Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:15:35 (222326): wrapper (7.7.26015): starting
18:15:35 (222326): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 18:15:36] Arguments: --nthreads 12
[2025-07-27 18:15:36] Threads: 12
[2025-07-27 18:15:36] Checking for CVMFS
[2025-07-27 18:15:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:15:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:15:36] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:15:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:15:36] 2.12.6.0 418423 18952 319388 148827 3 11 25506786 32935937 7636 16776704 0 33815988 99.647 54765311 33157 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 18:15:36] CVMFS is ok
[2025-07-27 18:15:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:15:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:15:36] Further information can be found at the LHC@home message board.
[2025-07-27 18:15:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:15:36] Checking for apptainer binary...
[2025-07-27 18:15:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:15:36] Running /usr/bin/apptainer --version
[2025-07-27 18:15:36] apptainer version 1.4.1-1.el9
[2025-07-27 18:15:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:15:36] c6-1-26-2.aglt2.org
[2025-07-27 18:15:36] apptainer works
[2025-07-27 18:15:36] Set ATHENA_PROC_NUMBER=12
[2025-07-27 18:15:36] Set ATHENA_CORE_NUMBER=12
[2025-07-27 18:15:36] Starting ATLAS job with PandaID=6747500188
[2025-07-27 18:15:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:26:31]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:26:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 19:26:31]  replicas=None
[2025-07-27 19:26:31]  scope=mc23_13p6TeV
[2025-07-27 19:26:31]  status=None
[2025-07-27 19:26:31]  status_code=0
[2025-07-27 19:26:31]  storage_token=
[2025-07-27 19:26:31]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747500188/log.45743349._051560.job.log.tgz.1
[2025-07-27 19:26:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/de/log.45743349._051560.job.log.tgz.1
[2025-07-27 19:26:31]  workdir=None
[2025-07-27 19:26:31] ]
[2025-07-27 19:26:31] 2025-07-27 23:25:50,921 | INFO     | transferring file log.45743349._051560.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747500188/log.45743349._051560.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:26:31] 2025-07-27 23:25:50,921 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747500188/log.45743349._051560.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._051560.job
[2025-07-27 19:26:31] 2025-07-27 23:25:50,939 | INFO     | adding to output.list: log.45743349._051560.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/de/log.45743349._051560.job.log.tg
[2025-07-27 19:26:31] 2025-07-27 23:25:50,940 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:26:31] 2025-07-27 23:25:50,940 | INFO     | summary of transferred files:
[2025-07-27 19:26:31] 2025-07-27 23:25:50,940 | INFO     |  -- lfn=log.45743349._051560.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:26:31] 2025-07-27 23:25:50,940 | INFO     | stage-out finished correctly
[2025-07-27 19:26:31] 2025-07-27 23:25:51,752 | WARNING  | process 232863 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 19:26:31] 2025-07-27 23:25:51,753 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747500188/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:26:31] 2025-07-27 23:25:51,962 | INFO     | number of running child processes to parent process 232863: 1
[2025-07-27 19:26:31] 2025-07-27 23:25:51,962 | INFO     | maximum number of monitored processes: 6
[2025-07-27 19:26:31] 2025-07-27 23:25:53,233 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:26:31] 2025-07-27 23:25:53,780 | INFO     | job 6747500188 has state=finished
[2025-07-27 19:26:31] 2025-07-27 23:25:53,781 | INFO     | preparing for final server update for job 6747500188 in state='finished'
[2025-07-27 19:26:31] 2025-07-27 23:25:53,843 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 19:26:31] 2025-07-27 23:25:53,844 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:26:31] 2025-07-27 23:25:53,844 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:26:31] 2025-07-27 23:25:53,844 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:26:31] 2025-07-27 23:25:53,844 | INFO     | job 6747500188 has finished - writing final server update
[2025-07-27 19:26:31] 2025-07-27 23:25:53,844 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:26:31] 2025-07-27 23:25:53,845 | INFO     | executing command: lscpu
[2025-07-27 19:26:31] 2025-07-27 23:25:53,898 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:26:31] 2025-07-27 23:25:54,465 | INFO     | monitor loop #313: job 0:6747500188 is in state 'finished'
[2025-07-27 19:26:31] 2025-07-27 23:25:54,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:26:31] 2025-07-27 23:25:56,968 | INFO     | monitor loop #314: job 0:6747500188 is in state 'finished'
[2025-07-27 19:26:31] 2025-07-27 23:25:56,968 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:26:31] 2025-07-27 23:25:57,948 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 19:26:31] 2025-07-27 23:25:57,964 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2640.4063392857147
