Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:32:01 (3302928): wrapper (7.7.26015): starting
17:32:01 (3302928): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 17:32:01] Arguments: --nthreads 8
[2025-07-27 17:32:01] Threads: 8
[2025-07-27 17:32:01] Checking for CVMFS
[2025-07-27 17:32:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:32:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:32:02] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:32:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:32:02] 2.13.0.0 99742 27775 359644 148825 3 365 18674154 32935936 19984 16776704 1 252892165 99.627 279354124 20313 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 17:32:02] CVMFS is ok
[2025-07-27 17:32:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:32:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:32:02] Further information can be found at the LHC@home message board.
[2025-07-27 17:32:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:32:02] Checking for apptainer binary...
[2025-07-27 17:32:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:32:02] Running /usr/bin/apptainer --version
[2025-07-27 17:32:02] apptainer version 1.4.1-1.el9
[2025-07-27 17:32:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:32:02] c7-6-31.aglt2.org
[2025-07-27 17:32:02] apptainer works
[2025-07-27 17:32:02] Set ATHENA_PROC_NUMBER=8
[2025-07-27 17:32:02] Set ATHENA_CORE_NUMBER=8
[2025-07-27 17:32:02] Starting ATLAS job with PandaID=6747412095
[2025-07-27 17:32:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:50:45]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:50:45]  scope=mc23_13p6TeV
[2025-07-27 18:50:45]  status=None
[2025-07-27 18:50:45]  status_code=0
[2025-07-27 18:50:45]  storage_token=
[2025-07-27 18:50:45]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747412095/log.45743349._049197.job.log.tgz.1
[2025-07-27 18:50:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/62/log.45743349._049197.job.log.tgz.1
[2025-07-27 18:50:45]  workdir=None
[2025-07-27 18:50:45] ]
[2025-07-27 18:50:45] 2025-07-27 22:50:02,878 | INFO     | transferring file log.45743349._049197.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747412095/log.45743349._049197.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 18:50:45] 2025-07-27 22:50:02,878 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747412095/log.45743349._049197.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._049197.job
[2025-07-27 18:50:45] 2025-07-27 22:50:02,901 | INFO     | adding to output.list: log.45743349._049197.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/62/log.45743349._049197.job.log.tg
[2025-07-27 18:50:45] 2025-07-27 22:50:02,902 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:50:45] 2025-07-27 22:50:02,902 | INFO     | summary of transferred files:
[2025-07-27 18:50:45] 2025-07-27 22:50:02,902 | INFO     |  -- lfn=log.45743349._049197.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:50:45] 2025-07-27 22:50:02,902 | INFO     | stage-out finished correctly
[2025-07-27 18:50:45] 2025-07-27 22:50:03,397 | INFO     | monitor loop #334: job 0:6747412095 is in state 'finished'
[2025-07-27 18:50:45] 2025-07-27 22:50:03,397 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:50:45] 2025-07-27 22:50:04,030 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:50:45] 2025-07-27 22:50:05,258 | INFO     | job 6747412095 has state=finished
[2025-07-27 18:50:45] 2025-07-27 22:50:05,258 | INFO     | preparing for final server update for job 6747412095 in state='finished'
[2025-07-27 18:50:45] 2025-07-27 22:50:05,258 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:50:45] 2025-07-27 22:50:05,258 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:50:45] 2025-07-27 22:50:05,259 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:50:45] 2025-07-27 22:50:05,259 | INFO     | job 6747412095 has finished - writing final server update
[2025-07-27 18:50:45] 2025-07-27 22:50:05,259 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:50:45] 2025-07-27 22:50:05,260 | INFO     | executing command: lscpu
[2025-07-27 18:50:45] 2025-07-27 22:50:05,319 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:50:45] 2025-07-27 22:50:05,900 | INFO     | monitor loop #335: job 0:6747412095 is in state 'finished'
[2025-07-27 18:50:45] 2025-07-27 22:50:05,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:50:45] 2025-07-27 22:50:08,403 | INFO     | monitor loop #336: job 0:6747412095 is in state 'finished'
[2025-07-27 18:50:45] 2025-07-27 22:50:08,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:50:45] 2025-07-27 22:50:10,908 | INFO     | monitor loop #337: job 0:6747412095 is in state 'finished'
[2025-07-27 18:50:45] 2025-07-27 22:50:10,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:50:45] 2025-07-27 22:50:11,610 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:50:45] 2025-07-27 22:50:11,625 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3183.899770833335
[2025-07-27 18:50:45] 2025-07-27 22:50:11,639 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747412095/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:50:45] 2025-07-27 22:50:11,640 | INFO     | extracted standard info from prmon json
