Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:46:39 (1089878): wrapper (7.7.26015): starting
18:46:39 (1089878): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 18:46:39] Arguments: --nthreads 12
[2025-07-27 18:46:39] Threads: 12
[2025-07-27 18:46:39] Checking for CVMFS
[2025-07-27 18:46:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:46:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:46:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:46:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:46:40] 2.13.0.0 1190652 18983 355528 148827 2 545 25657030 32935936 7806 16776704 0 34192655 99.717 59383583 29111 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 18:46:40] CVMFS is ok
[2025-07-27 18:46:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:46:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:46:40] Further information can be found at the LHC@home message board.
[2025-07-27 18:46:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:46:40] Checking for apptainer binary...
[2025-07-27 18:46:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:46:40] Running /usr/bin/apptainer --version
[2025-07-27 18:46:40] apptainer version 1.4.1-1.el9
[2025-07-27 18:46:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:46:40] c6-1-26-3.aglt2.org
[2025-07-27 18:46:40] apptainer works
[2025-07-27 18:46:40] Set ATHENA_PROC_NUMBER=12
[2025-07-27 18:46:40] Set ATHENA_CORE_NUMBER=12
[2025-07-27 18:46:40] Starting ATLAS job with PandaID=6745061208
[2025-07-27 18:46:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:05:04]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:05:04]  mtime=0
[2025-07-27 20:05:04]  protocol_id=None
[2025-07-27 20:05:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 20:05:04]  replicas=None
[2025-07-27 20:05:04]  scope=mc23_13p6TeV
[2025-07-27 20:05:04]  status=None
[2025-07-27 20:05:04]  status_code=0
[2025-07-27 20:05:04]  storage_token=
[2025-07-27 20:05:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745061208/log.45743349._026373.job.log.tgz.1
[2025-07-27 20:05:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/34/log.45743349._026373.job.log.tgz.1
[2025-07-27 20:05:04]  workdir=None
[2025-07-27 20:05:04] ]
[2025-07-27 20:05:04] 2025-07-28 00:04:24,592 | INFO     | transferring file log.45743349._026373.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745061208/log.45743349._026373.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 20:05:04] 2025-07-28 00:04:24,593 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745061208/log.45743349._026373.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._026373.job
[2025-07-27 20:05:04] 2025-07-28 00:04:24,615 | INFO     | adding to output.list: log.45743349._026373.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/34/log.45743349._026373.job.log.tg
[2025-07-27 20:05:04] 2025-07-28 00:04:24,616 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:05:04] 2025-07-28 00:04:24,616 | INFO     | summary of transferred files:
[2025-07-27 20:05:04] 2025-07-28 00:04:24,616 | INFO     |  -- lfn=log.45743349._026373.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:05:04] 2025-07-28 00:04:24,617 | INFO     | stage-out finished correctly
[2025-07-27 20:05:04] 2025-07-28 00:04:24,851 | INFO     | monitor loop #345: job 0:6745061208 is in state 'finished'
[2025-07-27 20:05:04] 2025-07-28 00:04:24,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:05:04] 2025-07-28 00:04:26,034 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:05:04] 2025-07-28 00:04:26,113 | INFO     | job 6745061208 has state=finished
[2025-07-27 20:05:04] 2025-07-28 00:04:26,114 | INFO     | preparing for final server update for job 6745061208 in state='finished'
