Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:23:47 (2176636): wrapper (7.7.26015): starting
18:23:47 (2176636): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 18:23:47] Arguments: --nthreads 12
[2025-07-27 18:23:47] Threads: 12
[2025-07-27 18:23:47] Checking for CVMFS
[2025-07-27 18:23:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:23:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:23:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:23:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:23:48] 2.13.0.0 633399 18959 315320 148827 0 65 27815859 32935937 8189 16776704 1 37475348 99.548 80565121 30945 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 18:23:48] CVMFS is ok
[2025-07-27 18:23:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:23:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:23:48] Further information can be found at the LHC@home message board.
[2025-07-27 18:23:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:23:48] Checking for apptainer binary...
[2025-07-27 18:23:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:23:48] Running /usr/bin/apptainer --version
[2025-07-27 18:23:48] apptainer version 1.4.1-1.el9
[2025-07-27 18:23:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:23:48] c6-6-39-1.aglt2.org
[2025-07-27 18:23:48] apptainer works
[2025-07-27 18:23:48] Set ATHENA_PROC_NUMBER=12
[2025-07-27 18:23:48] Set ATHENA_CORE_NUMBER=12
[2025-07-27 18:23:48] Starting ATLAS job with PandaID=6747524977
[2025-07-27 18:23:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:31:54]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:31:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 19:31:54]  replicas=None
[2025-07-27 19:31:54]  scope=mc23_13p6TeV
[2025-07-27 19:31:54]  status=None
[2025-07-27 19:31:54]  status_code=0
[2025-07-27 19:31:54]  storage_token=
[2025-07-27 19:31:54]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747524977/log.45743349._051890.job.log.tgz.1
[2025-07-27 19:31:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/37/log.45743349._051890.job.log.tgz.1
[2025-07-27 19:31:54]  workdir=None
[2025-07-27 19:31:54] ]
[2025-07-27 19:31:54] 2025-07-27 23:31:15,613 | INFO     | transferring file log.45743349._051890.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747524977/log.45743349._051890.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:31:54] 2025-07-27 23:31:15,613 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747524977/log.45743349._051890.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._051890.job
[2025-07-27 19:31:54] 2025-07-27 23:31:15,632 | INFO     | adding to output.list: log.45743349._051890.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/37/log.45743349._051890.job.log.tg
[2025-07-27 19:31:54] 2025-07-27 23:31:15,633 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:31:54] 2025-07-27 23:31:15,634 | INFO     | summary of transferred files:
[2025-07-27 19:31:54] 2025-07-27 23:31:15,634 | INFO     |  -- lfn=log.45743349._051890.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:31:54] 2025-07-27 23:31:15,634 | INFO     | stage-out finished correctly
[2025-07-27 19:31:54] 2025-07-27 23:31:16,594 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:31:54] 2025-07-27 23:31:16,673 | INFO     | job 6747524977 has state=finished
[2025-07-27 19:31:54] 2025-07-27 23:31:16,674 | INFO     | preparing for final server update for job 6747524977 in state='finished'
[2025-07-27 19:31:54] 2025-07-27 23:31:16,730 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 19:31:54] 2025-07-27 23:31:16,731 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:31:54] 2025-07-27 23:31:16,731 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:31:54] 2025-07-27 23:31:16,731 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:31:54] 2025-07-27 23:31:16,731 | INFO     | job 6747524977 has finished - writing final server update
[2025-07-27 19:31:54] 2025-07-27 23:31:16,731 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:31:54] 2025-07-27 23:31:16,732 | INFO     | executing command: lscpu
[2025-07-27 19:31:54] 2025-07-27 23:31:16,788 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:31:54] 2025-07-27 23:31:17,981 | WARNING  | process 2189335 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 19:31:54] 2025-07-27 23:31:17,982 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747524977/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:31:54] 2025-07-27 23:31:18,206 | INFO     | number of running child processes to parent process 2189335: 1
[2025-07-27 19:31:54] 2025-07-27 23:31:18,206 | INFO     | maximum number of monitored processes: 6
[2025-07-27 19:31:54] 2025-07-27 23:31:20,709 | INFO     | monitor loop #300: job 0:6747524977 is in state 'finished'
[2025-07-27 19:31:54] 2025-07-27 23:31:20,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:31:54] 2025-07-27 23:31:21,133 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 19:31:54] 2025-07-27 23:31:21,140 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2920.036321428571
[2025-07-27 19:31:54] 2025-07-27 23:31:21,149 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747524977/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:31:54] 2025-07-27 23:31:21,150 | INFO     | extracted standard info from prmon json
[2025-07-27 19:31:54] 2025-07-27 23:31:21,150 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:31:54] 2025-07-27 23:31:21,150 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:31:54] 2025-07-27 23:31:21,151 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:31:54] 2025-07-27 23:31:21,151 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:31:54] 2025-07-27 23:31:21,152 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:31:54] 2025-07-27 23:31:21,153 | INFO     | sum of square deviations: 63666310.0
[2025-07-27 19:31:54] 2025-07-27 23:31:21,153 | INFO     | sum of deviations: -6699800556.0
[2025-07-27 19:31:54] 2025-07-27 23:31:21,153 | INFO     | mean x: 1753657145.0
[2025-07-27 19:31:54] 2025-07-27 23:31:21,153 | INFO     | mean y: 2696179.084745763
[2025-07-27 19:31:54] 2025-07-27 23:31:21,153 | INFO     | -- intersect: 184545401969.7042
[2025-07-27 19:31:54] 2025-07-27 23:31:21,153 | INFO     | intersect: 184545401969.7042
[2025-07-27 19:31:54] 2025-07-27 23:31:21,153 | INFO     | chi2: 0.14079114784843993
[2025-07-27 19:31:54] 2025-07-27 23:31:21,154 | INFO     | -- intersect: 184545401969.7042
[2025-07-27 19:31:54] 2025-07-27 23:31:21,154 | INFO     | current memory leak: -105.23 B/s (using 59 data points, chi2=0.14)
[2025-07-27 19:31:54] 2025-07-27 23:31:21,154 | INFO     | could have reported an average CPU frequency of 2864 MHz (6 samples)
[2025-07-27 19:31:54] 2025-07-27 23:31:21,154 | INFO     | ..............................
[2025-07-27 19:31:54] 2025-07-27 23:31:21,154 | INFO     | . Timing measurements:
[2025-07-27 19:31:54] 2025-07-27 23:31:21,154 | INFO     | . get job = 0 s
[2025-07-27 19:31:54] 2025-07-27 23:31:21,154 | INFO     | . initial setup = 2 s
[2025-07-27 19:31:54] 2025-07-27 23:31:21,154 | INFO     | . payload setup = 8 s
[2025-07-27 19:31:54] 2025-07-27 23:31:21,154 | INFO     | . stage-in = 0 s
[2025-07-27 19:31:54] 2025-07-27 23:31:21,154 | INFO     | . payload execution = 4006 s
[2025-07-27 19:31:54] 2025-07-27 23:31:21,154 | INFO     | . stage-out = 0 s
[2025-07-27 19:31:54] 2025-07-27 23:31:21,155 | INFO     | . log creation = 0 s
[2025-07-27 19:31:54] 2025-07-27 23:31:21,155 | INFO     | ..............................
[2025-07-27 19:31:54] 2025-07-27 23:31:21,227 | INFO     | 
[2025-07-27 19:31:54] 2025-07-27 23:31:21,227 | INFO     | job summary report
[2025-07-27 19:31:54] 2025-07-27 23:31:21,227 | INFO     | --------------------------------------------------
[2025-07-27 19:31:54] 2025-07-27 23:31:21,227 | INFO     | PanDA job id: 6747524977
[2025-07-27 19:31:54] 2025-07-27 23:31:21,227 | INFO     | task id: 45743349
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | errors: (none)
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | pilot state: finished 
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | transexitcode: 0
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | exeerrorcode: 0
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | exeerrordiag: 
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | exitcode: 0
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | exitmsg: OK
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | cpuconsumptiontime: 43050 s
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | nevents: 400
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | neventsw: 0
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | pid: 2189335
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | pgrp: 2189335
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | corecount: 12
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | event service: False
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | sizes: {0: 2397304, 1: 2397503, 6: 2397765, 11: 2397793, 4018: 2423580, 4019: 2432578, 4020: 2432762, 4024: 2432956}
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | --------------------------------------------------
[2025-07-27 19:31:54] 2025-07-27 23:31:21,228 | INFO     | 
[2025-07-27 19:31:54] 2025-07-27 23:31:21,229 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 19:31:54] 2025-07-27 23:31:21,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,249 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:31:54] 2025-07-27 23:31:21,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,249 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:31:54] 2025-07-27 23:31:21,249 | INFO     | job 6747524977 has completed (purged errors)
[2025-07-27 19:31:54] 2025-07-27 23:31:21,249 | INFO     | overall cleanup function is called
[2025-07-27 19:31:54] 2025-07-27 23:31:22,257 | INFO     | --- collectZombieJob: --- 10, [2189335]
[2025-07-27 19:31:54] 2025-07-27 23:31:22,257 | INFO     | zombie collector waiting for pid 2189335
[2025-07-27 19:31:54] 2025-07-27 23:31:22,258 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:31:54] 2025-07-27 23:31:22,258 | INFO     | collected zombie processes
[2025-07-27 19:31:54] 2025-07-27 23:31:22,258 | INFO     | will attempt to kill all subprocesses of pid=2189335
[2025-07-27 19:31:54] 2025-07-27 23:31:22,507 | INFO     | process IDs to be killed: [2189335] (in reverse order)
[2025-07-27 19:31:54] 2025-07-27 23:31:22,591 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:31:54] 2025-07-27 23:31:22,591 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:31:54] 2025-07-27 23:31:22,600 | INFO     | did not find any defunct processes belonging to 2189335
[2025-07-27 19:31:54] 2025-07-27 23:31:22,608 | INFO     | did not find any defunct processes belonging to 2189335
[2025-07-27 19:31:54] 2025-07-27 23:31:22,608 | INFO     | ready for new job
[2025-07-27 19:31:54] 2025-07-27 23:31:22,608 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:31:54] 2025-07-27 23:31:22,610 | INFO     | ***************************************
[2025-07-27 19:31:54] 2025-07-27 23:31:22,610 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:31:54] 2025-07-27 23:31:22,610 | INFO     | ***************************************
[2025-07-27 19:31:54] 2025-07-27 23:31:22,610 | INFO     | 
[2025-07-27 19:31:54] 2025-07-27 23:31:22,626 | INFO     | architecture information:
[2025-07-27 19:31:54] 2025-07-27 23:31:22,626 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:31:54] 2025-07-27 23:31:22,639 | INFO     | cat /etc/os-release:
[2025-07-27 19:31:54] NAME="CentOS Linux"
[2025-07-27 19:31:54] VERSION="7 (Core)"
[2025-07-27 19:31:54] ID="centos"
[2025-07-27 19:31:54] ID_LIKE="rhel fedora"
[2025-07-27 19:31:54] VERSION_ID="7"
[2025-07-27 19:31:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:31:54] ANSI_COLOR="0;31"
[2025-07-27 19:31:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:31:54] HOME_URL="https://www.centos.org/"
[2025-07-27 19:31:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:31:54] 
[2025-07-27 19:31:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:31:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:31:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:31:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:31:54] 
[2025-07-27 19:31:54] 2025-07-27 23:31:22,640 | INFO     | ***************************************
[2025-07-27 19:31:54] 2025-07-27 23:31:23,142 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 19:31:54] 2025-07-27 23:31:23,158 | INFO     | sufficient remaining disk space (76370935808 B)
[2025-07-27 19:31:54] 2025-07-27 23:31:23,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:31:54] 2025-07-27 23:31:23,159 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:31:54] 2025-07-27 23:31:23,160 | INFO     | update_server=False
[2025-07-27 19:31:54] 2025-07-27 23:31:23,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:31:54] 2025-07-27 23:31:23,160 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:31:54] 2025-07-27 23:31:23,161 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:31:54] 2025-07-27 23:31:23,212 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 19:31:54] 2025-07-27 23:31:23,212 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 19:31:54] 2025-07-27 23:31:23,213 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:31:54] 2025-07-27 23:31:23,213 | INFO     | will abort loop
[2025-07-27 19:31:54] 2025-07-27 23:31:23,349 | INFO     | all job control threads have been joined
[2025-07-27 19:31:54] 2025-07-27 23:31:23,433 | INFO     | all payload control threads have been joined
[2025-07-27 19:31:54] 2025-07-27 23:31:23,466 | INFO     | all data control threads have been joined
[2025-07-27 19:31:54] 2025-07-27 23:31:23,727 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:31:54] 2025-07-27 23:31:24,164 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:24,165 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:24,217 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:24,354 | INFO     | [job] control thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:24,438 | INFO     | [payload] control thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:24,471 | INFO     | [data] control thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:24,491 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:24,863 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:24,896 | INFO     | [job] validate thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:25,044 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:25,217 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:25,523 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:25,546 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:25,732 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:27,166 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:34,055 | INFO     | job.realtimelogging is not enabled
[2025-07-27 19:31:54] 2025-07-27 23:31:35,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:31:54] 2025-07-27 23:31:36,297 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140162422810432)>', '<ExcThread(monitor, started 140161484580608)>']
[2025-07-27 19:31:54] 2025-07-27 23:31:41,322 | INFO     | all workflow threads have been joined
[2025-07-27 19:31:54] 2025-07-27 23:31:41,322 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:31:54] 2025-07-27 23:31:41,323 | INFO     | traces error code: 0
[2025-07-27 19:31:54] 2025-07-27 23:31:41,323 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:31:54] 2025-07-27 23:31:53,728 | INFO     | PID=2180376 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:31:54] 2025-07-27 23:31:53,728 | INFO     | .. there are 9 such processes running