[2025-07-27 18:50:45] 2025-07-27 22:50:11,640 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:50:45] 2025-07-27 22:50:11,641 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:50:45] 2025-07-27 22:50:11,641 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:50:45] 2025-07-27 22:50:11,641 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:50:45] 2025-07-27 22:50:11,643 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:50:45] 2025-07-27 22:50:11,643 | INFO     | sum of square deviations: 101843770.0
[2025-07-27 18:50:45] 2025-07-27 22:50:11,643 | INFO     | sum of deviations: -10502481935.000002
[2025-07-27 18:50:45] 2025-07-27 22:50:11,643 | INFO     | mean x: 1753654345.0
[2025-07-27 18:50:45] 2025-07-27 22:50:11,643 | INFO     | mean y: 2322423.855072464
[2025-07-27 18:50:45] 2025-07-27 22:50:11,643 | INFO     | -- intersect: 180845226006.4381
[2025-07-27 18:50:45] 2025-07-27 22:50:11,644 | INFO     | intersect: 180845226006.4381
[2025-07-27 18:50:45] 2025-07-27 22:50:11,644 | INFO     | chi2: 0.08882662655288531
[2025-07-27 18:50:45] 2025-07-27 22:50:11,644 | INFO     | -- intersect: 180845226006.4381
[2025-07-27 18:50:45] 2025-07-27 22:50:11,644 | INFO     | current memory leak: -103.12 B/s (using 69 data points, chi2=0.09)
[2025-07-27 18:50:45] 2025-07-27 22:50:11,644 | INFO     | could have reported an average CPU frequency of 3206 MHz (6 samples)
[2025-07-27 18:50:45] 2025-07-27 22:50:11,644 | INFO     | ..............................
[2025-07-27 18:50:45] 2025-07-27 22:50:11,645 | INFO     | . Timing measurements:
[2025-07-27 18:50:45] 2025-07-27 22:50:11,645 | INFO     | . get job = 0 s
[2025-07-27 18:50:45] 2025-07-27 22:50:11,645 | INFO     | . initial setup = 2 s
[2025-07-27 18:50:45] 2025-07-27 22:50:11,645 | INFO     | . payload setup = 8 s
[2025-07-27 18:50:45] 2025-07-27 22:50:11,645 | INFO     | . stage-in = 0 s
[2025-07-27 18:50:45] 2025-07-27 22:50:11,645 | INFO     | . payload execution = 4640 s
[2025-07-27 18:50:45] 2025-07-27 22:50:11,645 | INFO     | . stage-out = 0 s
[2025-07-27 18:50:45] 2025-07-27 22:50:11,645 | INFO     | . log creation = 0 s
[2025-07-27 18:50:45] 2025-07-27 22:50:11,645 | INFO     | ..............................
[2025-07-27 18:50:45] 2025-07-27 22:50:11,725 | INFO     | 
[2025-07-27 18:50:45] 2025-07-27 22:50:11,725 | INFO     | job summary report
[2025-07-27 18:50:45] 2025-07-27 22:50:11,725 | INFO     | --------------------------------------------------
[2025-07-27 18:50:45] 2025-07-27 22:50:11,725 | INFO     | PanDA job id: 6747412095
[2025-07-27 18:50:45] 2025-07-27 22:50:11,725 | INFO     | task id: 45743349
[2025-07-27 18:50:45] 2025-07-27 22:50:11,725 | INFO     | errors: (none)
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | pilot state: finished 
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | transexitcode: 0
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | exeerrorcode: 0
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | exeerrordiag: 
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | exitcode: 0
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | exitmsg: OK
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | cpuconsumptiontime: 33253 s
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | nevents: 400
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | neventsw: 0
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | pid: 3313574
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | pgrp: 3313574
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | corecount: 8
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | event service: False
[2025-07-27 18:50:45] 2025-07-27 22:50:11,726 | INFO     | sizes: {0: 2397473, 6: 2397735, 11: 2397763, 4649: 2423874, 4651: 2432872, 4652: 2432928, 4660: 2433250}
[2025-07-27 18:50:45] 2025-07-27 22:50:11,727 | INFO     | --------------------------------------------------
[2025-07-27 18:50:45] 2025-07-27 22:50:11,727 | INFO     | 
[2025-07-27 18:50:45] 2025-07-27 22:50:11,727 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 18:50:45] 2025-07-27 22:50:11,750 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,750 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,750 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,750 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,750 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,750 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:50:45] 2025-07-27 22:50:11,751 | INFO     | job 6747412095 has completed (purged errors)
[2025-07-27 18:50:45] 2025-07-27 22:50:11,752 | INFO     | overall cleanup function is called
[2025-07-27 18:50:45] 2025-07-27 22:50:12,395 | INFO     | PID=3306738 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 18:50:45] 2025-07-27 22:50:12,396 | INFO     | .. there are 25 such processes running
[2025-07-27 18:50:45] 2025-07-27 22:50:12,759 | INFO     | --- collectZombieJob: --- 10, [3313574]
[2025-07-27 18:50:45] 2025-07-27 22:50:12,759 | INFO     | zombie collector waiting for pid 3313574
[2025-07-27 18:50:45] 2025-07-27 22:50:12,759 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:50:45] 2025-07-27 22:50:12,759 | INFO     | collected zombie processes
[2025-07-27 18:50:45] 2025-07-27 22:50:12,759 | INFO     | will attempt to kill all subprocesses of pid=3313574
[2025-07-27 18:50:45] 2025-07-27 22:50:13,168 | INFO     | process IDs to be killed: [3313574] (in reverse order)
