Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:06:27 (72040): wrapper (7.7.26015): starting
17:06:27 (72040): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 17:06:27] Arguments: --nthreads 8
[2025-07-27 17:06:27] Threads: 8
[2025-07-27 17:06:27] Checking for CVMFS
[2025-07-27 17:06:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:06:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:06:28] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:06:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:06:28] 2.13.1.0 645510 14702 262136 148823 2 196 37062490 40960000 9765 16776704 0 51129994 99.792 41425441 36979 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 17:06:28] CVMFS is ok
[2025-07-27 17:06:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:06:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:06:28] Further information can be found at the LHC@home message board.
[2025-07-27 17:06:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:06:28] Checking for apptainer binary...
[2025-07-27 17:06:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:06:28] Running /usr/bin/apptainer --version
[2025-07-27 17:06:28] apptainer version 1.4.1-1.el9
[2025-07-27 17:06:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:06:28] c-212-5.aglt2.org
[2025-07-27 17:06:28] apptainer works
[2025-07-27 17:06:28] Set ATHENA_PROC_NUMBER=8
[2025-07-27 17:06:28] Set ATHENA_CORE_NUMBER=8
[2025-07-27 17:06:28] Starting ATLAS job with PandaID=6747128530
[2025-07-27 17:06:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:28:59]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:28:59]  protocol_id=None
[2025-07-27 18:28:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:28:59]  replicas=None
[2025-07-27 18:28:59]  scope=mc23_13p6TeV
[2025-07-27 18:28:59]  status=None
[2025-07-27 18:28:59]  status_code=0
[2025-07-27 18:28:59]  storage_token=
[2025-07-27 18:28:59]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6747128530/log.45743349._046612.job.log.tgz.1
[2025-07-27 18:28:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/91/log.45743349._046612.job.log.tgz.1
[2025-07-27 18:28:59]  workdir=None
[2025-07-27 18:28:59] ]
[2025-07-27 18:28:59] 2025-07-27 22:28:20,463 | INFO     | transferring file log.45743349._046612.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6747128530/log.45743349._046612.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 18:28:59] 2025-07-27 22:28:20,463 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6747128530/log.45743349._046612.job.log.tgz.1 /tmp/boinchome/slots/4/log.45743349._046612.job
[2025-07-27 18:28:59] 2025-07-27 22:28:20,491 | INFO     | adding to output.list: log.45743349._046612.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/91/log.45743349._046612.job.log.tg
[2025-07-27 18:28:59] 2025-07-27 22:28:20,492 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:28:59] 2025-07-27 22:28:20,492 | INFO     | summary of transferred files:
[2025-07-27 18:28:59] 2025-07-27 22:28:20,493 | INFO     |  -- lfn=log.45743349._046612.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:28:59] 2025-07-27 22:28:20,493 | INFO     | stage-out finished correctly
[2025-07-27 18:28:59] 2025-07-27 22:28:20,644 | WARNING  | process 82022 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 18:28:59] 2025-07-27 22:28:20,645 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6747128530/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:28:59] 2025-07-27 22:28:21,015 | INFO     | number of running child processes to parent process 82022: 1
[2025-07-27 18:28:59] 2025-07-27 22:28:21,016 | INFO     | maximum number of monitored processes: 6
[2025-07-27 18:28:59] 2025-07-27 22:28:21,602 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:28:59] 2025-07-27 22:28:21,686 | INFO     | job 6747128530 has state=finished
