Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-27 23:50:00 (3042028): Detected: vboxwrapper 26206
2025-07-27 23:50:00 (3042028): Detected: BOINC client v7.24.1
2025-07-27 23:50:00 (3042028): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-07-27 23:50:00 (3042028): Successfully copied 'init_data.xml' to the shared directory.
2025-07-27 23:50:01 (3042028): Create VM. (boinc_a7ada17fa1bc1e83, slot#1)
2025-07-27 23:50:01 (3042028): Setting Memory Size for VM. (4600MB)
2025-07-27 23:50:01 (3042028): Setting CPU Count for VM. (6)
2025-07-27 23:50:01 (3042028): Setting Chipset Options for VM.
2025-07-27 23:50:01 (3042028): Setting Graphics Controller Options for VM.
2025-07-27 23:50:01 (3042028): Setting Boot Options for VM.
2025-07-27 23:50:01 (3042028): Setting Network Configuration for NAT.
2025-07-27 23:50:01 (3042028): Enabling VM Network Access.
2025-07-27 23:50:01 (3042028): Disabling USB Support for VM.
2025-07-27 23:50:01 (3042028): Disabling COM Port Support for VM.
2025-07-27 23:50:01 (3042028): Disabling LPT Port Support for VM.
2025-07-27 23:50:01 (3042028): Disabling Audio Support for VM.
2025-07-27 23:50:02 (3042028): Disabling Clipboard Support for VM.
2025-07-27 23:50:02 (3042028): Disabling Drag and Drop Support for VM.
2025-07-27 23:50:02 (3042028): Adding storage controller(s) to VM.
2025-07-27 23:50:02 (3042028): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-27 23:50:03 (3042028): Adding VirtualBox Guest Additions to VM.
2025-07-27 23:50:03 (3042028): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-27 23:50:03 (3042028): forwarding host port 35707 to guest port 80
2025-07-27 23:50:03 (3042028): Enabling remote desktop for VM.
2025-07-27 23:50:03 (3042028): Required extension pack not installed, remote desktop not enabled.
2025-07-27 23:50:03 (3042028): Enabling shared directory for VM.
2025-07-27 23:50:04 (3042028): Starting VM using VBoxManage interface. (boinc_a7ada17fa1bc1e83, slot#1)
2025-07-27 23:50:05 (3042028): Successfully started VM. (PID = '3043038')
2025-07-27 23:50:05 (3042028): Reporting VM Process ID to BOINC.
2025-07-27 23:50:05 (3042028): Guest Log: BIOS: VirtualBox 7.0.16
2025-07-27 23:50:05 (3042028): Guest Log: CPUID EDX: 0x178bfbff
2025-07-27 23:50:05 (3042028): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-27 23:50:05 (3042028): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-27 23:50:05 (3042028): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-27 23:50:05 (3042028): Detected: Web Application Enabled (http://localhost:35707)
2025-07-27 23:50:05 (3042028): Preference change detected
2025-07-27 23:50:05 (3042028): Setting CPU throttle for VM. (20%)
2025-07-27 23:50:05 (3042028): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-27 23:50:07 (3042028): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-27 23:50:07 (3042028): Guest Log: BIOS: Booting from Hard Disk...
2025-07-27 23:50:12 (3042028): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-27 23:50:12 (3042028): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-27 23:50:12 (3042028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-27 23:51:19 (3042028): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-27 23:51:19 (3042028): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-27 23:51:33 (3042028): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-27 23:51:33 (3042028): Guest Log: 00:00:00.000184 main     Log opened 2025-07-28T06:51:34.682606000Z
2025-07-27 23:51:33 (3042028): Guest Log: 00:00:00.000273 main     OS Product: Linux
2025-07-27 23:51:33 (3042028): Guest Log: 00:00:00.000284 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-27 23:51:33 (3042028): Guest Log: 00:00:00.000294 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-27 23:51:33 (3042028): Guest Log: 00:00:00.000303 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-27 23:51:33 (3042028): Guest Log: 00:00:00.000303 main     Process ID: 1336
2025-07-27 23:51:33 (3042028): Guest Log: 00:00:00.000303 main     Package type: LINUX_64BITS_GENERIC
2025-07-27 23:51:33 (3042028): Guest Log: 00:00:00.000843 main     5.2.32 r132073 started. Verbose level = 0
2025-07-27 23:51:33 (3042028): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-27 23:51:33 (3042028): Guest Log: [INFO] Mounting shared directory
2025-07-27 23:51:33 (3042028): Guest Log: [INFO] Checking for init_data.xml
2025-07-27 23:51:37 (3042028): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-27 23:51:37 (3042028): Guest Log: [INFO] Detected branch: prod
2025-07-27 23:51:37 (3042028): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-27 23:51:37 (3042028): Guest Log: Copying input files
2025-07-27 23:51:40 (3042028): Guest Log: Copied input files into RunAtlas.