[2025-07-27 18:50:45] 2025-07-27 22:50:13,353 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:50:45] 2025-07-27 22:50:13,353 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:50:45] 2025-07-27 22:50:13,373 | INFO     | did not find any defunct processes belonging to 3313574
[2025-07-27 18:50:45] 2025-07-27 22:50:13,393 | INFO     | did not find any defunct processes belonging to 3313574
[2025-07-27 18:50:45] 2025-07-27 22:50:13,395 | INFO     | ready for new job
[2025-07-27 18:50:45] 2025-07-27 22:50:13,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:50:45] 2025-07-27 22:50:13,397 | INFO     | ***************************************
[2025-07-27 18:50:45] 2025-07-27 22:50:13,398 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:50:45] 2025-07-27 22:50:13,398 | INFO     | ***************************************
[2025-07-27 18:50:45] 2025-07-27 22:50:13,398 | INFO     | 
[2025-07-27 18:50:45] 2025-07-27 22:50:13,418 | INFO     | architecture information:
[2025-07-27 18:50:45] 2025-07-27 22:50:13,419 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:50:45] 2025-07-27 22:50:13,445 | INFO     | cat /etc/os-release:
[2025-07-27 18:50:45] NAME="CentOS Linux"
[2025-07-27 18:50:45] VERSION="7 (Core)"
[2025-07-27 18:50:45] ID="centos"
[2025-07-27 18:50:45] ID_LIKE="rhel fedora"
[2025-07-27 18:50:45] VERSION_ID="7"
[2025-07-27 18:50:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:50:45] ANSI_COLOR="0;31"
[2025-07-27 18:50:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:50:45] HOME_URL="https://www.centos.org/"
[2025-07-27 18:50:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:50:45] 
[2025-07-27 18:50:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:50:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:50:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:50:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:50:45] 
[2025-07-27 18:50:45] 2025-07-27 22:50:13,446 | INFO     | ***************************************
[2025-07-27 18:50:45] 2025-07-27 22:50:13,949 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 18:50:45] 2025-07-27 22:50:13,969 | INFO     | sufficient remaining disk space (75428265984 B)
[2025-07-27 18:50:45] 2025-07-27 22:50:13,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:50:45] 2025-07-27 22:50:13,970 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:50:45] 2025-07-27 22:50:13,970 | INFO     | update_server=False
[2025-07-27 18:50:45] 2025-07-27 22:50:13,970 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:50:45] 2025-07-27 22:50:13,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:50:45] 2025-07-27 22:50:14,349 | INFO     | all data control threads have been joined
[2025-07-27 18:50:45] 2025-07-27 22:50:14,417 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:50:45] 2025-07-27 22:50:14,417 | INFO     | aborting loop
[2025-07-27 18:50:45] 2025-07-27 22:50:14,476 | INFO     | all job control threads have been joined
[2025-07-27 18:50:45] 2025-07-27 22:50:14,609 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:50:45] 2025-07-27 22:50:14,977 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:15,355 | INFO     | [data] control thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:15,423 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:15,453 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:15,462 | INFO     | all payload control threads have been joined
[2025-07-27 18:50:45] 2025-07-27 22:50:15,482 | INFO     | [job] control thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:15,561 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:15,569 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:15,749 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:15,751 | INFO     | [job] validate thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:15,800 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:15,977 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:16,467 | INFO     | [payload] control thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:16,537 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:16,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:50:45] 2025-07-27 22:50:17,742 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:18,616 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:24,666 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:50:45] 2025-07-27 22:50:25,674 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:50:45] 2025-07-27 22:50:26,035 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140189378422592)>', '<ExcThread(monitor, started 140188663670528)>']
[2025-07-27 18:50:45] 2025-07-27 22:50:31,060 | INFO     | all workflow threads have been joined
[2025-07-27 18:50:45] 2025-07-27 22:50:31,060 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:50:45] 2025-07-27 22:50:31,061 | INFO     | traces error code: 0
[2025-07-27 18:50:45] 2025-07-27 22:50:31,061 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:50:45] 2025-07-27 22:50:45,075 | INFO     | PID=3306738 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:50:45] 2025-07-27 22:50:45,076 | INFO     | .. there are 25 such processes running
