Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:53:40 (16666): wrapper (7.7.26015): starting
16:53:40 (16666): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:53:40] Arguments: --nthreads 12
[2025-07-27 16:53:40] Threads: 12
[2025-07-27 16:53:40] Checking for CVMFS
[2025-07-27 16:53:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:53:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:53:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:53:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:53:40] 2.11.2.0 2947 112461 94084 148823 2 59 14566603 20275200 1 130560 0 38520708 99.971 9787524 9662 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 16:53:40] CVMFS is ok
[2025-07-27 16:53:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:53:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:53:40] Further information can be found at the LHC@home message board.
[2025-07-27 16:53:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:53:40] Checking for apptainer binary...
[2025-07-27 16:53:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:53:40] Running /usr/bin/apptainer --version
[2025-07-27 16:53:40] apptainer version 1.3.2-1.el7
[2025-07-27 16:53:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:53:42] c-205-18.aglt2.org
[2025-07-27 16:53:42] apptainer works
[2025-07-27 16:53:42] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:53:42] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:53:42] Starting ATLAS job with PandaID=6744938127
[2025-07-27 16:53:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:14:44]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:14:44]  protocol_id=None
[2025-07-27 18:14:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:14:44]  replicas=None
[2025-07-27 18:14:44]  scope=mc23_13p6TeV
[2025-07-27 18:14:44]  status=None
[2025-07-27 18:14:44]  status_code=0
[2025-07-27 18:14:44]  storage_token=
[2025-07-27 18:14:44]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744938127/log.45743349._011974.job.log.tgz.1
[2025-07-27 18:14:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/6d/log.45743349._011974.job.log.tgz.1
[2025-07-27 18:14:44]  workdir=None
[2025-07-27 18:14:44] ]
[2025-07-27 18:14:44] 2025-07-27 22:14:02,784 | INFO     | transferring file log.45743349._011974.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744938127/log.45743349._011974.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 18:14:44] 2025-07-27 22:14:02,785 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744938127/log.45743349._011974.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._011974.job
[2025-07-27 18:14:44] 2025-07-27 22:14:02,808 | INFO     | adding to output.list: log.45743349._011974.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/6d/log.45743349._011974.job.log.tg
[2025-07-27 18:14:44] 2025-07-27 22:14:02,809 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:14:44] 2025-07-27 22:14:02,809 | INFO     | summary of transferred files:
[2025-07-27 18:14:44] 2025-07-27 22:14:02,809 | INFO     |  -- lfn=log.45743349._011974.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:14:44] 2025-07-27 22:14:02,809 | INFO     | stage-out finished correctly
[2025-07-27 18:14:44] 2025-07-27 22:14:04,533 | INFO     | monitor loop #358: job 0:6744938127 is in state 'finished'
[2025-07-27 18:14:44] 2025-07-27 22:14:04,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:14:44] 2025-07-27 22:14:05,620 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:14:44] 2025-07-27 22:14:07,010 | INFO     | job 6744938127 has state=finished
[2025-07-27 18:14:44] 2025-07-27 22:14:07,019 | INFO     | preparing for final server update for job 6744938127 in state='finished'
[2025-07-27 18:14:44] 2025-07-27 22:14:07,020 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:14:44] 2025-07-27 22:14:07,020 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:14:44] 2025-07-27 22:14:07,020 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:14:44] 2025-07-27 22:14:07,020 | INFO     | job 6744938127 has finished - writing final server update
[2025-07-27 18:14:44] 2025-07-27 22:14:07,021 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:14:44] 2025-07-27 22:14:07,021 | INFO     | executing command: lscpu
[2025-07-27 18:14:44] 2025-07-27 22:14:07,036 | INFO     | monitor loop #359: job 0:6744938127 is in state 'finished'
[2025-07-27 18:14:44] 2025-07-27 22:14:07,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:14:44] 2025-07-27 22:14:07,046 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:14:44] 2025-07-27 22:14:09,539 | INFO     | monitor loop #360: job 0:6744938127 is in state 'finished'
[2025-07-27 18:14:44] 2025-07-27 22:14:09,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:14:44] 2025-07-27 22:14:10,304 | INFO     | PID=20261 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 18:14:44] 2025-07-27 22:14:12,042 | INFO     | monitor loop #361: job 0:6744938127 is in state 'finished'
[2025-07-27 18:14:44] 2025-07-27 22:14:12,052 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:14:44] 2025-07-27 22:14:12,105 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 18:14:44] 2025-07-27 22:14:12,108 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-27 18:14:44] 2025-07-27 22:14:12,111 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744938127/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:14:44] 2025-07-27 22:14:12,111 | INFO     | extracted standard info from prmon json
[2025-07-27 18:14:44] 2025-07-27 22:14:12,111 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:14:44] 2025-07-27 22:14:12,112 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:14:44] 2025-07-27 22:14:12,112 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:14:44] 2025-07-27 22:14:12,112 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:14:44] 2025-07-27 22:14:12,114 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:14:44] 2025-07-27 22:14:12,114 | INFO     | sum of square deviations: 115715658.0
[2025-07-27 18:14:44] 2025-07-27 22:14:12,115 | INFO     | sum of deviations: -6418091484.500002
[2025-07-27 18:14:44] 2025-07-27 22:14:12,115 | INFO     | mean x: 1753652136.5
[2025-07-27 18:14:44] 2025-07-27 22:14:12,115 | INFO     | mean y: 2739752.1805555555
[2025-07-27 18:14:44] 2025-07-27 22:14:12,115 | INFO     | -- intersect: 97267881208.19583
[2025-07-27 18:14:44] 2025-07-27 22:14:12,115 | INFO     | intersect: 97267881208.19583
[2025-07-27 18:14:44] 2025-07-27 22:14:12,116 | INFO     | chi2: 0.06119054429568126
[2025-07-27 18:14:44] 2025-07-27 22:14:12,116 | INFO     | -- intersect: 97267881208.19583
[2025-07-27 18:14:44] 2025-07-27 22:14:12,116 | INFO     | current memory leak: -55.46 B/s (using 72 data points, chi2=0.06)
[2025-07-27 18:14:44] 2025-07-27 22:14:12,116 | INFO     | could have reported an average CPU frequency of 2036 MHz (6 samples)
[2025-07-27 18:14:44] 2025-07-27 22:14:12,116 | INFO     | ..............................
[2025-07-27 18:14:44] 2025-07-27 22:14:12,117 | INFO     | . Timing measurements:
[2025-07-27 18:14:44] 2025-07-27 22:14:12,117 | INFO     | . get job = 0 s
[2025-07-27 18:14:44] 2025-07-27 22:14:12,117 | INFO     | . initial setup = 2 s
[2025-07-27 18:14:44] 2025-07-27 22:14:12,117 | INFO     | . payload setup = 9 s
[2025-07-27 18:14:44] 2025-07-27 22:14:12,117 | INFO     | . stage-in = 0 s
[2025-07-27 18:14:44] 2025-07-27 22:14:12,117 | INFO     | . payload execution = 4776 s
[2025-07-27 18:14:44] 2025-07-27 22:14:12,117 | INFO     | . stage-out = 0 s
[2025-07-27 18:14:44] 2025-07-27 22:14:12,117 | INFO     | . log creation = 0 s
[2025-07-27 18:14:44] 2025-07-27 22:14:12,118 | INFO     | ..............................