[2025-07-27 18:28:59] 2025-07-27 22:28:21,687 | INFO     | preparing for final server update for job 6747128530 in state='finished'
[2025-07-27 18:28:59] 2025-07-27 22:28:21,687 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:28:59] 2025-07-27 22:28:21,687 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:28:59] 2025-07-27 22:28:21,687 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:28:59] 2025-07-27 22:28:21,688 | INFO     | job 6747128530 has finished - writing final server update
[2025-07-27 18:28:59] 2025-07-27 22:28:21,688 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:28:59] 2025-07-27 22:28:21,689 | INFO     | executing command: lscpu
[2025-07-27 18:28:59] 2025-07-27 22:28:21,755 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:28:59] 2025-07-27 22:28:23,519 | INFO     | monitor loop #360: job 0:6747128530 is in state 'finished'
[2025-07-27 18:28:59] 2025-07-27 22:28:23,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:28:59] 2025-07-27 22:28:26,022 | INFO     | monitor loop #361: job 0:6747128530 is in state 'finished'
[2025-07-27 18:28:59] 2025-07-27 22:28:26,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:28:59] 2025-07-27 22:28:26,765 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:28:59] 2025-07-27 22:28:26,770 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3254.340354166666
[2025-07-27 18:28:59] 2025-07-27 22:28:26,785 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6747128530/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:28:59] 2025-07-27 22:28:26,785 | INFO     | extracted standard info from prmon json
[2025-07-27 18:28:59] 2025-07-27 22:28:26,786 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:28:59] 2025-07-27 22:28:26,786 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:28:59] 2025-07-27 22:28:26,786 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:28:59] 2025-07-27 22:28:26,786 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:28:59] 2025-07-27 22:28:26,787 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:28:59] 2025-07-27 22:28:26,788 | INFO     | sum of square deviations: 120605052.0
[2025-07-27 18:28:59] 2025-07-27 22:28:26,788 | INFO     | sum of deviations: 895804824.9999999
[2025-07-27 18:28:59] 2025-07-27 22:28:26,788 | INFO     | mean x: 1753652937.0
[2025-07-27 18:28:59] 2025-07-27 22:28:26,788 | INFO     | mean y: 2516837.1232876712
[2025-07-27 18:28:59] 2025-07-27 22:28:26,788 | INFO     | -- intersect: -13022897407.878826
[2025-07-27 18:28:59] 2025-07-27 22:28:26,788 | INFO     | intersect: -13022897407.878826
[2025-07-27 18:28:59] 2025-07-27 22:28:26,788 | INFO     | chi2: 0.0006585470066235355
[2025-07-27 18:28:59] 2025-07-27 22:28:26,789 | INFO     | -- intersect: -13022897407.878826
[2025-07-27 18:28:59] 2025-07-27 22:28:26,789 | INFO     | current memory leak: 7.43 B/s (using 73 data points, chi2=0.00)
[2025-07-27 18:28:59] 2025-07-27 22:28:26,789 | INFO     | could have reported an average CPU frequency of 3279 MHz (6 samples)
[2025-07-27 18:28:59] 2025-07-27 22:28:26,789 | INFO     | ..............................
[2025-07-27 18:28:59] 2025-07-27 22:28:26,789 | INFO     | . Timing measurements:
[2025-07-27 18:28:59] 2025-07-27 22:28:26,789 | INFO     | . get job = 0 s
[2025-07-27 18:28:59] 2025-07-27 22:28:26,789 | INFO     | . initial setup = 2 s
[2025-07-27 18:28:59] 2025-07-27 22:28:26,789 | INFO     | . payload setup = 9 s
[2025-07-27 18:28:59] 2025-07-27 22:28:26,790 | INFO     | . stage-in = 0 s
[2025-07-27 18:28:59] 2025-07-27 22:28:26,790 | INFO     | . payload execution = 4866 s
[2025-07-27 18:28:59] 2025-07-27 22:28:26,790 | INFO     | . stage-out = 0 s
[2025-07-27 18:28:59] 2025-07-27 22:28:26,790 | INFO     | . log creation = 0 s
[2025-07-27 18:28:59] 2025-07-27 22:28:26,790 | INFO     | ..............................