[2025-07-27 18:50:45] 2025-07-27 22:50:45,077 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:50:45] 2025-07-27 22:50:45,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:50:45] 2025-07-27 22:50:45,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:50:45] 2025-07-27 22:50:45,077 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:50:45] 2025-07-27 22:50:45,077 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 18:50:45] 2025-07-27 22:50:45,077 | INFO     | [monitor] control thread has ended
[2025-07-27 18:50:45] 2025-07-27 22:50:45,241 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:50:45] 2025-07-27 22:50:45,246 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:50:45] 2025-07-27 22:50:45,253 [wrapper] pilotpid: 3306738
[2025-07-27 18:50:45] 2025-07-27 22:50:45,258 [wrapper] Pilot exit status: 0
[2025-07-27 18:50:45] 2025-07-27 22:50:45,286 [wrapper] pandaids: 6747412095
[2025-07-27 18:50:45] 2025-07-27 22:50:45,412 [wrapper] cleanup supervisor_pilot 4049632 3306739
[2025-07-27 18:50:45] 2025-07-27 22:50:45,415 [wrapper] Test setup, not cleaning
[2025-07-27 18:50:45] 2025-07-27 22:50:45,418 [wrapper] apfmon messages muted
[2025-07-27 18:50:45] 2025-07-27 22:50:45,420 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:50:45] 2025-07-27 22:50:45,423 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:50:45]  *** Error codes and diagnostics ***
[2025-07-27 18:50:45]     "exeErrorCode": 0,
[2025-07-27 18:50:45]     "exeErrorDiag": "",
[2025-07-27 18:50:45]     "pilotErrorCode": 0,
[2025-07-27 18:50:45]     "pilotErrorDiag": "",
[2025-07-27 18:50:45]  *** Listing of results directory ***
[2025-07-27 18:50:45] total 432772
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 09:04 pilot3.tar.gz
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 09:32 queuedata.json
[2025-07-27 18:50:45] -rwx------. 1 boincer umatlas     36292 Jul 27 09:33 runpilot2-wrapper.sh
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:50:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:32 run_atlas
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:32 job.xml
[2025-07-27 18:50:45] -rw-r--r--. 2 boincer umatlas 230445064 Jul 27 17:32 EVNT.45743347._002719.pool.root.1
[2025-07-27 18:50:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:32 start_atlas.sh
[2025-07-27 18:50:45] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:32 shared
[2025-07-27 18:50:45] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 17:32 input.tar.gz
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:32 boinc_lockfile
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 17:32 pandaJob.out
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas    980117 Jul 27 17:32 agis_schedconf.cvmfs.json
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:32 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:50:45] drwx------. 4 boincer umatlas      4096 Jul 27 17:32 pilot3
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas 207332512 Jul 27 18:49 HITS.45743349._049197.pool.root.1
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas       529 Jul 27 18:49 boinc_task_state.xml
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas      6932 Jul 27 18:50 init_data.xml
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas      1031 Jul 27 18:50 memory_monitor_summary.json
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas    294165 Jul 27 18:50 log.45743349._049197.job.log.tgz.1
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas      7773 Jul 27 18:50 heartbeat.json
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:50 boinc_mmap_file
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas        27 Jul 27 18:50 wrapper_checkpoint.txt
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas       893 Jul 27 18:50 pilotlog.txt
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas        95 Jul 27 18:50 pilot_heartbeat.json
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas    457484 Jul 27 18:50 log.45743349._049197.job.log.1
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas       357 Jul 27 18:50 output.list
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:50 runtime_log
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas    768000 Jul 27 18:50 result.tar.gz
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 18:50 runtime_log.err
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas       651 Jul 27 18:50 by8LDmPgG07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHPVLDmrVa9zm.diag
[2025-07-27 18:50:45] -rw-r--r--. 1 boincer umatlas     22008 Jul 27 18:50 stderr.txt
[2025-07-27 18:50:45] HITS file was successfully produced:
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas 207332512 Jul 27 18:49 shared/HITS.pool.root.1
[2025-07-27 18:50:45]  *** Contents of shared directory: ***
[2025-07-27 18:50:45] total 428832
[2025-07-27 18:50:45] -rw-r--r--. 2 boincer umatlas 230445064 Jul 27 17:32 ATLAS.root_0
[2025-07-27 18:50:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:32 start_atlas.sh
[2025-07-27 18:50:45] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 17:32 input.tar.gz
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas 207332512 Jul 27 18:49 HITS.pool.root.1
[2025-07-27 18:50:45] -rw-------. 1 boincer umatlas    768000 Jul 27 18:50 result.tar.gz
18:50:47 (3302928): run_atlas exited; CPU time 33427.194711
18:50:47 (3302928): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN