 2025-07-28 00:24:27,064 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:25:00] 2025-07-28 00:24:27,064 | INFO     | pilot state: finished 
[2025-07-27 20:25:00] 2025-07-28 00:24:27,064 | INFO     | transexitcode: 0
[2025-07-27 20:25:00] 2025-07-28 00:24:27,064 | INFO     | exeerrorcode: 0
[2025-07-27 20:25:00] 2025-07-28 00:24:27,064 | INFO     | exeerrordiag: 
[2025-07-27 20:25:00] 2025-07-28 00:24:27,065 | INFO     | exitcode: 0
[2025-07-27 20:25:00] 2025-07-28 00:24:27,065 | INFO     | exitmsg: OK
[2025-07-27 20:25:00] 2025-07-28 00:24:27,065 | INFO     | cpuconsumptiontime: 54742 s
[2025-07-27 20:25:00] 2025-07-28 00:24:27,065 | INFO     | nevents: 400
[2025-07-27 20:25:00] 2025-07-28 00:24:27,065 | INFO     | neventsw: 0
[2025-07-27 20:25:00] 2025-07-28 00:24:27,065 | INFO     | pid: 1680298
[2025-07-27 20:25:00] 2025-07-28 00:24:27,066 | INFO     | pgrp: 1680298
[2025-07-27 20:25:00] 2025-07-28 00:24:27,066 | INFO     | corecount: 8
[2025-07-27 20:25:00] 2025-07-28 00:24:27,066 | INFO     | event service: False
[2025-07-27 20:25:00] 2025-07-28 00:24:27,066 | INFO     | sizes: {0: 2397304, 1: 2397503, 10: 2397765, 11: 2397793, 10566: 2426860, 10567: 2436042, 10578: 2436272}
[2025-07-27 20:25:00] 2025-07-28 00:24:27,066 | INFO     | --------------------------------------------------
[2025-07-27 20:25:00] 2025-07-28 00:24:27,066 | INFO     | 
[2025-07-27 20:25:00] 2025-07-28 00:24:27,066 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 20:25:00] 2025-07-28 00:24:27,096 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,097 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,097 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,097 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,097 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,097 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,097 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,098 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,098 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,099 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,099 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,099 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,099 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,099 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,099 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,099 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,099 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,099 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:25:00] 2025-07-28 00:24:27,099 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,099 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:25:00] 2025-07-28 00:24:27,100 | INFO     | job 6747525641 has completed (purged errors)
[2025-07-27 20:25:00] 2025-07-28 00:24:27,100 | INFO     | overall cleanup function is called
[2025-07-27 20:25:00] 2025-07-28 00:24:27,530 | INFO     | number of running child processes to parent process 1680298: 1
[2025-07-27 20:25:00] 2025-07-28 00:24:27,531 | INFO     | maximum number of monitored processes: 6
[2025-07-27 20:25:00] 2025-07-28 00:24:27,531 | INFO     | aborting job monitoring since job object (job id=6747525641) has expired
[2025-07-27 20:25:00] 2025-07-28 00:24:28,121 | INFO     | --- collectZombieJob: --- 10, [1680298]
[2025-07-27 20:25:00] 2025-07-28 00:24:28,121 | INFO     | zombie collector waiting for pid 1680298
[2025-07-27 20:25:00] 2025-07-28 00:24:28,122 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:25:00] 2025-07-28 00:24:28,122 | INFO     | collected zombie processes
[2025-07-27 20:25:00] 2025-07-28 00:24:28,122 | INFO     | will attempt to kill all subprocesses of pid=1680298
[2025-07-27 20:25:00] 2025-07-28 00:24:28,547 | INFO     | process IDs to be killed: [1680298] (in reverse order)
[2025-07-27 20:25:00] 2025-07-28 00:24:28,685 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:25:00] 2025-07-28 00:24:28,685 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:25:00] 2025-07-28 00:24:28,705 | INFO     | did not find any defunct processes belonging to 1680298
[2025-07-27 20:25:00] 2025-07-28 00:24:28,723 | INFO     | did not find any defunct processes belonging to 1680298
[2025-07-27 20:25:00] 2025-07-28 00:24:28,723 | INFO     | ready for new job
[2025-07-27 20:25:00] 2025-07-28 00:24:28,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:25:00] 2025-07-28 00:24:28,725 | INFO     | ***************************************
[2025-07-27 20:25:00] 2025-07-28 00:24:28,725 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:25:00] 2025-07-28 00:24:28,725 | INFO     | ***************************************
[2025-07-27 20:25:00] 2025-07-28 00:24:28,725 | INFO     | 
[2025-07-27 20:25:00] 2025-07-28 00:24:28,748 | INFO     | architecture information:
[2025-07-27 20:25:00] 2025-07-28 00:24:28,750 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:25:00] 2025-07-28 00:24:28,771 | INFO     | cat /etc/os-release:
[2025-07-27 20:25:00] NAME="CentOS Linux"
[2025-07-27 20:25:00] VERSION="7 (Core)"
[2025-07-27 20:25:00] ID="centos"
[2025-07-27 20:25:00] ID_LIKE="rhel fedora"
[2025-07-27 20:25:00] VERSION_ID="7"
[2025-07-27 20:25:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:25:00] ANSI_COLOR="0;31"
[2025-07-27 20:25:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:25:00] HOME_URL="https://www.centos.org/"
[2025-07-27 20:25:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:25:00] 
[2025-07-27 20:25:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:25:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:25:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:25:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:25:00] 
[2025-07-27 20:25:00] 2025-07-28 00:24:28,772 | INFO     | ***************************************
[2025-07-27 20:25:00] 2025-07-28 00:24:29,275 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 20:25:00] 2025-07-28 00:24:29,299 | INFO     | sufficient remaining disk space (95686754304 B)
[2025-07-27 20:25:00] 2025-07-28 00:24:29,299 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:25:00] 2025-07-28 00:24:29,299 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:25:00] 2025-07-28 00:24:29,300 | INFO     | update_server=False
[2025-07-27 20:25:00] 2025-07-28 00:24:29,300 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:25:00] 2025-07-28 00:24:29,300 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:25:00] 2025-07-28 00:24:29,300 | INFO     | aborting loop
[2025-07-27 20:25:00] 2025-07-28 00:24:29,464 | INFO     | all data control threads have been joined
[2025-07-27 20:25:00] 2025-07-28 00:24:29,735 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:25:00] 2025-07-28 00:24:30,304 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:30,306 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:30,470 | INFO     | [data] control thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:30,616 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:30,696 | INFO     | all payload control threads have been joined
[2025-07-27 20:25:00] 2025-07-28 00:24:30,941 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:30,999 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:31,006 | INFO     | all job control threads have been joined
[2025-07-27 20:25:00] 2025-07-28 00:24:31,081 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:31,344 | INFO     | [job] validate thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:31,364 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:31,613 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:31,702 | INFO     | [payload] control thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:31,744 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:31,875 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:25:00] 2025-07-28 00:24:32,012 | INFO     | [job] control thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:32,077 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:25:00] 2025-07-28 00:24:33,083 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:35,884 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:39,924 | INFO     | job.realtimelogging is not enabled
[2025-07-27 20:25:00] 2025-07-28 00:24:40,929 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:25:00] 2025-07-28 00:24:42,882 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140483158341440)>', '<ExcThread(monitor, started 140482491422464)>']
[2025-07-27 20:25:00] 2025-07-28 00:24:47,908 | INFO     | all workflow threads have been joined
[2025-07-27 20:25:00] 2025-07-28 00:24:47,908 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:25:00] 2025-07-28 00:24:47,909 | INFO     | traces error code: 0
[2025-07-27 20:25:00] 2025-07-28 00:24:47,909 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:25:00] 2025-07-28 00:25:00,074 | INFO     | PID=1673263 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:25:00] 2025-07-28 00:25:00,075 | INFO     | .. there are 16 such processes running
[2025-07-27 20:25:00] 2025-07-28 00:25:00,075 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:25:00] 2025-07-28 00:25:00,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:25:00] 2025-07-28 00:25:00,075 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:25:00] 2025-07-28 00:25:00,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:25:00] 2025-07-28 00:25:00,075 | INFO     | [monitor] control thread has ended
[2025-07-27 20:25:00] 2025-07-28 00:25:00,291 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:25:00] 2025-07-28 00:25:00,303 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:25:00] 2025-07-28 00:25:00,310 [wrapper] pilotpid: 1673263
[2025-07-27 20:25:00] 2025-07-28 00:25:00,317 [wrapper] Pilot exit status: 0
[2025-07-27 20:25:00] 2025-07-28 00:25:00,344 [wrapper] pandaids: 6747525641
[2025-07-27 20:25:00] 2025-07-28 00:25:00,443 [wrapper] cleanup supervisor_pilot 2053752 1673264
[2025-07-27 20:25:00] 2025-07-28 00:25:00,450 [wrapper] Test setup, not cleaning
[2025-07-27 20:25:00] 2025-07-28 00:25:00,454 [wrapper] apfmon messages muted
[2025-07-27 20:25:00] 2025-07-28 00:25:00,458 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:25:00] 2025-07-28 00:25:00,468 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:25:00]  *** Error codes and diagnostics ***
[2025-07-27 20:25:00]     "exeErrorCode": 0,
[2025-07-27 20:25:00]     "exeErrorDiag": "",
[2025-07-27 20:25:00]     "pilotErrorCode": 0,
[2025-07-27 20:25:00]     "pilotErrorDiag": "",
[2025-07-27 20:25:00]  *** Listing of results directory ***
[2025-07-27 20:25:00] total 352868
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 12:02 pilot3.tar.gz
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 12:09 queuedata.json
[2025-07-27 20:25:00] -rwx------. 1 boincer umatlas     36292 Jul 27 12:11 runpilot2-wrapper.sh
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:25:00] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:27 run_atlas
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:27 job.xml
[2025-07-27 20:25:00] -rw-r--r--. 2 boincer umatlas 148180019 Jul 27 17:27 EVNT.45743347._002873.pool.root.1
[2025-07-27 20:25:00] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:27 start_atlas.sh
[2025-07-27 20:25:00] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:27 shared
[2025-07-27 20:25:00] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 17:27 input.tar.gz
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:27 boinc_lockfile
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 17:27 pandaJob.out
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas    980117 Jul 27 17:27 agis_schedconf.cvmfs.json
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:27 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:25:00] drwx------. 4 boincer umatlas      4096 Jul 27 17:27 pilot3
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas      6860 Jul 27 20:22 init_data.xml
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas 206779299 Jul 27 20:23 HITS.45743349._052188.pool.root.1
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas       530 Jul 27 20:23 boinc_task_state.xml
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas        95 Jul 27 20:24 pilot_heartbeat.json
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas      1038 Jul 27 20:24 memory_monitor_summary.json
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas    354114 Jul 27 20:24 log.45743349._052188.job.log.tgz.1
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas      7830 Jul 27 20:24 heartbeat.json
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas        28 Jul 27 20:24 wrapper_checkpoint.txt
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 20:24 boinc_mmap_file
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas       823 Jul 27 20:25 pilotlog.txt
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas    901023 Jul 27 20:25 log.45743349._052188.job.log.1
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas       357 Jul 27 20:25 output.list
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas       620 Jul 27 20:25 runtime_log
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas   1269760 Jul 27 20:25 result.tar.gz
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas      8671 Jul 27 20:25 runtime_log.err
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas       657 Jul 27 20:25 FanNDmc9I07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7nVLDmLNpPhm.diag
[2025-07-27 20:25:00] -rw-r--r--. 1 boincer umatlas     21420 Jul 27 20:25 stderr.txt
[2025-07-27 20:25:00] HITS file was successfully produced:
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas 206779299 Jul 27 20:23 shared/HITS.pool.root.1
[2025-07-27 20:25:00]  *** Contents of shared directory: ***
[2025-07-27 20:25:00] total 348436
[2025-07-27 20:25:00] -rw-r--r--. 2 boincer umatlas 148180019 Jul 27 17:27 ATLAS.root_0
[2025-07-27 20:25:00] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:27 start_atlas.sh
[2025-07-27 20:25:00] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 17:27 input.tar.gz
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas 206779299 Jul 27 20:23 HITS.pool.root.1
[2025-07-27 20:25:00] -rw-------. 1 boincer umatlas   1269760 Jul 27 20:25 result.tar.gz
20:25:02 (1669492): run_atlas exited; CPU time 55179.912684
20:25:02 (1669492): called boinc_finish(0)

</stderr_txt>
]]>

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