Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:00:56 (316709): wrapper (7.7.26015): starting
17:00:56 (316709): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 17:00:56] Arguments: --nthreads 8
[2025-07-27 17:00:56] Threads: 8
[2025-07-27 17:00:56] Checking for CVMFS
[2025-07-27 17:00:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:00:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:00:56] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:00:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:00:56] 2.12.6.0 3576101 18876 378212 148823 2 452 26529950 40960000 14089 16776704 0 62698377 99.864 68612177 24666 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 17:00:56] CVMFS is ok
[2025-07-27 17:00:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:00:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:00:56] Further information can be found at the LHC@home message board.
[2025-07-27 17:00:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:00:56] Checking for apptainer binary...
[2025-07-27 17:00:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:00:56] Running /usr/bin/apptainer --version
[2025-07-27 17:00:56] apptainer version 1.4.1-1.el9
[2025-07-27 17:00:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:00:57] c7-11-12.aglt2.org
[2025-07-27 17:00:57] apptainer works
[2025-07-27 17:00:57] Set ATHENA_PROC_NUMBER=8
[2025-07-27 17:00:57] Set ATHENA_CORE_NUMBER=8
[2025-07-27 17:00:57] Starting ATLAS job with PandaID=6747524986
[2025-07-27 17:00:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:25:04]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:25:04]  protocol_id=None
[2025-07-27 18:25:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:25:04]  replicas=None
[2025-07-27 18:25:04]  scope=mc23_13p6TeV
[2025-07-27 18:25:04]  status=None
[2025-07-27 18:25:04]  status_code=0
[2025-07-27 18:25:04]  storage_token=
[2025-07-27 18:25:04]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747524986/log.45743349._051899.job.log.tgz.1
[2025-07-27 18:25:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/41/9a/log.45743349._051899.job.log.tgz.1
[2025-07-27 18:25:04]  workdir=None
[2025-07-27 18:25:04] ]
[2025-07-27 18:25:04] 2025-07-27 22:24:23,573 | INFO     | transferring file log.45743349._051899.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747524986/log.45743349._051899.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 18:25:04] 2025-07-27 22:24:23,573 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747524986/log.45743349._051899.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._051899.job
[2025-07-27 18:25:04] 2025-07-27 22:24:23,598 | INFO     | adding to output.list: log.45743349._051899.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/41/9a/log.45743349._051899.job.log.tg
[2025-07-27 18:25:04] 2025-07-27 22:24:23,599 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:25:04] 2025-07-27 22:24:23,599 | INFO     | summary of transferred files:
[2025-07-27 18:25:04] 2025-07-27 22:24:23,599 | INFO     |  -- lfn=log.45743349._051899.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:25:04] 2025-07-27 22:24:23,599 | INFO     | stage-out finished correctly
[2025-07-27 18:25:04] 2025-07-27 22:24:23,880 | INFO     | monitor loop #368: job 0:6747524986 is in state 'finished'
[2025-07-27 18:25:04] 2025-07-27 22:24:23,881 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:25:04] 2025-07-27 22:24:24,916 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:25:04] 2025-07-27 22:24:25,948 | INFO     | job 6747524986 has state=finished
[2025-07-27 18:25:04] 2025-07-27 22:24:25,949 | INFO     | preparing for final server update for job 6747524986 in state='finished'
[2025-07-27 18:25:04] 2025-07-27 22:24:25,949 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:25:04] 2025-07-27 22:24:25,949 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:25:04] 2025-07-27 22:24:25,949 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:25:04] 2025-07-27 22:24:25,949 | INFO     | job 6747524986 has finished - writing final server update
[2025-07-27 18:25:04] 2025-07-27 22:24:25,950 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:25:04] 2025-07-27 22:24:25,950 | INFO     | executing command: lscpu
[2025-07-27 18:25:04] 2025-07-27 22:24:26,006 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:25:04] 2025-07-27 22:24:26,384 | INFO     | monitor loop #369: job 0:6747524986 is in state 'finished'
[2025-07-27 18:25:04] 2025-07-27 22:24:26,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:25:04] 2025-07-27 22:24:27,764 | INFO     | PID=320372 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 18:25:04] 2025-07-27 22:24:27,764 | INFO     | .. there are 23 such processes running
[2025-07-27 18:25:04] 2025-07-27 22:24:28,887 | INFO     | monitor loop #370: job 0:6747524986 is in state 'finished'
[2025-07-27 18:25:04] 2025-07-27 22:24:28,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:25:04] 2025-07-27 22:24:30,775 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:25:04] 2025-07-27 22:24:30,794 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3249.077890625001
[2025-07-27 18:25:04] 2025-07-27 22:24:30,804 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747524986/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:25:04] 2025-07-27 22:24:30,805 | INFO     | extracted standard info from prmon json