[2025-07-27 18:14:44] 2025-07-27 22:14:12,251 | INFO     | 
[2025-07-27 18:14:44] 2025-07-27 22:14:12,251 | INFO     | job summary report
[2025-07-27 18:14:44] 2025-07-27 22:14:12,251 | INFO     | --------------------------------------------------
[2025-07-27 18:14:44] 2025-07-27 22:14:12,251 | INFO     | PanDA job id: 6744938127
[2025-07-27 18:14:44] 2025-07-27 22:14:12,251 | INFO     | task id: 45743349
[2025-07-27 18:14:44] 2025-07-27 22:14:12,252 | INFO     | errors: (none)
[2025-07-27 18:14:44] 2025-07-27 22:14:12,252 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:14:44] 2025-07-27 22:14:12,252 | INFO     | pilot state: finished 
[2025-07-27 18:14:44] 2025-07-27 22:14:12,252 | INFO     | transexitcode: 0
[2025-07-27 18:14:44] 2025-07-27 22:14:12,252 | INFO     | exeerrorcode: 0
[2025-07-27 18:14:44] 2025-07-27 22:14:12,252 | INFO     | exeerrordiag: 
[2025-07-27 18:14:44] 2025-07-27 22:14:12,252 | INFO     | exitcode: 0
[2025-07-27 18:14:44] 2025-07-27 22:14:12,253 | INFO     | exitmsg: OK
[2025-07-27 18:14:44] 2025-07-27 22:14:12,253 | INFO     | cpuconsumptiontime: 52225 s
[2025-07-27 18:14:44] 2025-07-27 22:14:12,253 | INFO     | nevents: 400
[2025-07-27 18:14:44] 2025-07-27 22:14:12,253 | INFO     | neventsw: 0
[2025-07-27 18:14:44] 2025-07-27 22:14:12,253 | INFO     | pid: 26732
[2025-07-27 18:14:44] 2025-07-27 22:14:12,253 | INFO     | pgrp: 26732
[2025-07-27 18:14:44] 2025-07-27 22:14:12,254 | INFO     | corecount: 12
[2025-07-27 18:14:44] 2025-07-27 22:14:12,254 | INFO     | event service: False
[2025-07-27 18:14:44] 2025-07-27 22:14:12,254 | INFO     | sizes: {0: 2397473, 5: 2397735, 11: 2397791, 4789: 2424045, 4790: 2424044, 4791: 2433098, 4794: 2433282, 4800: 2433476}
[2025-07-27 18:14:44] 2025-07-27 22:14:12,254 | INFO     | --------------------------------------------------
[2025-07-27 18:14:44] 2025-07-27 22:14:12,254 | INFO     | 
[2025-07-27 18:14:44] 2025-07-27 22:14:12,254 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 18:14:44] 2025-07-27 22:14:12,279 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,280 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,280 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,280 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,280 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,281 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,281 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,281 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,281 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,281 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,281 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,282 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,282 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,282 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,282 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,283 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:14:44] 2025-07-27 22:14:12,283 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,283 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:14:44] 2025-07-27 22:14:12,283 | INFO     | job 6744938127 has completed (purged errors)
[2025-07-27 18:14:44] 2025-07-27 22:14:12,283 | INFO     | overall cleanup function is called
[2025-07-27 18:14:44] 2025-07-27 22:14:13,292 | INFO     | --- collectZombieJob: --- 10, [26732]
[2025-07-27 18:14:44] 2025-07-27 22:14:13,292 | INFO     | zombie collector waiting for pid 26732
[2025-07-27 18:14:44] 2025-07-27 22:14:13,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:14:44] 2025-07-27 22:14:13,293 | INFO     | collected zombie processes
[2025-07-27 18:14:44] 2025-07-27 22:14:13,293 | INFO     | will attempt to kill all subprocesses of pid=26732
[2025-07-27 18:14:44] 2025-07-27 22:14:13,384 | INFO     | process IDs to be killed: [26732] (in reverse order)
[2025-07-27 18:14:44] 2025-07-27 22:14:13,435 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:14:44] 2025-07-27 22:14:13,435 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:14:44] 2025-07-27 22:14:13,439 | INFO     | did not find any defunct processes belonging to 26732
[2025-07-27 18:14:44] 2025-07-27 22:14:13,441 | INFO     | did not find any defunct processes belonging to 26732
[2025-07-27 18:14:44] 2025-07-27 22:14:13,441 | INFO     | ready for new job
[2025-07-27 18:14:44] 2025-07-27 22:14:13,441 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:14:44] 2025-07-27 22:14:13,442 | INFO     | ***************************************
[2025-07-27 18:14:44] 2025-07-27 22:14:13,442 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:14:44] 2025-07-27 22:14:13,443 | INFO     | ***************************************
[2025-07-27 18:14:44] 2025-07-27 22:14:13,443 | INFO     | 
[2025-07-27 18:14:44] 2025-07-27 22:14:13,443 | INFO     | architecture information:
[2025-07-27 18:14:44] 2025-07-27 22:14:13,444 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:14:44] 2025-07-27 22:14:13,461 | INFO     | cat /etc/os-release:
[2025-07-27 18:14:44] NAME="CentOS Linux"
[2025-07-27 18:14:44] VERSION="7 (Core)"
[2025-07-27 18:14:44] ID="centos"
[2025-07-27 18:14:44] ID_LIKE="rhel fedora"
[2025-07-27 18:14:44] VERSION_ID="7"
[2025-07-27 18:14:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:14:44] ANSI_COLOR="0;31"
[2025-07-27 18:14:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:14:44] HOME_URL="https://www.centos.org/"
[2025-07-27 18:14:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:14:44] 
[2025-07-27 18:14:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:14:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:14:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:14:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:14:44] 
[2025-07-27 18:14:44] 2025-07-27 22:14:13,461 | INFO     | ***************************************
[2025-07-27 18:14:44] 2025-07-27 22:14:13,964 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 18:14:44] 2025-07-27 22:14:13,983 | INFO     | sufficient remaining disk space (29350690816 B)
[2025-07-27 18:14:44] 2025-07-27 22:14:13,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:14:44] 2025-07-27 22:14:13,983 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:14:44] 2025-07-27 22:14:13,983 | INFO     | update_server=False
[2025-07-27 18:14:44] 2025-07-27 22:14:13,983 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:14:44] 2025-07-27 22:14:13,984 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:14:44] 2025-07-27 22:14:13,984 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:14:44] 2025-07-27 22:14:13,984 | INFO     | aborting loop
[2025-07-27 18:14:44] 2025-07-27 22:14:13,985 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:14:44] 2025-07-27 22:14:14,615 | INFO     | all data control threads have been joined
[2025-07-27 18:14:44] 2025-07-27 22:14:14,912 | INFO     | all job control threads have been joined
[2025-07-27 18:14:44] 2025-07-27 22:14:14,986 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:14,989 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:14,990 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:15,118 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:15,127 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:15,231 | INFO     | all payload control threads have been joined
[2025-07-27 18:14:44] 2025-07-27 22:14:15,487 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:15,533 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:15,620 | INFO     | [data] control thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:15,789 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:15,917 | INFO     | [job] control thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:15,990 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:16,211 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:14:44] 2025-07-27 22:14:16,236 | INFO     | [payload] control thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:16,451 | INFO     | [job] validate thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:16,550 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:20,217 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:24,172 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:14:44] 2025-07-27 22:14:25,178 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:14:44] 2025-07-27 22:14:26,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140191015688000)>', '<ExcThread(monitor, started 140190207174400)>']
[2025-07-27 18:14:44] 2025-07-27 22:14:31,396 | INFO     | all workflow threads have been joined
[2025-07-27 18:14:44] 2025-07-27 22:14:31,396 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:14:44] 2025-07-27 22:14:31,404 | INFO     | traces error code: 0
[2025-07-27 18:14:44] 2025-07-27 22:14:31,404 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:14:44] 2025-07-27 22:14:44,506 | INFO     | PID=20261 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 18:14:44] 2025-07-27 22:14:44,506 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:14:44] 2025-07-27 22:14:44,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:14:44] 2025-07-27 22:14:44,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:14:44] 2025-07-27 22:14:44,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:14:44] 2025-07-27 22:14:44,507 | INFO     | [monitor] control thread has ended
[2025-07-27 18:14:44] 2025-07-27 22:14:44,586 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:14:44] 2025-07-27 22:14:44,590 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:14:44] 2025-07-27 22:14:44,594 [wrapper] pilotpid: 20261
[2025-07-27 18:14:44] 2025-07-27 22:14:44,598 [wrapper] Pilot exit status: 0
[2025-07-27 18:14:44] 2025-07-27 22:14:44,614 [wrapper] pandaids: 6744938127
[2025-07-27 18:14:44] 2025-07-27 22:14:44,654 [wrapper] cleanup supervisor_pilot 12713 20262
[2025-07-27 18:14:44] 2025-07-27 22:14:44,658 [wrapper] Test setup, not cleaning
[2025-07-27 18:14:44] 2025-07-27 22:14:44,662 [wrapper] apfmon messages muted
[2025-07-27 18:14:44] 2025-07-27 22:14:44,666 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:14:44] 2025-07-27 22:14:44,670 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:14:44]  *** Error codes and diagnostics ***
[2025-07-27 18:14:44]     "exeErrorCode": 0,
[2025-07-27 18:14:44]     "exeErrorDiag": "",
[2025-07-27 18:14:44]     "pilotErrorCode": 0,
[2025-07-27 18:14:44]     "pilotErrorDiag": "",
[2025-07-27 18:14:44]  *** Listing of results directory ***
[2025-07-27 18:14:44] total 430944
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas    530466 Jul 24 18:31 pilot3.tar.gz
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas      5112 Jul 24 18:42 queuedata.json
[2025-07-27 18:14:44] -rwx------ 1 boincer umatlas     36292 Jul 24 18:42 runpilot2-wrapper.sh
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas       100 Jul 27 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:14:44] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 16:53 run_atlas
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas       105 Jul 27 16:53 job.xml
[2025-07-27 18:14:44] -rw-r--r-- 2 boincer umatlas 230529856 Jul 27 16:53 EVNT.45743347._000647.pool.root.1
[2025-07-27 18:14:44] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 16:53 start_atlas.sh
[2025-07-27 18:14:44] drwxrwx--x 2 boincer umatlas      4096 Jul 27 16:53 shared
[2025-07-27 18:14:44] -rw-r--r-- 2 boincer umatlas    542892 Jul 27 16:53 input.tar.gz
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas         0 Jul 27 16:53 boinc_lockfile
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas      2562 Jul 27 16:53 pandaJob.out
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas    980109 Jul 27 16:53 agis_schedconf.cvmfs.json
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas   1593052 Jul 27 16:53 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:14:44] drwx------ 4 boincer umatlas      4096 Jul 27 16:53 pilot3
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 18:12 init_data.xml
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas       529 Jul 27 18:13 boinc_task_state.xml
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas 205214875 Jul 27 18:13 HITS.45743349._011974.pool.root.1
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas        95 Jul 27 18:13 pilot_heartbeat.json
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas      1049 Jul 27 18:13 memory_monitor_summary.json
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas    372765 Jul 27 18:14 log.45743349._011974.job.log.tgz.1
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas      7853 Jul 27 18:14 heartbeat.json
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas        27 Jul 27 18:14 wrapper_checkpoint.txt
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 18:14 boinc_mmap_file
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas       745 Jul 27 18:14 pilotlog.txt
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas    459410 Jul 27 18:14 log.45743349._011974.job.log.1
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas       357 Jul 27 18:14 output.list
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas       620 Jul 27 18:14 runtime_log
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas    849920 Jul 27 18:14 result.tar.gz
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 18:14 runtime_log.err
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas       659 Jul 27 18:14 ph3LDmyoJz7n9Rq4apOajLDm4fhM0noT9bVof3QYDm91xKDmck723n.diag
[2025-07-27 18:14:44] -rw-r--r-- 1 boincer umatlas     21929 Jul 27 18:14 stderr.txt
[2025-07-27 18:14:44] HITS file was successfully produced:
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas 205214875 Jul 27 18:13 shared/HITS.pool.root.1
[2025-07-27 18:14:44]  *** Contents of shared directory: ***
[2025-07-27 18:14:44] total 426920
[2025-07-27 18:14:44] -rw-r--r-- 2 boincer umatlas 230529856 Jul 27 16:53 ATLAS.root_0
[2025-07-27 18:14:44] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 16:53 start_atlas.sh
[2025-07-27 18:14:44] -rw-r--r-- 2 boincer umatlas    542892 Jul 27 16:53 input.tar.gz
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas 205214875 Jul 27 18:13 HITS.pool.root.1
[2025-07-27 18:14:44] -rw------- 1 boincer umatlas    849920 Jul 27 18:14 result.tar.gz
18:14:46 (16666): run_atlas exited; CPU time 52199.743432
18:14:46 (16666): called boinc_finish(0)

</stderr_txt>
]]>

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