2025-07-27 23:51:40 (3042028): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-27 23:51:40 (3042028): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-27 23:51:40 (3042028): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-27 23:51:40 (3042028): Guest Log: Further information can be found at the LHC@home message board.
2025-07-27 23:51:48 (3042028): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-27 23:51:48 (3042028): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-27 23:51:48 (3042028): Guest Log: 2.6.3.0 1611 0 30180 148839 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-27 23:51:49 (3042028): Guest Log: copied the webapp to /var/www
2025-07-27 23:51:49 (3042028): Guest Log: ATHENA_PROC_NUMBER=6
2025-07-27 23:51:49 (3042028): Guest Log: ATHENA_CORE_NUMBER=6
2025-07-27 23:51:49 (3042028): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-27 23:51:49 (3042028): Guest Log:  *** Starting ATLAS job. (PandaID=6747500161 taskID=45743349) ***
2025-07-28 01:03:35 (3042028): VM state change detected. (old = 'running', new = 'paused')
2025-07-28 04:32:26 (3042028): VM state change detected. (old = 'paused', new = 'running')
2025-07-28 04:32:30 (3042028): Guest Log: 01:15:23.928575 timesync vgsvcTimeSyncWorker: Radical host time change: 12 546 096 000 000ns (HostNow=1 753 702 347 169 000 000 ns HostLast=1 753 689 801 073 000 000 ns)
2025-07-28 04:32:40 (3042028): Guest Log: 01:15:33.968735 timesync vgsvcTimeSyncWorker: Radical guest time change: 12 339 245 757 000ns (GuestNow=1 753 702 357 532 773 000 ns GuestLast=1 753 690 018 287 016 000 ns fSetTimeLastLoop=true )
2025-07-28 04:57:56 (3042028): Status Report: Elapsed Time: '6000.000000'
2025-07-28 04:57:56 (3042028): Status Report: CPU Time: '6106.180000'
2025-07-28 06:36:56 (3042028): Status Report: Elapsed Time: '12000.000000'
2025-07-28 06:36:56 (3042028): Status Report: CPU Time: '12952.510000'
2025-07-28 07:17:57 (3042028): Guest Log:  *** Job finished ***
2025-07-28 07:17:57 (3042028): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:03,118 | INFO     | end of generic workflow (traces error code: 0)
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:03,118 | INFO     | traces error code: 0
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:03,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:21,682 | INFO     | PID=5942 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:21,773 | INFO     | found 0 job(s) in 20 queues
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:21,773 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:21,773 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:21,773 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:21,773 | CRITICAL | thread 'MainThread' is not alive
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:21,773 | INFO     | [monitor] control thread has ended
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:22,020 [wrapper] ==== pilot stdout END ====
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:22,023 [wrapper] ==== wrapper stdout RESUME ====
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:22,026 [wrapper] pilotpid: 5942
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:22,029 [wrapper] Pilot exit status: 0
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:22,114 [wrapper] pandaids: 6747500161
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:22,137 [wrapper] cleanup supervisor_pilot 10788 5943
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:22,140 [wrapper] Test setup, not cleaning
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:22,143 [wrapper] apfmon messages muted
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:22,146 [wrapper] ==== wrapper stdout END ====
2025-07-28 07:17:57 (3042028): Guest Log: 2025-07-28 14:25:22,149 [wrapper] ==== wrapper stderr END ====
2025-07-28 07:17:57 (3042028): Guest Log:  *** Error codes and diagnostics ***
2025-07-28 07:17:57 (3042028): Guest Log:     "exeErrorCode": 0,
2025-07-28 07:17:57 (3042028): Guest Log:     "exeErrorDiag": "",
2025-07-28 07:17:57 (3042028): Guest Log:     "pilotErrorCode": 0,
2025-07-28 07:17:57 (3042028): Guest Log:     "pilotErrorDiag": "",
2025-07-28 07:17:57 (3042028): Guest Log:  *** Listing of results directory ***
