Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:21:16 (4098367): wrapper (7.7.26015): starting
17:21:16 (4098367): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 17:21:17] Arguments: --nthreads 8
[2025-07-27 17:21:17] Threads: 8
[2025-07-27 17:21:17] Checking for CVMFS
[2025-07-27 17:21:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:21:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:21:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:21:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:21:17] 2.13.1.0 679170 14673 192060 148825 1 105 39077911 40960001 13421 16776704 0 38753348 99.924 18975663 47306 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 17:21:17] CVMFS is ok
[2025-07-27 17:21:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:21:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:21:17] Further information can be found at the LHC@home message board.
[2025-07-27 17:21:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:21:17] Checking for apptainer binary...
[2025-07-27 17:21:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:21:17] Running /usr/bin/apptainer --version
[2025-07-27 17:21:17] apptainer version 1.4.1-1.el9
[2025-07-27 17:21:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:21:17] c-212-10.aglt2.org
[2025-07-27 17:21:17] apptainer works
[2025-07-27 17:21:17] Set ATHENA_PROC_NUMBER=8
[2025-07-27 17:21:17] Set ATHENA_CORE_NUMBER=8
[2025-07-27 17:21:17] Starting ATLAS job with PandaID=6747525121
[2025-07-27 17:21:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:57:04]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:57:04]  storage_token=
[2025-07-27 18:57:04]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6747525121/log.45743349._052034.job.log.tgz.1
[2025-07-27 18:57:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/17/log.45743349._052034.job.log.tgz.1
[2025-07-27 18:57:04]  workdir=None
[2025-07-27 18:57:04] ]
[2025-07-27 18:57:04] 2025-07-27 22:56:20,715 | INFO     | transferring file log.45743349._052034.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6747525121/log.45743349._052034.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 18:57:04] 2025-07-27 22:56:20,715 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6747525121/log.45743349._052034.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._052034.job
[2025-07-27 18:57:04] 2025-07-27 22:56:20,738 | WARNING  | process 4111702 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 18:57:04] 2025-07-27 22:56:20,738 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747525121/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:57:04] 2025-07-27 22:56:20,749 | INFO     | adding to output.list: log.45743349._052034.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/17/log.45743349._052034.job.log.tg
[2025-07-27 18:57:04] 2025-07-27 22:56:20,750 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:57:04] 2025-07-27 22:56:20,750 | INFO     | summary of transferred files:
[2025-07-27 18:57:04] 2025-07-27 22:56:20,750 | INFO     |  -- lfn=log.45743349._052034.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:57:04] 2025-07-27 22:56:20,750 | INFO     | stage-out finished correctly
[2025-07-27 18:57:04] 2025-07-27 22:56:21,244 | INFO     | number of running child processes to parent process 4111702: 1
[2025-07-27 18:57:04] 2025-07-27 22:56:21,244 | INFO     | maximum number of monitored processes: 6
[2025-07-27 18:57:04] 2025-07-27 22:56:23,751 | INFO     | monitor loop #414: job 0:6747525121 is in state 'finished'
[2025-07-27 18:57:04] 2025-07-27 22:56:23,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:57:04] 2025-07-27 22:56:24,294 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:57:04] 2025-07-27 22:56:24,405 | INFO     | job 6747525121 has state=finished
[2025-07-27 18:57:04] 2025-07-27 22:56:24,405 | INFO     | preparing for final server update for job 6747525121 in state='finished'