[2025-07-27 19:31:54] 2025-07-27 23:31:53,729 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:31:54] 2025-07-27 23:31:53,729 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:31:54] 2025-07-27 23:31:53,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:31:54] 2025-07-27 23:31:53,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:31:54] 2025-07-27 23:31:53,730 | INFO     | [monitor] control thread has ended
[2025-07-27 19:31:54] 2025-07-27 23:31:53,875 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:31:54] 2025-07-27 23:31:53,878 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:31:54] 2025-07-27 23:31:53,880 [wrapper] pilotpid: 2180376
[2025-07-27 19:31:54] 2025-07-27 23:31:53,883 [wrapper] Pilot exit status: 0
[2025-07-27 19:31:54] 2025-07-27 23:31:53,895 [wrapper] pandaids: 6747524977
[2025-07-27 19:31:54] 2025-07-27 23:31:53,973 [wrapper] cleanup supervisor_pilot 2340179 2180377
[2025-07-27 19:31:54] 2025-07-27 23:31:53,977 [wrapper] Test setup, not cleaning
[2025-07-27 19:31:54] 2025-07-27 23:31:53,980 [wrapper] apfmon messages muted
[2025-07-27 19:31:54] 2025-07-27 23:31:53,983 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:31:54] 2025-07-27 23:31:53,985 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:31:54]  *** Error codes and diagnostics ***
[2025-07-27 19:31:54]     "exeErrorCode": 0,
[2025-07-27 19:31:54]     "exeErrorDiag": "",
[2025-07-27 19:31:54]     "pilotErrorCode": 0,
[2025-07-27 19:31:54]     "pilotErrorDiag": "",
[2025-07-27 19:31:54]  *** Listing of results directory ***
[2025-07-27 19:31:54] total 428568
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 11:40 pilot3.tar.gz
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:46 queuedata.json
[2025-07-27 19:31:54] -rwx------. 1 boincer umatlas     36292 Jul 27 11:47 runpilot2-wrapper.sh
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas       100 Jul 27 18:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:31:54] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 18:23 run_atlas
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas       105 Jul 27 18:23 job.xml
[2025-07-27 19:31:54] -rw-r--r--. 2 boincer umatlas 232047861 Jul 27 18:23 EVNT.45743347._002833.pool.root.1
[2025-07-27 19:31:54] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:23 start_atlas.sh
[2025-07-27 19:31:54] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 18:23 shared
[2025-07-27 19:31:54] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 18:23 input.tar.gz
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas         0 Jul 27 18:23 boinc_lockfile
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 18:23 pandaJob.out
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas    980109 Jul 27 18:23 agis_schedconf.cvmfs.json
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:23 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:31:54] drwx------. 4 boincer umatlas      4096 Jul 27 18:24 pilot3
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 19:28 init_data.xml
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas 201385807 Jul 27 19:30 HITS.45743349._051890.pool.root.1
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:30 boinc_task_state.xml
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas      1035 Jul 27 19:31 memory_monitor_summary.json
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas    361426 Jul 27 19:31 log.45743349._051890.job.log.tgz.1
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas      7821 Jul 27 19:31 heartbeat.json
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:31 wrapper_checkpoint.txt
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:31 boinc_mmap_file
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas       822 Jul 27 19:31 pilotlog.txt
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas        95 Jul 27 19:31 pilot_heartbeat.json
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas    409911 Jul 27 19:31 log.45743349._051890.job.log.1
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas       357 Jul 27 19:31 output.list
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:31 runtime_log
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas    788480 Jul 27 19:31 result.tar.gz
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 19:31 runtime_log.err
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas       655 Jul 27 19:31 GmCNDmhlI07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDlVLDmIVFLRo.diag
[2025-07-27 19:31:54] -rw-r--r--. 1 boincer umatlas     21892 Jul 27 19:31 stderr.txt
[2025-07-27 19:31:54] HITS file was successfully produced:
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas 201385807 Jul 27 19:30 shared/HITS.pool.root.1
[2025-07-27 19:31:54]  *** Contents of shared directory: ***
[2025-07-27 19:31:54] total 424604
[2025-07-27 19:31:54] -rw-r--r--. 2 boincer umatlas 232047861 Jul 27 18:23 ATLAS.root_0
[2025-07-27 19:31:54] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:23 start_atlas.sh
[2025-07-27 19:31:54] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 18:23 input.tar.gz
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas 201385807 Jul 27 19:30 HITS.pool.root.1
[2025-07-27 19:31:54] -rw-------. 1 boincer umatlas    788480 Jul 27 19:31 result.tar.gz
19:31:55 (2176636): run_atlas exited; CPU time 43112.121612
19:31:55 (2176636): called boinc_finish(0)

</stderr_txt>
]]>

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