Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:28:33 (1608852): wrapper (7.7.26015): starting
18:28:33 (1608852): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 18:28:33] Arguments: --nthreads 12
[2025-07-27 18:28:33] Threads: 12
[2025-07-27 18:28:33] Checking for CVMFS
[2025-07-27 18:28:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:28:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:28:33] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:28:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:28:34] 2.13.0.0 1395644 18964 293400 148827 3 307 30137154 32935936 7842 16776704 1 43338866 99.628 80089194 25483 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 18:28:34] CVMFS is ok
[2025-07-27 18:28:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:28:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:28:34] Further information can be found at the LHC@home message board.
[2025-07-27 18:28:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:28:34] Checking for apptainer binary...
[2025-07-27 18:28:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:28:34] Running /usr/bin/apptainer --version
[2025-07-27 18:28:34] apptainer version 1.4.1-1.el9
[2025-07-27 18:28:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:28:34] c6-6-39-2.aglt2.org
[2025-07-27 18:28:34] apptainer works
[2025-07-27 18:28:34] Set ATHENA_PROC_NUMBER=12
[2025-07-27 18:28:34] Set ATHENA_CORE_NUMBER=12
[2025-07-27 18:28:34] Starting ATLAS job with PandaID=6746473119
[2025-07-27 18:28:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:57:44]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:57:44]  protocol_id=None
[2025-07-27 19:57:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 19:57:44]  replicas=None
[2025-07-27 19:57:44]  scope=mc23_13p6TeV
[2025-07-27 19:57:44]  status=None
[2025-07-27 19:57:44]  status_code=0
[2025-07-27 19:57:44]  storage_token=
[2025-07-27 19:57:44]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746473119/log.45759781._000048.job.log.tgz.1
[2025-07-27 19:57:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/84/log.45759781._000048.job.log.tgz.1
[2025-07-27 19:57:44]  workdir=None
[2025-07-27 19:57:44] ]
[2025-07-27 19:57:44] 2025-07-27 23:57:05,644 | INFO     | transferring file log.45759781._000048.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746473119/log.45759781._000048.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:57:44] 2025-07-27 23:57:05,644 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746473119/log.45759781._000048.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759781._000048.job
[2025-07-27 19:57:44] 2025-07-27 23:57:05,665 | INFO     | adding to output.list: log.45759781._000048.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/84/log.45759781._000048.job.log.tg
[2025-07-27 19:57:44] 2025-07-27 23:57:05,666 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:57:44] 2025-07-27 23:57:05,667 | INFO     | summary of transferred files:
[2025-07-27 19:57:44] 2025-07-27 23:57:05,667 | INFO     |  -- lfn=log.45759781._000048.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:57:44] 2025-07-27 23:57:05,667 | INFO     | stage-out finished correctly
[2025-07-27 19:57:44] 2025-07-27 23:57:06,068 | INFO     | PID=1612620 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 19:57:44] 2025-07-27 23:57:06,068 | INFO     | .. there are 9 such processes running
[2025-07-27 19:57:44] 2025-07-27 23:57:06,338 | INFO     | monitor loop #385: job 0:6746473119 is in state 'finished'
[2025-07-27 19:57:44] 2025-07-27 23:57:06,338 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:57:44] 2025-07-27 23:57:06,403 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:57:44] 2025-07-27 23:57:06,952 | INFO     | job 6746473119 has state=finished
[2025-07-27 19:57:44] 2025-07-27 23:57:06,952 | INFO     | preparing for final server update for job 6746473119 in state='finished'
[2025-07-27 19:57:44] 2025-07-27 23:57:06,952 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:57:44] 2025-07-27 23:57:06,953 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:57:44] 2025-07-27 23:57:06,953 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:57:44] 2025-07-27 23:57:06,953 | INFO     | job 6746473119 has finished - writing final server update
[2025-07-27 19:57:44] 2025-07-27 23:57:06,953 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:57:44] 2025-07-27 23:57:06,954 | INFO     | executing command: lscpu
[2025-07-27 19:57:44] 2025-07-27 23:57:07,011 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:57:44] 2025-07-27 23:57:08,841 | INFO     | monitor loop #386: job 0:6746473119 is in state 'finished'
[2025-07-27 19:57:44] 2025-07-27 23:57:08,842 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:57:44] 2025-07-27 23:57:11,344 | INFO     | monitor loop #387: job 0:6746473119 is in state 'finished'
[2025-07-27 19:57:44] 2025-07-27 23:57:11,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:57:44] 2025-07-27 23:57:11,558 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 19:57:44] 2025-07-27 23:57:11,561 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2678.536678571429
[2025-07-27 19:57:44] 2025-07-27 23:57:11,568 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746473119/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:57:44] 2025-07-27 23:57:11,569 | INFO     | extracted standard info from prmon json
[2025-07-27 19:57:44] 2025-07-27 23:57:11,569 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:57:44] 2025-07-27 23:57:11,569 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:57:44] 2025-07-27 23:57:11,570 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:57:44] 2025-07-27 23:57:11,570 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:57:44] 2025-07-27 23:57:11,571 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:57:44] 2025-07-27 23:57:11,571 | INFO     | sum of square deviations: 158737860.0
[2025-07-27 19:57:44] 2025-07-27 23:57:11,571 | INFO     | sum of deviations: -19836095320.5
[2025-07-27 19:57:44] 2025-07-27 23:57:11,571 | INFO     | mean x: 1753658072.5
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | mean y: 2592746.6625
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | -- intersect: 219142051258.16254
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | intersect: 219142051258.16254
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | chi2: 0.14378981725286458
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | -- intersect: 219142051258.16254
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | current memory leak: -124.96 B/s (using 80 data points, chi2=0.14)
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | could have reported an average CPU frequency of 2734 MHz (6 samples)
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | ..............................