[2025-07-27 18:28:59] 2025-07-27 22:28:26,873 | INFO     | 
[2025-07-27 18:28:59] 2025-07-27 22:28:26,874 | INFO     | job summary report
[2025-07-27 18:28:59] 2025-07-27 22:28:26,874 | INFO     | --------------------------------------------------
[2025-07-27 18:28:59] 2025-07-27 22:28:26,874 | INFO     | PanDA job id: 6747128530
[2025-07-27 18:28:59] 2025-07-27 22:28:26,874 | INFO     | task id: 45743349
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | errors: (none)
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | pilot state: finished 
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | transexitcode: 0
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | exeerrorcode: 0
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | exeerrordiag: 
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | exitcode: 0
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | exitmsg: OK
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | cpuconsumptiontime: 35344 s
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | nevents: 400
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | neventsw: 0
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | pid: 82022
[2025-07-27 18:28:59] 2025-07-27 22:28:26,875 | INFO     | pgrp: 82022
[2025-07-27 18:28:59] 2025-07-27 22:28:26,876 | INFO     | corecount: 8
[2025-07-27 18:28:59] 2025-07-27 22:28:26,876 | INFO     | event service: False
[2025-07-27 18:28:59] 2025-07-27 22:28:26,876 | INFO     | sizes: {0: 2397254, 1: 2397453, 7: 2397715, 11: 2397743, 4879: 2423932, 4880: 2433113, 4882: 2433113, 4887: 2433307}
[2025-07-27 18:28:59] 2025-07-27 22:28:26,876 | INFO     | --------------------------------------------------
[2025-07-27 18:28:59] 2025-07-27 22:28:26,876 | INFO     | 
[2025-07-27 18:28:59] 2025-07-27 22:28:26,876 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-07-27 18:28:59] 2025-07-27 22:28:26,900 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,900 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,900 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,900 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,900 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,900 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,900 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,900 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,900 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:28:59] 2025-07-27 22:28:26,901 | INFO     | job 6747128530 has completed (purged errors)
[2025-07-27 18:28:59] 2025-07-27 22:28:26,902 | INFO     | overall cleanup function is called
[2025-07-27 18:28:59] 2025-07-27 22:28:27,909 | INFO     | --- collectZombieJob: --- 10, [82022]
[2025-07-27 18:28:59] 2025-07-27 22:28:27,910 | INFO     | zombie collector waiting for pid 82022
[2025-07-27 18:28:59] 2025-07-27 22:28:27,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:28:59] 2025-07-27 22:28:27,910 | INFO     | collected zombie processes
[2025-07-27 18:28:59] 2025-07-27 22:28:27,910 | INFO     | will attempt to kill all subprocesses of pid=82022
[2025-07-27 18:28:59] 2025-07-27 22:28:28,282 | INFO     | process IDs to be killed: [82022] (in reverse order)
[2025-07-27 18:28:59] 2025-07-27 22:28:28,391 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:28:59] 2025-07-27 22:28:28,392 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:28:59] 2025-07-27 22:28:28,404 | INFO     | did not find any defunct processes belonging to 82022
[2025-07-27 18:28:59] 2025-07-27 22:28:28,414 | INFO     | did not find any defunct processes belonging to 82022
[2025-07-27 18:28:59] 2025-07-27 22:28:28,414 | INFO     | ready for new job
[2025-07-27 18:28:59] 2025-07-27 22:28:28,414 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:28:59] 2025-07-27 22:28:28,416 | INFO     | ***************************************
[2025-07-27 18:28:59] 2025-07-27 22:28:28,416 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:28:59] 2025-07-27 22:28:28,416 | INFO     | ***************************************
[2025-07-27 18:28:59] 2025-07-27 22:28:28,416 | INFO     | 
[2025-07-27 18:28:59] 2025-07-27 22:28:28,421 | INFO     | architecture information:
[2025-07-27 18:28:59] 2025-07-27 22:28:28,421 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:28:59] 2025-07-27 22:28:28,438 | INFO     | cat /etc/os-release:
[2025-07-27 18:28:59] NAME="CentOS Linux"
[2025-07-27 18:28:59] VERSION="7 (Core)"
[2025-07-27 18:28:59] ID="centos"
[2025-07-27 18:28:59] ID_LIKE="rhel fedora"
[2025-07-27 18:28:59] VERSION_ID="7"
[2025-07-27 18:28:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:28:59] ANSI_COLOR="0;31"
[2025-07-27 18:28:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:28:59] HOME_URL="https://www.centos.org/"
[2025-07-27 18:28:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:28:59] 
[2025-07-27 18:28:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:28:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:28:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:28:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:28:59] 
[2025-07-27 18:28:59] 2025-07-27 22:28:28,439 | INFO     | ***************************************
[2025-07-27 18:28:59] 2025-07-27 22:28:28,941 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-07-27 18:28:59] 2025-07-27 22:28:28,959 | INFO     | sufficient remaining disk space (124487991296 B)
[2025-07-27 18:28:59] 2025-07-27 22:28:28,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:28:59] 2025-07-27 22:28:28,960 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:28:59] 2025-07-27 22:28:28,960 | INFO     | update_server=False
[2025-07-27 18:28:59] 2025-07-27 22:28:28,960 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:28:59] 2025-07-27 22:28:28,960 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:28:59] 2025-07-27 22:28:29,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:28:59] 2025-07-27 22:28:29,531 | INFO     | aborting loop
[2025-07-27 18:28:59] 2025-07-27 22:28:29,547 | INFO     | all payload control threads have been joined
[2025-07-27 18:28:59] 2025-07-27 22:28:29,649 | INFO     | all data control threads have been joined
[2025-07-27 18:28:59] 2025-07-27 22:28:29,965 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:30,239 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:30,381 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:30,400 | INFO     | all job control threads have been joined
[2025-07-27 18:28:59] 2025-07-27 22:28:30,533 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:30,553 | INFO     | [payload] control thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:30,655 | INFO     | [data] control thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:30,679 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:30,832 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:30,953 | INFO     | [job] validate thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:30,967 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:31,135 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:31,150 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:31,406 | INFO     | [job] control thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:31,884 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:28:59] 2025-07-27 22:28:32,194 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:28:59] 2025-07-27 22:28:32,889 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:36,201 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:39,377 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:28:59] 2025-07-27 22:28:40,385 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:28:59] 2025-07-27 22:28:41,118 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140429564077888)>', '<ExcThread(monitor, started 140428821116672)>']
[2025-07-27 18:28:59] 2025-07-27 22:28:46,144 | INFO     | all workflow threads have been joined
[2025-07-27 18:28:59] 2025-07-27 22:28:46,144 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:28:59] 2025-07-27 22:28:46,145 | INFO     | traces error code: 0
[2025-07-27 18:28:59] 2025-07-27 22:28:46,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:28:59] 2025-07-27 22:28:59,315 | INFO     | PID=75617 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 18:28:59] 2025-07-27 22:28:59,315 | INFO     | .. there are 15 such processes running
[2025-07-27 18:28:59] 2025-07-27 22:28:59,316 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:28:59] 2025-07-27 22:28:59,316 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:28:59] 2025-07-27 22:28:59,316 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:28:59] 2025-07-27 22:28:59,316 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:28:59] 2025-07-27 22:28:59,316 | INFO     | [monitor] control thread has ended
[2025-07-27 18:28:59] 2025-07-27 22:28:59,396 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:28:59] 2025-07-27 22:28:59,402 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:28:59] 2025-07-27 22:28:59,406 [wrapper] pilotpid: 75617
[2025-07-27 18:28:59] 2025-07-27 22:28:59,410 [wrapper] Pilot exit status: 0
[2025-07-27 18:28:59] 2025-07-27 22:28:59,423 [wrapper] pandaids: 6747128530
[2025-07-27 18:28:59] 2025-07-27 22:28:59,502 [wrapper] cleanup supervisor_pilot  380157 75618
[2025-07-27 18:28:59] 2025-07-27 22:28:59,506 [wrapper] Test setup, not cleaning
[2025-07-27 18:28:59] 2025-07-27 22:28:59,512 [wrapper] apfmon messages muted
[2025-07-27 18:28:59] 2025-07-27 22:28:59,515 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:28:59] 2025-07-27 22:28:59,519 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:28:59]  *** Error codes and diagnostics ***
[2025-07-27 18:28:59]     "exeErrorCode": 0,
[2025-07-27 18:28:59]     "exeErrorDiag": "",
[2025-07-27 18:28:59]     "pilotErrorCode": 0,
[2025-07-27 18:28:59]     "pilotErrorDiag": "",
[2025-07-27 18:28:59]  *** Listing of results directory ***
[2025-07-27 18:28:59] total 355056
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 05:06 pilot3.tar.gz
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 05:40 queuedata.json
[2025-07-27 18:28:59] -rwx------. 1 boincer umatlas     36292 Jul 27 05:42 runpilot2-wrapper.sh
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:28:59] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:06 run_atlas
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:06 job.xml
[2025-07-27 18:28:59] -rw-r--r--. 2 boincer umatlas 147985757 Jul 27 17:06 EVNT.45743347._001624.pool.root.1
[2025-07-27 18:28:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:06 start_atlas.sh
[2025-07-27 18:28:59] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:06 shared
[2025-07-27 18:28:59] -rw-r--r--. 2 boincer umatlas    542905 Jul 27 17:06 input.tar.gz
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:06 boinc_lockfile
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 17:06 pandaJob.out
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas    980109 Jul 27 17:06 agis_schedconf.cvmfs.json
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:06 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:28:59] drwx------. 4 boincer umatlas      4096 Jul 27 17:06 pilot3
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas      6946 Jul 27 18:20 init_data.xml
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas 210157168 Jul 27 18:27 HITS.45743349._046612.pool.root.1
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas       529 Jul 27 18:27 boinc_task_state.xml
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas      1026 Jul 27 18:28 memory_monitor_summary.json
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas    299169 Jul 27 18:28 log.45743349._046612.job.log.tgz.1
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas      7763 Jul 27 18:28 heartbeat.json
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas        27 Jul 27 18:28 wrapper_checkpoint.txt
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas       821 Jul 27 18:28 pilotlog.txt
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas        95 Jul 27 18:28 pilot_heartbeat.json
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:28 boinc_mmap_file
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas    477904 Jul 27 18:28 log.45743349._046612.job.log.1
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas       357 Jul 27 18:28 output.list
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:28 runtime_log
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas    798720 Jul 27 18:28 result.tar.gz
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas       650 Jul 27 18:28 tS7NDmW4C07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtwULDmfldXNo.diag
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 18:28 runtime_log.err
[2025-07-27 18:28:59] -rw-r--r--. 1 boincer umatlas     21816 Jul 27 18:28 stderr.txt
[2025-07-27 18:28:59] HITS file was successfully produced:
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas 210157168 Jul 27 18:27 shared/HITS.pool.root.1
[2025-07-27 18:28:59]  *** Contents of shared directory: ***
[2025-07-27 18:28:59] total 351088
[2025-07-27 18:28:59] -rw-r--r--. 2 boincer umatlas 147985757 Jul 27 17:06 ATLAS.root_0
[2025-07-27 18:28:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:06 start_atlas.sh
[2025-07-27 18:28:59] -rw-r--r--. 2 boincer umatlas    542905 Jul 27 17:06 input.tar.gz
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas 210157168 Jul 27 18:27 HITS.pool.root.1
[2025-07-27 18:28:59] -rw-------. 1 boincer umatlas    798720 Jul 27 18:28 result.tar.gz
18:29:00 (72040): run_atlas exited; CPU time 35464.174942
18:29:00 (72040): called boinc_finish(0)

</stderr_txt>
]]>

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