[2025-07-27 18:25:04] 2025-07-27 22:24:30,805 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:25:04] 2025-07-27 22:24:30,805 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:25:04] 2025-07-27 22:24:30,806 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:25:04] 2025-07-27 22:24:30,806 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:25:04] 2025-07-27 22:24:30,807 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:25:04] 2025-07-27 22:24:30,807 | INFO     | sum of square deviations: 130793150.0
[2025-07-27 18:25:04] 2025-07-27 22:24:30,808 | INFO     | sum of deviations: -1085357689.0000002
[2025-07-27 18:25:04] 2025-07-27 22:24:30,808 | INFO     | mean x: 1753652662.0
[2025-07-27 18:25:04] 2025-07-27 22:24:30,808 | INFO     | mean y: 2201802.7733333334
[2025-07-27 18:25:04] 2025-07-27 22:24:30,808 | INFO     | -- intersect: 14554496021.063957
[2025-07-27 18:25:04] 2025-07-27 22:24:30,808 | INFO     | intersect: 14554496021.063957
[2025-07-27 18:25:04] 2025-07-27 22:24:30,808 | INFO     | chi2: 0.03707163665777648
[2025-07-27 18:25:04] 2025-07-27 22:24:30,808 | INFO     | -- intersect: 14554496021.063957
[2025-07-27 18:25:04] 2025-07-27 22:24:30,808 | INFO     | current memory leak: -8.30 B/s (using 75 data points, chi2=0.04)
[2025-07-27 18:25:04] 2025-07-27 22:24:30,808 | INFO     | could have reported an average CPU frequency of 3256 MHz (6 samples)
[2025-07-27 18:25:04] 2025-07-27 22:24:30,809 | INFO     | ..............................
[2025-07-27 18:25:04] 2025-07-27 22:24:30,809 | INFO     | . Timing measurements:
[2025-07-27 18:25:04] 2025-07-27 22:24:30,809 | INFO     | . get job = 0 s
[2025-07-27 18:25:04] 2025-07-27 22:24:30,809 | INFO     | . initial setup = 2 s
[2025-07-27 18:25:04] 2025-07-27 22:24:30,809 | INFO     | . payload setup = 8 s
[2025-07-27 18:25:04] 2025-07-27 22:24:30,809 | INFO     | . stage-in = 0 s
[2025-07-27 18:25:04] 2025-07-27 22:24:30,809 | INFO     | . payload execution = 4965 s
[2025-07-27 18:25:04] 2025-07-27 22:24:30,809 | INFO     | . stage-out = 0 s
[2025-07-27 18:25:04] 2025-07-27 22:24:30,809 | INFO     | . log creation = 0 s
[2025-07-27 18:25:04] 2025-07-27 22:24:30,809 | INFO     | ..............................
[2025-07-27 18:25:04] 2025-07-27 22:24:30,881 | INFO     | 
[2025-07-27 18:25:04] 2025-07-27 22:24:30,881 | INFO     | job summary report
[2025-07-27 18:25:04] 2025-07-27 22:24:30,881 | INFO     | --------------------------------------------------
[2025-07-27 18:25:04] 2025-07-27 22:24:30,881 | INFO     | PanDA job id: 6747524986
[2025-07-27 18:25:04] 2025-07-27 22:24:30,881 | INFO     | task id: 45743349
[2025-07-27 18:25:04] 2025-07-27 22:24:30,881 | INFO     | errors: (none)
[2025-07-27 18:25:04] 2025-07-27 22:24:30,881 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:25:04] 2025-07-27 22:24:30,881 | INFO     | pilot state: finished 
[2025-07-27 18:25:04] 2025-07-27 22:24:30,881 | INFO     | transexitcode: 0
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | exeerrorcode: 0
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | exeerrordiag: 
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | exitcode: 0
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | exitmsg: OK
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | cpuconsumptiontime: 36481 s
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | nevents: 400
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | neventsw: 0
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | pid: 326839
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | pgrp: 326839
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | corecount: 8
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | event service: False
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | sizes: {0: 2396647, 1: 2397503, 6: 2397765, 12: 2397793, 4977: 2424040, 4978: 2433038, 4979: 2433222, 4985: 2433416}
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | --------------------------------------------------
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | 
[2025-07-27 18:25:04] 2025-07-27 22:24:30,882 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 18:25:04] 2025-07-27 22:24:30,905 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,906 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,906 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,906 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,906 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,906 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,906 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,907 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,907 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,907 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,907 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,907 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,907 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,907 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:25:04] 2025-07-27 22:24:30,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,907 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:25:04] 2025-07-27 22:24:30,908 | INFO     | job 6747524986 has completed (purged errors)
[2025-07-27 18:25:04] 2025-07-27 22:24:30,908 | INFO     | overall cleanup function is called
[2025-07-27 18:25:04] 2025-07-27 22:24:31,916 | INFO     | --- collectZombieJob: --- 10, [326839]
[2025-07-27 18:25:04] 2025-07-27 22:24:31,916 | INFO     | zombie collector waiting for pid 326839