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | . Timing measurements:
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | . get job = 0 s
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | . initial setup = 2 s
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | . payload setup = 8 s
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | . stage-in = 0 s
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | . payload execution = 5267 s
[2025-07-27 19:57:44] 2025-07-27 23:57:11,572 | INFO     | . stage-out = 0 s
[2025-07-27 19:57:44] 2025-07-27 23:57:11,573 | INFO     | . log creation = 0 s
[2025-07-27 19:57:44] 2025-07-27 23:57:11,573 | INFO     | ..............................
[2025-07-27 19:57:44] 2025-07-27 23:57:12,028 | INFO     | 
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | job summary report
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | --------------------------------------------------
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | PanDA job id: 6746473119
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | task id: 45759781
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | errors: (none)
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | pilot state: finished 
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | transexitcode: 0
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | exeerrorcode: 0
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | exeerrordiag: 
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | exitcode: 0
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | exitmsg: OK
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | cpuconsumptiontime: 54871 s
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | nevents: 400
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | neventsw: 0
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | pid: 1619574
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | pgrp: 1619574
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | corecount: 12
[2025-07-27 19:57:44] 2025-07-27 23:57:12,029 | INFO     | event service: False
[2025-07-27 19:57:44] 2025-07-27 23:57:12,030 | INFO     | sizes: {0: 2396590, 1: 2397446, 6: 2397708, 12: 2397736, 5279: 2424156, 5282: 2433154, 5283: 2433338, 5288: 2433532}
[2025-07-27 19:57:44] 2025-07-27 23:57:12,030 | INFO     | --------------------------------------------------
[2025-07-27 19:57:44] 2025-07-27 23:57:12,030 | INFO     | 
[2025-07-27 19:57:44] 2025-07-27 23:57:12,030 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 19:57:44] 2025-07-27 23:57:12,047 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,047 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,047 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,047 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,047 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:57:44] 2025-07-27 23:57:12,048 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,049 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:57:44] 2025-07-27 23:57:12,049 | INFO     | job 6746473119 has completed (purged errors)
[2025-07-27 19:57:44] 2025-07-27 23:57:12,049 | INFO     | overall cleanup function is called
[2025-07-27 19:57:44] 2025-07-27 23:57:13,057 | INFO     | --- collectZombieJob: --- 10, [1619574]
[2025-07-27 19:57:44] 2025-07-27 23:57:13,057 | INFO     | zombie collector waiting for pid 1619574
[2025-07-27 19:57:44] 2025-07-27 23:57:13,058 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:57:44] 2025-07-27 23:57:13,058 | INFO     | collected zombie processes
[2025-07-27 19:57:44] 2025-07-27 23:57:13,058 | INFO     | will attempt to kill all subprocesses of pid=1619574
[2025-07-27 19:57:44] 2025-07-27 23:57:13,304 | INFO     | process IDs to be killed: [1619574] (in reverse order)
[2025-07-27 19:57:44] 2025-07-27 23:57:13,383 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:57:44] 2025-07-27 23:57:13,383 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:57:44] 2025-07-27 23:57:13,394 | INFO     | did not find any defunct processes belonging to 1619574
[2025-07-27 19:57:44] 2025-07-27 23:57:13,404 | INFO     | did not find any defunct processes belonging to 1619574
[2025-07-27 19:57:44] 2025-07-27 23:57:13,404 | INFO     | ready for new job
[2025-07-27 19:57:44] 2025-07-27 23:57:13,404 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:57:44] 2025-07-27 23:57:13,406 | INFO     | ***************************************
[2025-07-27 19:57:44] 2025-07-27 23:57:13,407 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:57:44] 2025-07-27 23:57:13,407 | INFO     | ***************************************
[2025-07-27 19:57:44] 2025-07-27 23:57:13,407 | INFO     | 
[2025-07-27 19:57:44] 2025-07-27 23:57:13,422 | INFO     | architecture information:
[2025-07-27 19:57:44] 2025-07-27 23:57:13,422 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:57:44] 2025-07-27 23:57:13,438 | INFO     | cat /etc/os-release:
[2025-07-27 19:57:44] NAME="CentOS Linux"
[2025-07-27 19:57:44] VERSION="7 (Core)"
[2025-07-27 19:57:44] ID="centos"
[2025-07-27 19:57:44] ID_LIKE="rhel fedora"
[2025-07-27 19:57:44] VERSION_ID="7"
[2025-07-27 19:57:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:57:44] ANSI_COLOR="0;31"
[2025-07-27 19:57:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:57:44] HOME_URL="https://www.centos.org/"
[2025-07-27 19:57:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:57:44] 
[2025-07-27 19:57:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:57:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:57:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:57:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:57:44] 
[2025-07-27 19:57:44] 2025-07-27 23:57:13,438 | INFO     | ***************************************
[2025-07-27 19:57:44] 2025-07-27 23:57:13,941 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 19:57:44] 2025-07-27 23:57:13,959 | INFO     | sufficient remaining disk space (73920413696 B)
[2025-07-27 19:57:44] 2025-07-27 23:57:13,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:57:44] 2025-07-27 23:57:13,960 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:57:44] 2025-07-27 23:57:13,960 | INFO     | update_server=False
[2025-07-27 19:57:44] 2025-07-27 23:57:13,960 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:57:44] 2025-07-27 23:57:13,961 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:57:44] 2025-07-27 23:57:14,171 | INFO     | all data control threads have been joined
[2025-07-27 19:57:44] 2025-07-27 23:57:14,733 | INFO     | all payload control threads have been joined
[2025-07-27 19:57:44] 2025-07-27 23:57:14,852 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:57:44] 2025-07-27 23:57:14,853 | INFO     | aborting loop
[2025-07-27 19:57:44] 2025-07-27 23:57:14,868 | INFO     | all job control threads have been joined
[2025-07-27 19:57:44] 2025-07-27 23:57:14,965 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:15,035 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:15,036 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:15,176 | INFO     | [data] control thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:15,304 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:15,638 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:15,663 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:15,738 | INFO     | [payload] control thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:15,857 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:15,873 | INFO     | [job] control thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:15,965 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:16,106 | INFO     | [job] validate thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:16,317 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:16,659 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:57:44] 2025-07-27 23:57:16,995 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:57:44] 2025-07-27 23:57:17,664 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:21,001 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:24,733 | INFO     | job.realtimelogging is not enabled
[2025-07-27 19:57:44] 2025-07-27 23:57:25,740 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:57:44] 2025-07-27 23:57:26,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672964278080)>', '<ExcThread(monitor, started 139672193853184)>']
[2025-07-27 19:57:44] 2025-07-27 23:57:31,289 | INFO     | all workflow threads have been joined
[2025-07-27 19:57:44] 2025-07-27 23:57:31,289 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:57:44] 2025-07-27 23:57:31,290 | INFO     | traces error code: 0
[2025-07-27 19:57:44] 2025-07-27 23:57:31,290 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:57:44] 2025-07-27 23:57:44,468 | INFO     | PID=1612620 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:57:44] 2025-07-27 23:57:44,468 | INFO     | .. there are 9 such processes running
[2025-07-27 19:57:44] 2025-07-27 23:57:44,469 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:57:44] 2025-07-27 23:57:44,469 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:57:44] 2025-07-27 23:57:44,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:57:44] 2025-07-27 23:57:44,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:57:44] 2025-07-27 23:57:44,469 | INFO     | [monitor] control thread has ended
[2025-07-27 19:57:44] 2025-07-27 23:57:44,708 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:57:44] 2025-07-27 23:57:44,712 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:57:44] 2025-07-27 23:57:44,716 [wrapper] pilotpid: 1612620