[2025-07-27 18:57:04] 2025-07-27 22:56:24,405 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:57:04] 2025-07-27 22:56:24,405 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:57:04] 2025-07-27 22:56:24,406 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:57:04] 2025-07-27 22:56:24,406 | INFO     | job 6747525121 has finished - writing final server update
[2025-07-27 18:57:04] 2025-07-27 22:56:24,406 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:57:04] 2025-07-27 22:56:24,407 | INFO     | executing command: lscpu
[2025-07-27 18:57:04] 2025-07-27 22:56:24,487 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:57:04] 2025-07-27 22:56:26,255 | INFO     | monitor loop #415: job 0:6747525121 is in state 'finished'
[2025-07-27 18:57:04] 2025-07-27 22:56:26,256 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:57:04] 2025-07-27 22:56:28,761 | INFO     | monitor loop #416: job 0:6747525121 is in state 'finished'
[2025-07-27 18:57:04] 2025-07-27 22:56:28,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:57:04] 2025-07-27 22:56:29,523 | INFO     | PID=4102161 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 18:57:04] 2025-07-27 22:56:29,523 | INFO     | .. there are 15 such processes running
[2025-07-27 18:57:04] 2025-07-27 22:56:31,265 | INFO     | monitor loop #417: job 0:6747525121 is in state 'finished'
[2025-07-27 18:57:04] 2025-07-27 22:56:31,266 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:57:04] 2025-07-27 22:56:31,477 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:57:04] 2025-07-27 22:56:31,483 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2823.0908541666668
[2025-07-27 18:57:04] 2025-07-27 22:56:31,500 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747525121/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:57:04] 2025-07-27 22:56:31,501 | INFO     | extracted standard info from prmon json
[2025-07-27 18:57:04] 2025-07-27 22:56:31,502 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:57:04] 2025-07-27 22:56:31,502 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:57:04] 2025-07-27 22:56:31,502 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:57:04] 2025-07-27 22:56:31,502 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:57:04] 2025-07-27 22:56:31,504 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:57:04] 2025-07-27 22:56:31,505 | INFO     | sum of square deviations: 197203697.5
[2025-07-27 18:57:04] 2025-07-27 22:56:31,505 | INFO     | sum of deviations: -20210643921.5
[2025-07-27 18:57:04] 2025-07-27 22:56:31,505 | INFO     | mean x: 1753654219.5
[2025-07-27 18:57:04] 2025-07-27 22:56:31,505 | INFO     | mean y: 2669367.6395348837
[2025-07-27 18:57:04] 2025-07-27 22:56:31,506 | INFO     | -- intersect: 179727904954.31256
[2025-07-27 18:57:04] 2025-07-27 22:56:31,506 | INFO     | intersect: 179727904954.31256
[2025-07-27 18:57:04] 2025-07-27 22:56:31,506 | INFO     | chi2: 0.08680100999870415
[2025-07-27 18:57:04] 2025-07-27 22:56:31,506 | INFO     | -- intersect: 179727904954.31256
[2025-07-27 18:57:04] 2025-07-27 22:56:31,506 | INFO     | current memory leak: -102.49 B/s (using 86 data points, chi2=0.09)
[2025-07-27 18:57:04] 2025-07-27 22:56:31,506 | INFO     | could have reported an average CPU frequency of 2905 MHz (7 samples)
[2025-07-27 18:57:04] 2025-07-27 22:56:31,507 | INFO     | ..............................
[2025-07-27 18:57:04] 2025-07-27 22:56:31,507 | INFO     | . Timing measurements:
[2025-07-27 18:57:04] 2025-07-27 22:56:31,507 | INFO     | . get job = 0 s
[2025-07-27 18:57:04] 2025-07-27 22:56:31,507 | INFO     | . initial setup = 2 s
[2025-07-27 18:57:04] 2025-07-27 22:56:31,507 | INFO     | . payload setup = 8 s
[2025-07-27 18:57:04] 2025-07-27 22:56:31,507 | INFO     | . stage-in = 0 s
[2025-07-27 18:57:04] 2025-07-27 22:56:31,507 | INFO     | . payload execution = 5658 s
[2025-07-27 18:57:04] 2025-07-27 22:56:31,507 | INFO     | . stage-out = 1 s
[2025-07-27 18:57:04] 2025-07-27 22:56:31,507 | INFO     | . log creation = 0 s
[2025-07-27 18:57:04] 2025-07-27 22:56:31,507 | INFO     | ..............................
[2025-07-27 18:57:04] 2025-07-27 22:56:31,599 | INFO     | 
[2025-07-27 18:57:04] 2025-07-27 22:56:31,599 | INFO     | job summary report
[2025-07-27 18:57:04] 2025-07-27 22:56:31,599 | INFO     | --------------------------------------------------
[2025-07-27 18:57:04] 2025-07-27 22:56:31,599 | INFO     | PanDA job id: 6747525121
[2025-07-27 18:57:04] 2025-07-27 22:56:31,599 | INFO     | task id: 45743349
[2025-07-27 18:57:04] 2025-07-27 22:56:31,599 | INFO     | errors: (none)
[2025-07-27 18:57:04] 2025-07-27 22:56:31,599 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:57:04] 2025-07-27 22:56:31,599 | INFO     | pilot state: finished 
[2025-07-27 18:57:04] 2025-07-27 22:56:31,599 | INFO     | transexitcode: 0
[2025-07-27 18:57:04] 2025-07-27 22:56:31,599 | INFO     | exeerrorcode: 0
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | exeerrordiag: 
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | exitcode: 0
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | exitmsg: OK
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | cpuconsumptiontime: 41656 s
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | nevents: 400
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | neventsw: 0
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | pid: 4111702
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | pgrp: 4111702
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | corecount: 8
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | event service: False
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | sizes: {0: 2397475, 1: 2397475, 6: 2397765, 11: 2397793, 5671: 2424306, 5673: 2433304, 5676: 2433488, 5684: 2433682}
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | --------------------------------------------------
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | 
[2025-07-27 18:57:04] 2025-07-27 22:56:31,600 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 18:57:04] 2025-07-27 22:56:31,636 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,636 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,637 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,638 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:57:04] 2025-07-27 22:56:31,638 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,638 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:57:04] 2025-07-27 22:56:31,638 | INFO     | job 6747525121 has completed (purged errors)
[2025-07-27 18:57:04] 2025-07-27 22:56:31,638 | INFO     | overall cleanup function is called
[2025-07-27 18:57:04] 2025-07-27 22:56:32,647 | INFO     | --- collectZombieJob: --- 10, [4111702]
[2025-07-27 18:57:04] 2025-07-27 22:56:32,647 | INFO     | zombie collector waiting for pid 4111702
[2025-07-27 18:57:04] 2025-07-27 22:56:32,647 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:57:04] 2025-07-27 22:56:32,647 | INFO     | collected zombie processes
[2025-07-27 18:57:04] 2025-07-27 22:56:32,648 | INFO     | will attempt to kill all subprocesses of pid=4111702
[2025-07-27 18:57:04] 2025-07-27 22:56:33,085 | INFO     | process IDs to be killed: [4111702] (in reverse order)
[2025-07-27 18:57:04] 2025-07-27 22:56:33,224 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:57:04] 2025-07-27 22:56:33,225 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:57:04] 2025-07-27 22:56:33,242 | INFO     | did not find any defunct processes belonging to 4111702
[2025-07-27 18:57:04] 2025-07-27 22:56:33,260 | INFO     | did not find any defunct processes belonging to 4111702
[2025-07-27 18:57:04] 2025-07-27 22:56:33,261 | INFO     | ready for new job
[2025-07-27 18:57:04] 2025-07-27 22:56:33,261 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:57:04] 2025-07-27 22:56:33,265 | INFO     | ***************************************
[2025-07-27 18:57:04] 2025-07-27 22:56:33,266 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:57:04] 2025-07-27 22:56:33,266 | INFO     | ***************************************
[2025-07-27 18:57:04] 2025-07-27 22:56:33,266 | INFO     | 
[2025-07-27 18:57:04] 2025-07-27 22:56:33,277 | INFO     | architecture information:
[2025-07-27 18:57:04] 2025-07-27 22:56:33,278 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:57:04] 2025-07-27 22:56:33,304 | INFO     | cat /etc/os-release:
[2025-07-27 18:57:04] NAME="CentOS Linux"
[2025-07-27 18:57:04] VERSION="7 (Core)"
[2025-07-27 18:57:04] ID="centos"
[2025-07-27 18:57:04] ID_LIKE="rhel fedora"
[2025-07-27 18:57:04] VERSION_ID="7"
[2025-07-27 18:57:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:57:04] ANSI_COLOR="0;31"
[2025-07-27 18:57:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:57:04] HOME_URL="https://www.centos.org/"
[2025-07-27 18:57:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:57:04] 
[2025-07-27 18:57:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:57:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:57:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:57:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:57:04] 
[2025-07-27 18:57:04] 2025-07-27 22:56:33,304 | INFO     | ***************************************
[2025-07-27 18:57:04] 2025-07-27 22:56:33,808 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 18:57:04] 2025-07-27 22:56:33,838 | INFO     | sufficient remaining disk space (128813367296 B)
[2025-07-27 18:57:04] 2025-07-27 22:56:33,838 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:57:04] 2025-07-27 22:56:33,838 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:57:04] 2025-07-27 22:56:33,838 | INFO     | update_server=False
[2025-07-27 18:57:04] 2025-07-27 22:56:33,838 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:57:04] 2025-07-27 22:56:33,872 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:57:04] 2025-07-27 22:56:34,611 | INFO     | all payload control threads have been joined
[2025-07-27 18:57:04] 2025-07-27 22:56:34,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:57:04] 2025-07-27 22:56:34,779 | INFO     | aborting loop
[2025-07-27 18:57:04] 2025-07-27 22:56:34,810 | INFO     | all data control threads have been joined
[2025-07-27 18:57:04] 2025-07-27 22:56:34,844 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:34,919 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:57:04] 2025-07-27 22:56:35,109 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:35,267 | INFO     | [job] validate thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:35,450 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:35,478 | INFO     | all job control threads have been joined
[2025-07-27 18:57:04] 2025-07-27 22:56:35,617 | INFO     | [payload] control thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:35,723 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:35,785 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:35,819 | INFO     | [data] control thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:35,879 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:35,903 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:35,917 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:36,328 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:36,484 | INFO     | [job] control thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:36,612 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:57:04] 2025-07-27 22:56:37,617 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:38,928 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:44,843 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:57:04] 2025-07-27 22:56:45,849 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:57:04] 2025-07-27 22:56:46,773 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140500386096960)>', '<ExcThread(monitor, started 140499897796352)>']
[2025-07-27 18:57:04] 2025-07-27 22:56:51,799 | INFO     | all workflow threads have been joined
[2025-07-27 18:57:04] 2025-07-27 22:56:51,799 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:57:04] 2025-07-27 22:56:51,808 | INFO     | traces error code: 0
[2025-07-27 18:57:04] 2025-07-27 22:56:51,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:57:04] 2025-07-27 22:57:04,160 | INFO     | PID=4102161 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:57:04] 2025-07-27 22:57:04,161 | INFO     | .. there are 15 such processes running
[2025-07-27 18:57:04] 2025-07-27 22:57:04,161 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:57:04] 2025-07-27 22:57:04,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:57:04] 2025-07-27 22:57:04,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:57:04] 2025-07-27 22:57:04,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:57:04] 2025-07-27 22:57:04,162 | INFO     | [monitor] control thread has ended
[2025-07-27 18:57:04] 2025-07-27 22:57:04,346 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:57:04] 2025-07-27 22:57:04,349 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:57:04] 2025-07-27 22:57:04,353 [wrapper] pilotpid: 4102161
[2025-07-27 18:57:04] 2025-07-27 22:57:04,357 [wrapper] Pilot exit status: 0
[2025-07-27 18:57:04] 2025-07-27 22:57:04,369 [wrapper] pandaids: 6747525121
[2025-07-27 18:57:04] 2025-07-27 22:57:04,479 [wrapper] cleanup supervisor_pilot  100758 4102162
[2025-07-27 18:57:04] 2025-07-27 22:57:04,489 [wrapper] Test setup, not cleaning
[2025-07-27 18:57:04] 2025-07-27 22:57:04,494 [wrapper] apfmon messages muted
[2025-07-27 18:57:04] 2025-07-27 22:57:04,498 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:57:04] 2025-07-27 22:57:04,501 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:57:04]  *** Error codes and diagnostics ***
[2025-07-27 18:57:04]     "exeErrorCode": 0,
[2025-07-27 18:57:04]     "exeErrorDiag": "",
[2025-07-27 18:57:04]     "pilotErrorCode": 0,
[2025-07-27 18:57:04]     "pilotErrorDiag": "",
[2025-07-27 18:57:04]  *** Listing of results directory ***
[2025-07-27 18:57:04] total 439336
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 12:02 pilot3.tar.gz
[2025-07-27 18:57:04] -rwx------. 1 boincer umatlas     36292 Jul 27 12:04 runpilot2-wrapper.sh
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 12:04 queuedata.json
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:57:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:21 run_atlas
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:21 job.xml
[2025-07-27 18:57:04] -rw-r--r--. 2 boincer umatlas 228883159 Jul 27 17:21 EVNT.45743347._002839.pool.root.1
[2025-07-27 18:57:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:21 start_atlas.sh
[2025-07-27 18:57:04] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:21 shared
[2025-07-27 18:57:04] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 17:21 input.tar.gz
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:21 boinc_lockfile
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 17:21 pandaJob.out
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas    980117 Jul 27 17:21 agis_schedconf.cvmfs.json
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:21 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:57:04] drwx------. 4 boincer umatlas      4096 Jul 27 17:21 pilot3
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas      6944 Jul 27 18:49 init_data.xml
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas 215416317 Jul 27 18:55 HITS.45743349._052034.pool.root.1
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas       529 Jul 27 18:55 boinc_task_state.xml
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas      1038 Jul 27 18:56 memory_monitor_summary.json
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas    305811 Jul 27 18:56 log.45743349._052034.job.log.tgz.1
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas      7782 Jul 27 18:56 heartbeat.json
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:57 boinc_mmap_file
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas        27 Jul 27 18:57 wrapper_checkpoint.txt
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas        95 Jul 27 18:57 pilot_heartbeat.json
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas       823 Jul 27 18:57 pilotlog.txt
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas    547995 Jul 27 18:57 log.45743349._052034.job.log.1
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas       357 Jul 27 18:57 output.list
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:57 runtime_log
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas    870400 Jul 27 18:57 result.tar.gz
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 18:57 runtime_log.err
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas       653 Jul 27 18:57 fmxKDmf2I07n9Rq4apOajLDm4fhM0noT9bVof3QYDmIm2KDmz6AaYn.diag
[2025-07-27 18:57:04] -rw-r--r--. 1 boincer umatlas     22335 Jul 27 18:57 stderr.txt
[2025-07-27 18:57:04] HITS file was successfully produced:
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas 215416317 Jul 27 18:55 shared/HITS.pool.root.1
[2025-07-27 18:57:04]  *** Contents of shared directory: ***
[2025-07-27 18:57:04] total 435296
[2025-07-27 18:57:04] -rw-r--r--. 2 boincer umatlas 228883159 Jul 27 17:21 ATLAS.root_0
[2025-07-27 18:57:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:21 start_atlas.sh
[2025-07-27 18:57:04] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 17:21 input.tar.gz
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas 215416317 Jul 27 18:55 HITS.pool.root.1
[2025-07-27 18:57:04] -rw-------. 1 boincer umatlas    870400 Jul 27 18:57 result.tar.gz
18:57:06 (4098367): run_atlas exited; CPU time 41802.958832
18:57:06 (4098367): called boinc_finish(0)

</stderr_txt>
]]>

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