[2025-07-27 18:25:04] 2025-07-27 22:24:31,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:25:04] 2025-07-27 22:24:31,916 | INFO     | collected zombie processes
[2025-07-27 18:25:04] 2025-07-27 22:24:31,916 | INFO     | will attempt to kill all subprocesses of pid=326839
[2025-07-27 18:25:04] 2025-07-27 22:24:32,222 | INFO     | process IDs to be killed: [326839] (in reverse order)
[2025-07-27 18:25:04] 2025-07-27 22:24:32,333 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:25:04] 2025-07-27 22:24:32,333 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:25:04] 2025-07-27 22:24:32,346 | INFO     | did not find any defunct processes belonging to 326839
[2025-07-27 18:25:04] 2025-07-27 22:24:32,359 | INFO     | did not find any defunct processes belonging to 326839
[2025-07-27 18:25:04] 2025-07-27 22:24:32,359 | INFO     | ready for new job
[2025-07-27 18:25:04] 2025-07-27 22:24:32,359 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:25:04] 2025-07-27 22:24:32,361 | INFO     | ***************************************
[2025-07-27 18:25:04] 2025-07-27 22:24:32,361 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:25:04] 2025-07-27 22:24:32,361 | INFO     | ***************************************
[2025-07-27 18:25:04] 2025-07-27 22:24:32,361 | INFO     | 
[2025-07-27 18:25:04] 2025-07-27 22:24:32,376 | INFO     | architecture information:
[2025-07-27 18:25:04] 2025-07-27 22:24:32,376 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:25:04] 2025-07-27 22:24:32,394 | INFO     | cat /etc/os-release:
[2025-07-27 18:25:04] NAME="CentOS Linux"
[2025-07-27 18:25:04] VERSION="7 (Core)"
[2025-07-27 18:25:04] ID="centos"
[2025-07-27 18:25:04] ID_LIKE="rhel fedora"
[2025-07-27 18:25:04] VERSION_ID="7"
[2025-07-27 18:25:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:25:04] ANSI_COLOR="0;31"
[2025-07-27 18:25:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:25:04] HOME_URL="https://www.centos.org/"
[2025-07-27 18:25:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:25:04] 
[2025-07-27 18:25:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:25:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:25:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:25:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:25:04] 
[2025-07-27 18:25:04] 2025-07-27 22:24:32,394 | INFO     | ***************************************
[2025-07-27 18:25:04] 2025-07-27 22:24:32,897 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 18:25:04] 2025-07-27 22:24:32,918 | INFO     | sufficient remaining disk space (85886763008 B)
[2025-07-27 18:25:04] 2025-07-27 22:24:32,918 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:25:04] 2025-07-27 22:24:32,918 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:25:04] 2025-07-27 22:24:32,918 | INFO     | update_server=False
[2025-07-27 18:25:04] 2025-07-27 22:24:32,919 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:25:04] 2025-07-27 22:24:32,919 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:25:04] 2025-07-27 22:24:32,919 | INFO     | aborting loop
[2025-07-27 18:25:04] 2025-07-27 22:24:32,956 | INFO     | all payload control threads have been joined
[2025-07-27 18:25:04] 2025-07-27 22:24:33,641 | INFO     | all data control threads have been joined
[2025-07-27 18:25:04] 2025-07-27 22:24:33,924 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:33,925 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:33,957 | INFO     | [payload] control thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:34,111 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:34,148 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:34,156 | INFO     | all job control threads have been joined
[2025-07-27 18:25:04] 2025-07-27 22:24:34,192 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:25:04] 2025-07-27 22:24:34,551 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:34,647 | INFO     | [data] control thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:35,097 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:35,100 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:35,161 | INFO     | [job] control thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:35,374 | INFO     | [job] validate thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:35,400 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:35,496 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:25:04] 2025-07-27 22:24:35,891 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:25:04] 2025-07-27 22:24:36,198 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:36,896 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:39,503 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:43,677 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:25:04] 2025-07-27 22:24:44,685 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:25:04] 2025-07-27 22:24:45,226 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140525192554304)>', '<ExcThread(monitor, started 140524342208256)>']
[2025-07-27 18:25:04] 2025-07-27 22:24:50,244 | INFO     | all workflow threads have been joined
[2025-07-27 18:25:04] 2025-07-27 22:24:50,245 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:25:04] 2025-07-27 22:24:50,245 | INFO     | traces error code: 0
[2025-07-27 18:25:04] 2025-07-27 22:24:50,245 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:25:04] 2025-07-27 22:25:04,283 | INFO     | PID=320372 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 18:25:04] 2025-07-27 22:25:04,283 | INFO     | .. there are 23 such processes running
[2025-07-27 18:25:04] 2025-07-27 22:25:04,284 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:25:04] 2025-07-27 22:25:04,284 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:25:04] 2025-07-27 22:25:04,284 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:25:04] 2025-07-27 22:25:04,284 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:25:04] 2025-07-27 22:25:04,284 | INFO     | [monitor] control thread has ended
[2025-07-27 18:25:04] 2025-07-27 22:25:04,423 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:25:04] 2025-07-27 22:25:04,429 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:25:04] 2025-07-27 22:25:04,434 [wrapper] pilotpid: 320372
[2025-07-27 18:25:04] 2025-07-27 22:25:04,438 [wrapper] Pilot exit status: 0
[2025-07-27 18:25:04] 2025-07-27 22:25:04,455 [wrapper] pandaids: 6747524986
[2025-07-27 18:25:04] 2025-07-27 22:25:04,536 [wrapper] cleanup supervisor_pilot  557544 320373
[2025-07-27 18:25:04] 2025-07-27 22:25:04,541 [wrapper] Test setup, not cleaning
[2025-07-27 18:25:04] 2025-07-27 22:25:04,545 [wrapper] apfmon messages muted
[2025-07-27 18:25:04] 2025-07-27 22:25:04,549 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:25:04] 2025-07-27 22:25:04,552 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:25:04]  *** Error codes and diagnostics ***
[2025-07-27 18:25:04]     "exeErrorCode": 0,
[2025-07-27 18:25:04]     "exeErrorDiag": "",
[2025-07-27 18:25:04]     "pilotErrorCode": 0,
[2025-07-27 18:25:04]     "pilotErrorDiag": "",
[2025-07-27 18:25:04]  *** Listing of results directory ***
[2025-07-27 18:25:04] total 434756
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 11:40 pilot3.tar.gz
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:43 queuedata.json
[2025-07-27 18:25:04] -rwx------. 1 boincer umatlas     36292 Jul 27 11:44 runpilot2-wrapper.sh
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:25:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:00 run_atlas
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:00 job.xml
[2025-07-27 18:25:04] -rw-r--r--. 2 boincer umatlas 232047861 Jul 27 17:00 EVNT.45743347._002833.pool.root.1
[2025-07-27 18:25:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:00 start_atlas.sh
[2025-07-27 18:25:04] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:00 shared
[2025-07-27 18:25:04] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 17:00 input.tar.gz
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:00 boinc_lockfile
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 17:00 pandaJob.out
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas    980109 Jul 27 17:01 agis_schedconf.cvmfs.json
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:01 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:25:04] drwx------. 4 boincer umatlas      4096 Jul 27 17:01 pilot3
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas      6897 Jul 27 18:22 init_data.xml
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas 207644294 Jul 27 18:23 HITS.45743349._051899.pool.root.1
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas       529 Jul 27 18:23 boinc_task_state.xml
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas      1026 Jul 27 18:24 memory_monitor_summary.json
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas    321582 Jul 27 18:24 log.45743349._051899.job.log.tgz.1
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas      7768 Jul 27 18:24 heartbeat.json
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas        27 Jul 27 18:25 wrapper_checkpoint.txt
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:25 boinc_mmap_file
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas       822 Jul 27 18:25 pilotlog.txt
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas        95 Jul 27 18:25 pilot_heartbeat.json
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas    488202 Jul 27 18:25 log.45743349._051899.job.log.1
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas       357 Jul 27 18:25 output.list
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:25 runtime_log
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas    829440 Jul 27 18:25 result.tar.gz
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas       652 Jul 27 18:25 VTMLDmajI07n9Rq4apOajLDm4fhM0noT9bVof3QYDm2k2KDm7llZIn.diag
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 18:25 runtime_log.err
[2025-07-27 18:25:04] -rw-r--r--. 1 boincer umatlas     21890 Jul 27 18:25 stderr.txt
[2025-07-27 18:25:04] HITS file was successfully produced:
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas 207644294 Jul 27 18:23 shared/HITS.pool.root.1
[2025-07-27 18:25:04]  *** Contents of shared directory: ***
[2025-07-27 18:25:04] total 430756
[2025-07-27 18:25:04] -rw-r--r--. 2 boincer umatlas 232047861 Jul 27 17:00 ATLAS.root_0
[2025-07-27 18:25:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:00 start_atlas.sh
[2025-07-27 18:25:04] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 17:00 input.tar.gz
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas 207644294 Jul 27 18:23 HITS.pool.root.1
[2025-07-27 18:25:04] -rw-------. 1 boincer umatlas    829440 Jul 27 18:25 result.tar.gz
18:25:06 (316709): run_atlas exited; CPU time 36532.577982
18:25:06 (316709): called boinc_finish(0)

</stderr_txt>
]]>

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