[2025-07-27 19:57:44] 2025-07-27 23:57:44,719 [wrapper] Pilot exit status: 0
[2025-07-27 19:57:44] 2025-07-27 23:57:44,731 [wrapper] pandaids: 6746473119
[2025-07-27 19:57:44] 2025-07-27 23:57:44,788 [wrapper] cleanup supervisor_pilot 1838858 1612621
[2025-07-27 19:57:44] 2025-07-27 23:57:44,792 [wrapper] Test setup, not cleaning
[2025-07-27 19:57:44] 2025-07-27 23:57:44,796 [wrapper] apfmon messages muted
[2025-07-27 19:57:44] 2025-07-27 23:57:44,800 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:57:44] 2025-07-27 23:57:44,803 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:57:44]  *** Error codes and diagnostics ***
[2025-07-27 19:57:44]     "exeErrorCode": 0,
[2025-07-27 19:57:44]     "exeErrorDiag": "",
[2025-07-27 19:57:44]     "pilotErrorCode": 0,
[2025-07-27 19:57:44]     "pilotErrorDiag": "",
[2025-07-27 19:57:44]  *** Listing of results directory ***
[2025-07-27 19:57:44] total 402480
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 03:44 pilot3.tar.gz
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 03:49 queuedata.json
[2025-07-27 19:57:44] -rwx------. 1 boincer umatlas     36292 Jul 27 03:51 runpilot2-wrapper.sh
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas       100 Jul 27 18:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:57:44] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 18:28 run_atlas
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas       105 Jul 27 18:28 job.xml
[2025-07-27 19:57:44] -rw-r--r--. 2 boincer umatlas 239404431 Jul 27 18:28 EVNT.45759779._000002.pool.root.1
[2025-07-27 19:57:44] -rw-r--r--. 2 boincer umatlas    542885 Jul 27 18:28 input.tar.gz
[2025-07-27 19:57:44] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:28 start_atlas.sh
[2025-07-27 19:57:44] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 18:28 shared
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas         0 Jul 27 18:28 boinc_lockfile
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas      2561 Jul 27 18:28 pandaJob.out
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas    980109 Jul 27 18:28 agis_schedconf.cvmfs.json
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:28 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:57:44] drwx------. 4 boincer umatlas      4096 Jul 27 18:28 pilot3
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas 167061306 Jul 27 19:56 HITS.45759781._000048.pool.root.1
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas      6840 Jul 27 19:56 init_data.xml
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:56 boinc_task_state.xml
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas      1052 Jul 27 19:57 memory_monitor_summary.json
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas    383845 Jul 27 19:57 log.45759781._000048.job.log.tgz.1
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas      7824 Jul 27 19:57 heartbeat.json
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:57 boinc_mmap_file
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:57 wrapper_checkpoint.txt
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas        95 Jul 27 19:57 pilot_heartbeat.json
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas       822 Jul 27 19:57 pilotlog.txt
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas    515023 Jul 27 19:57 log.45759781._000048.job.log.1
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas       357 Jul 27 19:57 output.list
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:57 runtime_log
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas    921600 Jul 27 19:57 result.tar.gz
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas       654 Jul 27 19:57 TdDNDm7KB07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzfULDmquroLn.diag
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 19:57 runtime_log.err
[2025-07-27 19:57:44] -rw-r--r--. 1 boincer umatlas     21889 Jul 27 19:57 stderr.txt
[2025-07-27 19:57:44] HITS file was successfully produced:
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas 167061306 Jul 27 19:56 shared/HITS.pool.root.1
[2025-07-27 19:57:44]  *** Contents of shared directory: ***
[2025-07-27 19:57:44] total 398396
[2025-07-27 19:57:44] -rw-r--r--. 2 boincer umatlas 239404431 Jul 27 18:28 ATLAS.root_0
[2025-07-27 19:57:44] -rw-r--r--. 2 boincer umatlas    542885 Jul 27 18:28 input.tar.gz
[2025-07-27 19:57:44] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:28 start_atlas.sh
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas 167061306 Jul 27 19:56 HITS.pool.root.1
[2025-07-27 19:57:44] -rw-------. 1 boincer umatlas    921600 Jul 27 19:57 result.tar.gz
19:57:46 (1608852): run_atlas exited; CPU time 54956.684982
19:57:46 (1608852): called boinc_finish(0)

</stderr_txt>
]]>

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