[2025-07-27 20:05:04] 2025-07-28 00:04:26,114 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:05:04] 2025-07-28 00:04:26,114 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:05:04] 2025-07-28 00:04:26,115 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:05:04] 2025-07-28 00:04:26,115 | INFO     | job 6745061208 has finished - writing final server update
[2025-07-27 20:05:04] 2025-07-28 00:04:26,115 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:05:04] 2025-07-28 00:04:26,116 | INFO     | executing command: lscpu
[2025-07-27 20:05:04] 2025-07-28 00:04:26,170 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:05:04] 2025-07-28 00:04:27,354 | INFO     | monitor loop #346: job 0:6745061208 is in state 'finished'
[2025-07-27 20:05:04] 2025-07-28 00:04:27,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:05:04] 2025-07-28 00:04:29,858 | INFO     | monitor loop #347: job 0:6745061208 is in state 'finished'
[2025-07-27 20:05:04] 2025-07-28 00:04:29,858 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:05:04] 2025-07-28 00:04:31,006 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 20:05:04] 2025-07-28 00:04:31,010 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2658.0092500000005
[2025-07-27 20:05:04] 2025-07-28 00:04:31,032 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745061208/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:05:04] 2025-07-28 00:04:31,033 | INFO     | extracted standard info from prmon json
[2025-07-27 20:05:04] 2025-07-28 00:04:31,033 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:05:04] 2025-07-28 00:04:31,033 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:05:04] 2025-07-28 00:04:31,033 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:05:04] 2025-07-28 00:04:31,033 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:05:04] 2025-07-28 00:04:31,035 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:05:04] 2025-07-28 00:04:31,035 | INFO     | sum of square deviations: 101843770.0
[2025-07-27 20:05:04] 2025-07-28 00:04:31,036 | INFO     | sum of deviations: -10720526008.0
[2025-07-27 20:05:04] 2025-07-28 00:04:31,036 | INFO     | mean x: 1753658824.0
[2025-07-27 20:05:04] 2025-07-28 00:04:31,036 | INFO     | mean y: 2511274.797101449
[2025-07-27 20:05:04] 2025-07-28 00:04:31,036 | INFO     | -- intersect: 184600401080.43463
[2025-07-27 20:05:04] 2025-07-28 00:04:31,036 | INFO     | intersect: 184600401080.43463
[2025-07-27 20:05:04] 2025-07-28 00:04:31,036 | INFO     | chi2: 0.1542284246131048
[2025-07-27 20:05:04] 2025-07-28 00:04:31,036 | INFO     | -- intersect: 184600401080.43463
[2025-07-27 20:05:04] 2025-07-28 00:04:31,036 | INFO     | current memory leak: -105.26 B/s (using 69 data points, chi2=0.15)
[2025-07-27 20:05:04] 2025-07-28 00:04:31,036 | INFO     | could have reported an average CPU frequency of 2657 MHz (6 samples)
[2025-07-27 20:05:04] 2025-07-28 00:04:31,037 | INFO     | ..............................
[2025-07-27 20:05:04] 2025-07-28 00:04:31,037 | INFO     | . Timing measurements:
[2025-07-27 20:05:04] 2025-07-28 00:04:31,037 | INFO     | . get job = 0 s
[2025-07-27 20:05:04] 2025-07-28 00:04:31,037 | INFO     | . initial setup = 4 s
[2025-07-27 20:05:04] 2025-07-28 00:04:31,037 | INFO     | . payload setup = 8 s
[2025-07-27 20:05:04] 2025-07-28 00:04:31,037 | INFO     | . stage-in = 0 s
[2025-07-27 20:05:04] 2025-07-28 00:04:31,037 | INFO     | . payload execution = 4620 s
[2025-07-27 20:05:04] 2025-07-28 00:04:31,037 | INFO     | . stage-out = 0 s
[2025-07-27 20:05:04] 2025-07-28 00:04:31,037 | INFO     | . log creation = 0 s
[2025-07-27 20:05:04] 2025-07-28 00:04:31,037 | INFO     | ..............................
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | 
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | job summary report
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | --------------------------------------------------
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | PanDA job id: 6745061208
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | task id: 45743349
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | errors: (none)
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | pilot state: finished 
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | transexitcode: 0
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | exeerrorcode: 0
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | exeerrordiag: 
[2025-07-27 20:05:04] 2025-07-28 00:04:31,116 | INFO     | exitcode: 0
[2025-07-27 20:05:04] 2025-07-28 00:04:31,117 | INFO     | exitmsg: OK
[2025-07-27 20:05:04] 2025-07-28 00:04:31,117 | INFO     | cpuconsumptiontime: 49295 s
[2025-07-27 20:05:04] 2025-07-28 00:04:31,117 | INFO     | nevents: 400
[2025-07-27 20:05:04] 2025-07-28 00:04:31,117 | INFO     | neventsw: 0
[2025-07-27 20:05:04] 2025-07-28 00:04:31,117 | INFO     | pid: 1102973
[2025-07-27 20:05:04] 2025-07-28 00:04:31,117 | INFO     | pgrp: 1102973
[2025-07-27 20:05:04] 2025-07-28 00:04:31,117 | INFO     | corecount: 12
[2025-07-27 20:05:04] 2025-07-28 00:04:31,117 | INFO     | event service: False
[2025-07-27 20:05:04] 2025-07-28 00:04:31,117 | INFO     | sizes: {0: 2397304, 1: 2397503, 6: 2397765, 12: 2397793, 4632: 2423869, 4633: 2423868, 4634: 2433050, 4635: 2433106, 4640: 2433300}
[2025-07-27 20:05:04] 2025-07-28 00:04:31,117 | INFO     | --------------------------------------------------
[2025-07-27 20:05:04] 2025-07-28 00:04:31,117 | INFO     | 
[2025-07-27 20:05:04] 2025-07-28 00:04:31,118 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 20:05:04] 2025-07-28 00:04:31,137 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,138 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,138 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,138 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,138 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,138 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,138 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,138 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,138 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,138 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,138 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,138 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,139 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,139 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,139 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,139 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,139 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,139 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:05:04] 2025-07-28 00:04:31,139 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,139 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:05:04] 2025-07-28 00:04:31,139 | INFO     | job 6745061208 has completed (purged errors)
[2025-07-27 20:05:04] 2025-07-28 00:04:31,139 | INFO     | overall cleanup function is called
[2025-07-27 20:05:04] 2025-07-28 00:04:31,669 | INFO     | PID=1093567 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 20:05:04] 2025-07-28 00:04:31,669 | INFO     | .. there are 9 such processes running
[2025-07-27 20:05:04] 2025-07-28 00:04:32,148 | INFO     | --- collectZombieJob: --- 10, [1102973]
[2025-07-27 20:05:04] 2025-07-28 00:04:32,148 | INFO     | zombie collector waiting for pid 1102973
[2025-07-27 20:05:04] 2025-07-28 00:04:32,148 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:05:04] 2025-07-28 00:04:32,148 | INFO     | collected zombie processes
[2025-07-27 20:05:04] 2025-07-28 00:04:32,148 | INFO     | will attempt to kill all subprocesses of pid=1102973
[2025-07-27 20:05:04] 2025-07-28 00:04:32,410 | INFO     | process IDs to be killed: [1102973] (in reverse order)
[2025-07-27 20:05:04] 2025-07-28 00:04:32,511 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:05:04] 2025-07-28 00:04:32,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:05:04] 2025-07-28 00:04:32,522 | INFO     | did not find any defunct processes belonging to 1102973
[2025-07-27 20:05:04] 2025-07-28 00:04:32,535 | INFO     | did not find any defunct processes belonging to 1102973
[2025-07-27 20:05:04] 2025-07-28 00:04:32,535 | INFO     | ready for new job
[2025-07-27 20:05:04] 2025-07-28 00:04:32,536 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:05:04] 2025-07-28 00:04:32,538 | INFO     | ***************************************
[2025-07-27 20:05:04] 2025-07-28 00:04:32,538 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:05:04] 2025-07-28 00:04:32,538 | INFO     | ***************************************
[2025-07-27 20:05:04] 2025-07-28 00:04:32,538 | INFO     | 
[2025-07-27 20:05:04] 2025-07-28 00:04:32,554 | INFO     | architecture information:
[2025-07-27 20:05:04] 2025-07-28 00:04:32,555 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:05:04] 2025-07-28 00:04:32,571 | INFO     | cat /etc/os-release:
[2025-07-27 20:05:04] NAME="CentOS Linux"
[2025-07-27 20:05:04] VERSION="7 (Core)"
[2025-07-27 20:05:04] ID="centos"
[2025-07-27 20:05:04] ID_LIKE="rhel fedora"
[2025-07-27 20:05:04] VERSION_ID="7"
[2025-07-27 20:05:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:05:04] ANSI_COLOR="0;31"
[2025-07-27 20:05:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:05:04] HOME_URL="https://www.centos.org/"
[2025-07-27 20:05:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:05:04] 
[2025-07-27 20:05:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:05:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:05:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:05:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:05:04] 
[2025-07-27 20:05:04] 2025-07-28 00:04:32,572 | INFO     | ***************************************
[2025-07-27 20:05:04] 2025-07-28 00:04:33,074 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 20:05:04] 2025-07-28 00:04:33,094 | INFO     | sufficient remaining disk space (76355207168 B)
[2025-07-27 20:05:04] 2025-07-28 00:04:33,094 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:05:04] 2025-07-28 00:04:33,095 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:05:04] 2025-07-28 00:04:33,095 | INFO     | update_server=False
[2025-07-27 20:05:04] 2025-07-28 00:04:33,095 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:05:04] 2025-07-28 00:04:33,095 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:05:04] 2025-07-28 00:04:33,096 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:05:04] 2025-07-28 00:04:33,096 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:05:04] 2025-07-28 00:04:33,230 | INFO     | all payload control threads have been joined
[2025-07-27 20:05:04] 2025-07-28 00:04:33,351 | INFO     | all data control threads have been joined
[2025-07-27 20:05:04] 2025-07-28 00:04:33,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:05:04] 2025-07-28 00:04:33,367 | INFO     | aborting loop
[2025-07-27 20:05:04] 2025-07-28 00:04:34,100 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:34,102 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:34,134 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:34,235 | INFO     | [payload] control thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:34,324 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:34,356 | INFO     | [data] control thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:34,367 | INFO     | [job] validate thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:34,372 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:34,545 | INFO     | all job control threads have been joined
[2025-07-27 20:05:04] 2025-07-28 00:04:34,586 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:34,726 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:34,820 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:35,101 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:35,240 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:35,356 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:35,550 | INFO     | [job] control thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:37,102 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:05:04] 2025-07-28 00:04:37,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827169617728)>', '<ExcThread(monitor, started 139826535847680)>']
[2025-07-27 20:05:04] 2025-07-28 00:04:42,576 | INFO     | all workflow threads have been joined
[2025-07-27 20:05:04] 2025-07-28 00:04:42,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:05:04] 2025-07-28 00:04:42,577 | INFO     | traces error code: 0
[2025-07-27 20:05:04] 2025-07-28 00:04:42,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:05:04] 2025-07-28 00:05:04,136 | INFO     | PID=1093567 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:05:04] 2025-07-28 00:05:04,137 | INFO     | .. there are 9 such processes running
[2025-07-27 20:05:04] 2025-07-28 00:05:04,138 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:05:04] 2025-07-28 00:05:04,139 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:05:04] 2025-07-28 00:05:04,139 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:05:04] 2025-07-28 00:05:04,139 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:05:04] 2025-07-28 00:05:04,139 | INFO     | [monitor] control thread has ended
[2025-07-27 20:05:04] 2025-07-28 00:05:04,353 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:05:04] 2025-07-28 00:05:04,358 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:05:04] 2025-07-28 00:05:04,361 [wrapper] pilotpid: 1093567
[2025-07-27 20:05:04] 2025-07-28 00:05:04,364 [wrapper] Pilot exit status: 0
[2025-07-27 20:05:04] 2025-07-28 00:05:04,377 [wrapper] pandaids: 6745061208
[2025-07-27 20:05:04] 2025-07-28 00:05:04,453 [wrapper] cleanup supervisor_pilot 1329092 1093568
[2025-07-27 20:05:04] 2025-07-28 00:05:04,458 [wrapper] Test setup, not cleaning
[2025-07-27 20:05:04] 2025-07-28 00:05:04,462 [wrapper] apfmon messages muted
[2025-07-27 20:05:04] 2025-07-28 00:05:04,466 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:05:04] 2025-07-28 00:05:04,469 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:05:04]  *** Error codes and diagnostics ***
[2025-07-27 20:05:04]     "exeErrorCode": 0,
[2025-07-27 20:05:04]     "exeErrorDiag": "",
[2025-07-27 20:05:04]     "pilotErrorCode": 0,
[2025-07-27 20:05:04]     "pilotErrorDiag": "",
[2025-07-27 20:05:04]  *** Listing of results directory ***
[2025-07-27 20:05:04] total 430812
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 15:17 pilot3.tar.gz
[2025-07-27 20:05:04] -rwx------. 1 boincer umatlas     36292 Jul 25 16:02 runpilot2-wrapper.sh
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 16:02 queuedata.json
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas       100 Jul 27 18:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:05:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 18:46 run_atlas
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas       105 Jul 27 18:46 job.xml
[2025-07-27 20:05:04] -rw-r--r--. 2 boincer umatlas 229551850 Jul 27 18:46 EVNT.45743347._001469.pool.root.1
[2025-07-27 20:05:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:46 start_atlas.sh
[2025-07-27 20:05:04] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 18:46 shared
[2025-07-27 20:05:04] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 18:46 input.tar.gz
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas         0 Jul 27 18:46 boinc_lockfile
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 18:46 pandaJob.out
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas    980109 Jul 27 18:46 agis_schedconf.cvmfs.json
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:46 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:05:04] drwx------. 4 boincer umatlas      4096 Jul 27 18:46 pilot3
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 20:03 init_data.xml
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas 206043276 Jul 27 20:03 HITS.45743349._026373.pool.root.1
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas       530 Jul 27 20:03 boinc_task_state.xml
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas      1035 Jul 27 20:04 memory_monitor_summary.json
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas    377960 Jul 27 20:04 log.45743349._026373.job.log.tgz.1
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas      7822 Jul 27 20:04 heartbeat.json
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 20:04 boinc_mmap_file
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas        27 Jul 27 20:04 wrapper_checkpoint.txt
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas        95 Jul 27 20:05 pilot_heartbeat.json
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas       822 Jul 27 20:05 pilotlog.txt
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas    463738 Jul 27 20:05 log.45743349._026373.job.log.1
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas       357 Jul 27 20:05 output.list
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas       620 Jul 27 20:05 runtime_log
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas    860160 Jul 27 20:05 result.tar.gz
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas       654 Jul 27 20:05 ZJtKDm3ndz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmRXzKDmCfL9Do.diag
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 20:05 runtime_log.err
[2025-07-27 20:05:04] -rw-r--r--. 1 boincer umatlas     21854 Jul 27 20:05 stderr.txt
[2025-07-27 20:05:04] HITS file was successfully produced:
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas 206043276 Jul 27 20:03 shared/HITS.pool.root.1
[2025-07-27 20:05:04]  *** Contents of shared directory: ***
[2025-07-27 20:05:04] total 426780
[2025-07-27 20:05:04] -rw-r--r--. 2 boincer umatlas 229551850 Jul 27 18:46 ATLAS.root_0
[2025-07-27 20:05:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:46 start_atlas.sh
[2025-07-27 20:05:04] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 18:46 input.tar.gz
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas 206043276 Jul 27 20:03 HITS.pool.root.1
[2025-07-27 20:05:04] -rw-------. 1 boincer umatlas    860160 Jul 27 20:05 result.tar.gz
20:05:05 (1089878): run_atlas exited; CPU time 49358.886415
20:05:05 (1089878): called boinc_finish(0)

</stderr_txt>
]]>

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