[2025-07-27 19:26:31] 2025-07-27 23:25:57,987 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747500188/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:26:31] 2025-07-27 23:25:57,988 | INFO     | extracted standard info from prmon json
[2025-07-27 19:26:31] 2025-07-27 23:25:57,988 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:26:31] 2025-07-27 23:25:57,988 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:26:31] 2025-07-27 23:25:57,988 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:26:31] 2025-07-27 23:25:57,989 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:26:31] 2025-07-27 23:25:57,990 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:26:31] 2025-07-27 23:25:57,991 | INFO     | sum of square deviations: 73882315.5
[2025-07-27 19:26:31] 2025-07-27 23:25:57,991 | INFO     | sum of deviations: -3169535142.4999995
[2025-07-27 19:26:31] 2025-07-27 23:25:57,991 | INFO     | mean x: 1753656741.5
[2025-07-27 19:26:31] 2025-07-27 23:25:57,991 | INFO     | mean y: 2727954.0483870967
[2025-07-27 19:26:31] 2025-07-27 23:25:57,991 | INFO     | -- intersect: 75234217823.4514
[2025-07-27 19:26:31] 2025-07-27 23:25:57,991 | INFO     | intersect: 75234217823.4514
[2025-07-27 19:26:31] 2025-07-27 23:25:57,991 | INFO     | chi2: 0.19318328614066715
[2025-07-27 19:26:31] 2025-07-27 23:25:57,992 | INFO     | -- intersect: 75234217823.4514
[2025-07-27 19:26:31] 2025-07-27 23:25:57,992 | INFO     | current memory leak: -42.90 B/s (using 62 data points, chi2=0.19)
[2025-07-27 19:26:31] 2025-07-27 23:25:57,992 | INFO     | could have reported an average CPU frequency of 2714 MHz (6 samples)
[2025-07-27 19:26:31] 2025-07-27 23:25:57,992 | INFO     | ..............................
[2025-07-27 19:26:31] 2025-07-27 23:25:57,992 | INFO     | . Timing measurements:
[2025-07-27 19:26:31] 2025-07-27 23:25:57,992 | INFO     | . get job = 0 s
[2025-07-27 19:26:31] 2025-07-27 23:25:57,992 | INFO     | . initial setup = 2 s
[2025-07-27 19:26:31] 2025-07-27 23:25:57,992 | INFO     | . payload setup = 7 s
[2025-07-27 19:26:31] 2025-07-27 23:25:57,993 | INFO     | . stage-in = 0 s
[2025-07-27 19:26:31] 2025-07-27 23:25:57,993 | INFO     | . payload execution = 4174 s
[2025-07-27 19:26:31] 2025-07-27 23:25:57,993 | INFO     | . stage-out = 0 s
[2025-07-27 19:26:31] 2025-07-27 23:25:57,993 | INFO     | . log creation = 0 s
[2025-07-27 19:26:31] 2025-07-27 23:25:57,993 | INFO     | ..............................
[2025-07-27 19:26:31] 2025-07-27 23:25:58,552 | INFO     | 
[2025-07-27 19:26:31] 2025-07-27 23:25:58,552 | INFO     | job summary report
[2025-07-27 19:26:31] 2025-07-27 23:25:58,552 | INFO     | --------------------------------------------------
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | PanDA job id: 6747500188
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | task id: 45743349
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | errors: (none)
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | pilot state: finished 
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | transexitcode: 0
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | exeerrorcode: 0
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | exeerrordiag: 
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | exitcode: 0
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | exitmsg: OK
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | cpuconsumptiontime: 44507 s
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | nevents: 400
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | neventsw: 0
[2025-07-27 19:26:31] 2025-07-27 23:25:58,553 | INFO     | pid: 232863
[2025-07-27 19:26:31] 2025-07-27 23:25:58,554 | INFO     | pgrp: 232863
[2025-07-27 19:26:31] 2025-07-27 23:25:58,554 | INFO     | corecount: 12
[2025-07-27 19:26:31] 2025-07-27 23:25:58,554 | INFO     | event service: False
[2025-07-27 19:26:31] 2025-07-27 23:25:58,554 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 4185: 2423636, 4186: 2423635, 4187: 2432689, 4189: 2432873, 4194: 2433067}
[2025-07-27 19:26:31] 2025-07-27 23:25:58,554 | INFO     | --------------------------------------------------
[2025-07-27 19:26:31] 2025-07-27 23:25:58,554 | INFO     | 
[2025-07-27 19:26:31] 2025-07-27 23:25:58,554 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 19:26:31] 2025-07-27 23:25:58,574 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,574 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,575 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,576 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,576 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:26:31] 2025-07-27 23:25:58,576 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,576 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:26:31] 2025-07-27 23:25:58,576 | INFO     | job 6747500188 has completed (purged errors)
[2025-07-27 19:26:31] 2025-07-27 23:25:58,576 | INFO     | overall cleanup function is called
[2025-07-27 19:26:31] 2025-07-27 23:25:59,584 | INFO     | --- collectZombieJob: --- 10, [232863]
[2025-07-27 19:26:31] 2025-07-27 23:25:59,585 | INFO     | zombie collector waiting for pid 232863
[2025-07-27 19:26:31] 2025-07-27 23:25:59,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:26:31] 2025-07-27 23:25:59,585 | INFO     | collected zombie processes
[2025-07-27 19:26:31] 2025-07-27 23:25:59,585 | INFO     | will attempt to kill all subprocesses of pid=232863
[2025-07-27 19:26:31] 2025-07-27 23:25:59,749 | INFO     | process IDs to be killed: [232863] (in reverse order)
[2025-07-27 19:26:31] 2025-07-27 23:25:59,841 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:26:31] 2025-07-27 23:25:59,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:26:31] 2025-07-27 23:25:59,849 | INFO     | did not find any defunct processes belonging to 232863
[2025-07-27 19:26:31] 2025-07-27 23:25:59,856 | INFO     | did not find any defunct processes belonging to 232863
[2025-07-27 19:26:31] 2025-07-27 23:25:59,856 | INFO     | ready for new job
[2025-07-27 19:26:31] 2025-07-27 23:25:59,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:26:31] 2025-07-27 23:25:59,857 | INFO     | ***************************************
[2025-07-27 19:26:31] 2025-07-27 23:25:59,857 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:26:31] 2025-07-27 23:25:59,857 | INFO     | ***************************************
[2025-07-27 19:26:31] 2025-07-27 23:25:59,858 | INFO     | 
[2025-07-27 19:26:31] 2025-07-27 23:25:59,875 | INFO     | architecture information:
[2025-07-27 19:26:31] 2025-07-27 23:25:59,875 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:26:31] 2025-07-27 23:25:59,889 | INFO     | cat /etc/os-release:
[2025-07-27 19:26:31] NAME="CentOS Linux"
[2025-07-27 19:26:31] VERSION="7 (Core)"
[2025-07-27 19:26:31] ID="centos"
[2025-07-27 19:26:31] ID_LIKE="rhel fedora"
[2025-07-27 19:26:31] VERSION_ID="7"
[2025-07-27 19:26:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:26:31] ANSI_COLOR="0;31"
[2025-07-27 19:26:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:26:31] HOME_URL="https://www.centos.org/"
[2025-07-27 19:26:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:26:31] 
[2025-07-27 19:26:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:26:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:26:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:26:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:26:31] 
[2025-07-27 19:26:31] 2025-07-27 23:25:59,890 | INFO     | ***************************************
[2025-07-27 19:26:31] 2025-07-27 23:26:00,392 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 19:26:31] 2025-07-27 23:26:00,408 | INFO     | sufficient remaining disk space (76284952576 B)
[2025-07-27 19:26:31] 2025-07-27 23:26:00,408 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:26:31] 2025-07-27 23:26:00,409 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:26:31] 2025-07-27 23:26:00,409 | INFO     | update_server=False
[2025-07-27 19:26:31] 2025-07-27 23:26:00,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:26:31] 2025-07-27 23:26:00,476 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:26:31] 2025-07-27 23:26:00,476 | INFO     | aborting loop
[2025-07-27 19:26:31] 2025-07-27 23:26:00,538 | INFO     | all data control threads have been joined
[2025-07-27 19:26:31] 2025-07-27 23:26:01,237 | INFO     | all payload control threads have been joined
[2025-07-27 19:26:31] 2025-07-27 23:26:01,414 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:01,479 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:01,481 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:01,514 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:26:31] 2025-07-27 23:26:01,543 | INFO     | [data] control thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:01,622 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:01,673 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:01,841 | INFO     | all job control threads have been joined
[2025-07-27 19:26:31] 2025-07-27 23:26:02,242 | INFO     | [payload] control thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:02,420 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:02,452 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:02,538 | INFO     | [job] validate thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:02,797 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:02,846 | INFO     | [job] control thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:03,098 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:26:31] 2025-07-27 23:26:03,519 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:03,821 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:26:31] 2025-07-27 23:26:04,104 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:07,827 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:10,952 | INFO     | job.realtimelogging is not enabled
[2025-07-27 19:26:31] 2025-07-27 23:26:11,957 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:26:31] 2025-07-27 23:26:12,499 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139983938545472)>', '<ExcThread(monitor, started 139983176328960)>']
[2025-07-27 19:26:31] 2025-07-27 23:26:17,524 | INFO     | all workflow threads have been joined
[2025-07-27 19:26:31] 2025-07-27 23:26:17,524 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:26:31] 2025-07-27 23:26:17,525 | INFO     | traces error code: 0
[2025-07-27 19:26:31] 2025-07-27 23:26:17,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:26:31] 2025-07-27 23:26:31,250 | INFO     | PID=225956 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 19:26:31] 2025-07-27 23:26:31,251 | INFO     | .. there are 14 such processes running