2025-07-28 07:17:57 (3042028): Guest Log: total 208960
2025-07-28 07:17:57 (3042028): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 27 14:53 pilot3.tar.gz
2025-07-28 07:17:57 (3042028): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 27 15:29 queuedata.json
2025-07-28 07:17:57 (3042028): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 27 15:31 runpilot2-wrapper.sh
2025-07-28 07:17:57 (3042028): Guest Log: -rw-r--r--. 1 atlas atlas    542899 Jul 28 06:51 input.tar.gz
2025-07-28 07:17:57 (3042028): Guest Log: -rw-r--r--. 1 atlas atlas     15095 Jul 28 06:51 start_atlas.sh
2025-07-28 07:17:57 (3042028): Guest Log: -rw-r--r--. 1 atlas atlas      9704 Jul 28 06:51 init_data.xml
2025-07-28 07:17:57 (3042028): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 28 06:51 EVNT.45743347._002758.pool.root.1 -> /data/./ATLAS.root_0
2025-07-28 07:17:57 (3042028): Guest Log: -rw-r--r--. 1 atlas atlas      2563 Jul 28 06:51 pandaJob.out
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas    978460 Jul 28 06:52 agis_schedconf.cvmfs.json
2025-07-28 07:17:57 (3042028): Guest Log: drwx------. 4 atlas atlas      4096 Jul 28 06:52 pilot3
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas 208080486 Jul 28 14:23 HITS.45743349._051533.pool.root.1
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas      1029 Jul 28 14:24 memory_monitor_summary.json
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas   1589827 Jul 28 14:24 agis_ddmendpoints.agis.ALL.json
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas    316477 Jul 28 14:24 log.45743349._051533.job.log.tgz.1
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas      7788 Jul 28 14:24 heartbeat.json
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas       814 Jul 28 14:25 pilotlog.txt
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas        98 Jul 28 14:25 pilot_heartbeat.json
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas    731707 Jul 28 14:25 log.45743349._051533.job.log.1
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas       357 Jul 28 14:25 output.list
2025-07-28 07:17:57 (3042028): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 28 14:25 runtime_log
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas   1064960 Jul 28 14:25 result.tar.gz
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas       669 Jul 28 14:25 yRKKDmfWI07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9fVLDmJBbztn.diag
2025-07-28 07:17:57 (3042028): Guest Log: -rw-r--r--. 1 atlas atlas      8633 Jul 28 14:25 runtime_log.err
2025-07-28 07:17:57 (3042028): Guest Log: Looking for outputfile HITS.45743349._051533.pool.root.1
2025-07-28 07:17:57 (3042028): Guest Log: HITS file was successfully produced
2025-07-28 07:17:57 (3042028): Guest Log: -rw-------. 1 atlas atlas 208080486 Jul 28 14:23 /home/atlas/RunAtlas/HITS.45743349._051533.pool.root.1
2025-07-28 07:17:58 (3042028): Guest Log: Successfully finished the ATLAS job!
2025-07-28 07:17:58 (3042028): Guest Log: Copying the results back to the shared directory!
2025-07-28 07:17:58 (3042028): Guest Log:  *** Contents of shared directory: ***
2025-07-28 07:17:58 (3042028): Guest Log: total 227332
2025-07-28 07:17:58 (3042028): Guest Log: -rw-r--r--. 1 root root 231143842 Jul 28 06:50 ATLAS.root_0
2025-07-28 07:17:58 (3042028): Guest Log: -rw-r--r--. 1 root root      9704 Jul 28 06:50 init_data.xml
2025-07-28 07:17:58 (3042028): Guest Log: -rw-r--r--. 1 root root    542899 Jul 28 06:50 input.tar.gz
2025-07-28 07:17:58 (3042028): Guest Log: -rw-r--r--. 1 root root   1064960 Jul 28 14:17 result.tar.gz
2025-07-28 07:17:58 (3042028): Guest Log: -rw-r--r--. 1 root root     15095 Jul 28 06:50 start_atlas.sh
2025-07-28 07:17:58 (3042028): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-28 07:17:58 (3042028): VM Completion File Detected.
2025-07-28 07:17:58 (3042028): Powering off VM.
2025-07-28 07:17:58 (3042028): Successfully stopped VM.
2025-07-28 07:17:58 (3042028): Deregistering VM. (boinc_a7ada17fa1bc1e83, slot#1)
2025-07-28 07:17:58 (3042028): Removing network bandwidth throttle group from VM.
2025-07-28 07:17:58 (3042028): Removing VM from VirtualBox.
07:18:03 (3042028): called boinc_finish(0)

</stderr_txt>
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