[2025-07-27 19:26:31] 2025-07-27 23:26:31,251 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:26:31] 2025-07-27 23:26:31,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:26:31] 2025-07-27 23:26:31,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:26:31] 2025-07-27 23:26:31,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:26:31] 2025-07-27 23:26:31,252 | INFO     | [monitor] control thread has ended
[2025-07-27 19:26:31] 2025-07-27 23:26:31,440 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:26:31] 2025-07-27 23:26:31,443 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:26:31] 2025-07-27 23:26:31,446 [wrapper] pilotpid: 225956
[2025-07-27 19:26:31] 2025-07-27 23:26:31,448 [wrapper] Pilot exit status: 0
[2025-07-27 19:26:31] 2025-07-27 23:26:31,461 [wrapper] pandaids: 6747500188
[2025-07-27 19:26:31] 2025-07-27 23:26:31,520 [wrapper] cleanup supervisor_pilot  361503 225957
[2025-07-27 19:26:31] 2025-07-27 23:26:31,523 [wrapper] Test setup, not cleaning
[2025-07-27 19:26:31] 2025-07-27 23:26:31,526 [wrapper] apfmon messages muted
[2025-07-27 19:26:31] 2025-07-27 23:26:31,529 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:26:31] 2025-07-27 23:26:31,531 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:26:31]  *** Error codes and diagnostics ***
[2025-07-27 19:26:31]     "exeErrorCode": 0,
[2025-07-27 19:26:31]     "exeErrorDiag": "",
[2025-07-27 19:26:31]     "pilotErrorCode": 0,
[2025-07-27 19:26:31]     "pilotErrorDiag": "",
[2025-07-27 19:26:31]  *** Listing of results directory ***
[2025-07-27 19:26:31] total 429432
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:29 queuedata.json
[2025-07-27 19:26:31] -rwx------. 1 boincer umatlas     36292 Jul 27 11:31 runpilot2-wrapper.sh
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas       100 Jul 27 18:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:26:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 18:15 run_atlas
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas       105 Jul 27 18:15 job.xml
[2025-07-27 19:26:31] -rw-r--r--. 2 boincer umatlas 229158223 Jul 27 18:15 EVNT.45743347._002759.pool.root.1
[2025-07-27 19:26:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:15 start_atlas.sh
[2025-07-27 19:26:31] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 18:15 shared
[2025-07-27 19:26:31] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 18:15 input.tar.gz
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas         0 Jul 27 18:15 boinc_lockfile
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 18:15 pandaJob.out
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas    980109 Jul 27 18:15 agis_schedconf.cvmfs.json
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:15 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:26:31] drwx------. 4 boincer umatlas      4096 Jul 27 18:15 pilot3
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas      6843 Jul 27 19:21 init_data.xml
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas 205143929 Jul 27 19:25 HITS.45743349._051560.pool.root.1
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:25 boinc_task_state.xml
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas      1034 Jul 27 19:25 memory_monitor_summary.json
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas    361258 Jul 27 19:25 log.45743349._051560.job.log.tgz.1
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas      7823 Jul 27 19:25 heartbeat.json
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:26 boinc_mmap_file
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:26 wrapper_checkpoint.txt
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas       822 Jul 27 19:26 pilotlog.txt
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas        95 Jul 27 19:26 pilot_heartbeat.json
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas    423112 Jul 27 19:26 log.45743349._051560.job.log.1
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas       357 Jul 27 19:26 output.list
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:26 runtime_log
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas    798720 Jul 27 19:26 result.tar.gz
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 19:26 runtime_log.err
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas       655 Jul 27 19:26 CjoKDmfWI07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZgVLDmqXG7Jm.diag
[2025-07-27 19:26:31] -rw-r--r--. 1 boincer umatlas     21913 Jul 27 19:26 stderr.txt
[2025-07-27 19:26:31] HITS file was successfully produced:
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas 205143929 Jul 27 19:25 shared/HITS.pool.root.1
[2025-07-27 19:26:31]  *** Contents of shared directory: ***
[2025-07-27 19:26:31] total 425456
[2025-07-27 19:26:31] -rw-r--r--. 2 boincer umatlas 229158223 Jul 27 18:15 ATLAS.root_0
[2025-07-27 19:26:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:15 start_atlas.sh
[2025-07-27 19:26:31] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 18:15 input.tar.gz
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas 205143929 Jul 27 19:25 HITS.pool.root.1
[2025-07-27 19:26:31] -rw-------. 1 boincer umatlas    798720 Jul 27 19:26 result.tar.gz
19:26:33 (222326): run_atlas exited; CPU time 44590.520406
19:26:33 (222326): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN