Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:13:09 (3743971): wrapper (7.7.26015): starting
12:13:09 (3743971): wrapper: running run_atlas (--nthreads 4)
[2025-07-28 12:13:09] Arguments: --nthreads 4
[2025-07-28 12:13:09] Threads: 4
[2025-07-28 12:13:09] Checking for CVMFS
[2025-07-28 12:13:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 12:13:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 12:13:09] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 12:13:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 12:13:09] 2.9.2.0 1735005 5901 97668 148844 2 57 34352480 36864000 0 130560 0 5285501 99.992 219151 1836 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-28 12:13:09] CVMFS is ok
[2025-07-28 12:13:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 12:13:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 12:13:09] Further information can be found at the LHC@home message board.
[2025-07-28 12:13:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 12:13:09] Checking for apptainer binary...
[2025-07-28 12:13:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 12:13:09] Running /usr/bin/apptainer --version
[2025-07-28 12:13:09] apptainer version 1.4.1-1.1
[2025-07-28 12:13:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 12:13:09] belleA265
[2025-07-28 12:13:09] apptainer works
[2025-07-28 12:13:09] Set ATHENA_PROC_NUMBER=4
[2025-07-28 12:13:09] Set ATHENA_CORE_NUMBER=4
[2025-07-28 12:13:09] Starting ATLAS job with PandaID=6747500216
[2025-07-28 12:13:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 13:23:08]  *** The last 200 lines of the pilot log: ***
[2025-07-28 13:23:08]  is_tar=False
[2025-07-28 13:23:08]  lfn=log.45743349._051588.job.log.tgz.1
[2025-07-28 13:23:08]  mtime=0
[2025-07-28 13:23:08]  protocol_id=None
[2025-07-28 13:23:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 13:23:08]  replicas=None
[2025-07-28 13:23:08]  scope=mc23_13p6TeV
[2025-07-28 13:23:08]  status=None
[2025-07-28 13:23:08]  status_code=0
[2025-07-28 13:23:08]  storage_token=
[2025-07-28 13:23:08]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6747500216/log.45743349._051588.job.log.tgz.1
[2025-07-28 13:23:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/93/log.45743349._051588.job.log.tgz.1
[2025-07-28 13:23:08]  workdir=None
[2025-07-28 13:23:08] ]
[2025-07-28 13:23:08] 2025-07-28 11:22:43,024 | INFO     | transferring file log.45743349._051588.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6747500216/log.45743349._051588.job.log.tgz.1 to /local/data/boinc/
[2025-07-28 13:23:08] 2025-07-28 11:22:43,024 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6747500216/log.45743349._051588.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0515
[2025-07-28 13:23:08] 2025-07-28 11:22:43,038 | INFO     | adding to output.list: log.45743349._051588.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/93/log.45743349._051588.job.log.tg
[2025-07-28 13:23:08] 2025-07-28 11:22:43,038 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 13:23:08] 2025-07-28 11:22:43,039 | INFO     | summary of transferred files:
[2025-07-28 13:23:08] 2025-07-28 11:22:43,039 | INFO     |  -- lfn=log.45743349._051588.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 13:23:08] 2025-07-28 11:22:43,039 | INFO     | stage-out finished correctly
[2025-07-28 13:23:08] 2025-07-28 11:22:44,585 | WARNING  | process 3754255 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 13:23:08] 2025-07-28 11:22:44,585 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6747500216/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 13:23:08] 2025-07-28 11:22:44,622 | INFO     | number of running child processes to parent process 3754255: 1
[2025-07-28 13:23:08] 2025-07-28 11:22:44,622 | INFO     | maximum number of monitored processes: 6
[2025-07-28 13:23:08] 2025-07-28 11:22:46,428 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 13:23:08] 2025-07-28 11:22:46,460 | INFO     | job 6747500216 has state=finished
[2025-07-28 13:23:08] 2025-07-28 11:22:46,460 | INFO     | preparing for final server update for job 6747500216 in state='finished'
[2025-07-28 13:23:08] 2025-07-28 11:22:46,460 | INFO     | this job has now completed (state=finished)
[2025-07-28 13:23:08] 2025-07-28 11:22:46,460 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 13:23:08] 2025-07-28 11:22:46,460 | INFO     | log transfer has been attempted: DONE
[2025-07-28 13:23:08] 2025-07-28 11:22:46,460 | INFO     | job 6747500216 has finished - writing final server update
[2025-07-28 13:23:08] 2025-07-28 11:22:46,460 | INFO     | total number of processed events: 400 (read)
[2025-07-28 13:23:08] 2025-07-28 11:22:46,461 | INFO     | executing command: lscpu
[2025-07-28 13:23:08] 2025-07-28 11:22:46,474 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 13:23:08] 2025-07-28 11:22:47,125 | INFO     | monitor loop #322: job 0:6747500216 is in state 'finished'
[2025-07-28 13:23:08] 2025-07-28 11:22:47,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:23:08] 2025-07-28 11:22:48,743 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 13:23:08] 2025-07-28 11:22:48,745 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3465.5685000000003
[2025-07-28 13:23:08] 2025-07-28 11:22:48,746 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6747500216/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 13:23:08] 2025-07-28 11:22:48,746 | INFO     | extracted standard info from prmon json
[2025-07-28 13:23:08] 2025-07-28 11:22:48,746 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 13:23:08] 2025-07-28 11:22:48,746 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 13:23:08] 2025-07-28 11:22:48,746 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 13:23:08] 2025-07-28 11:22:48,746 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | fitting pss+swap vs Time
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | sum of square deviations: 70364110.0
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | sum of deviations: 695955954.0000002
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | mean x: 1753699749.0
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | mean y: 2518295.4426229508
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | -- intersect: -17342940658.63007
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | intersect: -17342940658.63007
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | chi2: 0.0003418287432837593
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | -- intersect: -17342940658.63007
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | current memory leak: 9.89 B/s (using 61 data points, chi2=0.00)
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | could have reported an average CPU frequency of 3853 MHz (6 samples)
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | ..............................
[2025-07-28 13:23:08] 2025-07-28 11:22:48,747 | INFO     | . Timing measurements:
[2025-07-28 13:23:08] 2025-07-28 11:22:48,748 | INFO     | . get job = 0 s
[2025-07-28 13:23:08] 2025-07-28 11:22:48,748 | INFO     | . initial setup = 1 s
[2025-07-28 13:23:08] 2025-07-28 11:22:48,748 | INFO     | . payload setup = 3 s
[2025-07-28 13:23:08] 2025-07-28 11:22:48,748 | INFO     | . stage-in = 0 s
[2025-07-28 13:23:08] 2025-07-28 11:22:48,748 | INFO     | . payload execution = 4147 s
[2025-07-28 13:23:08] 2025-07-28 11:22:48,748 | INFO     | . stage-out = 0 s
[2025-07-28 13:23:08] 2025-07-28 11:22:48,748 | INFO     | . log creation = 0 s
[2025-07-28 13:23:08] 2025-07-28 11:22:48,748 | INFO     | ..............................
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | 
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | job summary report
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | --------------------------------------------------
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | PanDA job id: 6747500216
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | task id: 45743349
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | errors: (none)
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | pilot state: finished 
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | transexitcode: 0
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | exeerrorcode: 0
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | exeerrordiag: 
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | exitcode: 0
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | exitmsg: OK
[2025-07-28 13:23:08] 2025-07-28 11:22:49,077 | INFO     | cpuconsumptiontime: 15648 s
[2025-07-28 13:23:08] 2025-07-28 11:22:49,078 | INFO     | nevents: 400
[2025-07-28 13:23:08] 2025-07-28 11:22:49,078 | INFO     | neventsw: 0
[2025-07-28 13:23:08] 2025-07-28 11:22:49,078 | INFO     | pid: 3754255
[2025-07-28 13:23:08] 2025-07-28 11:22:49,078 | INFO     | pgrp: 3754255
[2025-07-28 13:23:08] 2025-07-28 11:22:49,078 | INFO     | corecount: 4
[2025-07-28 13:23:08] 2025-07-28 11:22:49,078 | INFO     | event service: False
[2025-07-28 13:23:08] 2025-07-28 11:22:49,078 | INFO     | sizes: {0: 2397251, 1: 2397506, 3: 2397768, 11: 2397796, 4155: 2423856, 4156: 2432860, 4159: 2433044, 4161: 2433238}
[2025-07-28 13:23:08] 2025-07-28 11:22:49,078 | INFO     | --------------------------------------------------
[2025-07-28 13:23:08] 2025-07-28 11:22:49,078 | INFO     | 
[2025-07-28 13:23:08] 2025-07-28 11:22:49,078 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-28 13:23:08] 2025-07-28 11:22:49,092 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,092 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,092 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | job 6747500216 has completed (purged errors)
[2025-07-28 13:23:08] 2025-07-28 11:22:49,093 | INFO     | overall cleanup function is called
[2025-07-28 13:23:08] 2025-07-28 11:22:50,100 | INFO     | --- collectZombieJob: --- 10, [3754255]
[2025-07-28 13:23:08] 2025-07-28 11:22:50,100 | INFO     | zombie collector waiting for pid 3754255
[2025-07-28 13:23:08] 2025-07-28 11:22:50,100 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 13:23:08] 2025-07-28 11:22:50,100 | INFO     | collected zombie processes
[2025-07-28 13:23:08] 2025-07-28 11:22:50,100 | INFO     | will attempt to kill all subprocesses of pid=3754255
[2025-07-28 13:23:08] 2025-07-28 11:22:50,143 | INFO     | process IDs to be killed: [3754255] (in reverse order)
[2025-07-28 13:23:08] 2025-07-28 11:22:50,167 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 13:23:08] 2025-07-28 11:22:50,167 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 13:23:08] 2025-07-28 11:22:50,168 | INFO     | did not find any defunct processes belonging to 3754255
[2025-07-28 13:23:08] 2025-07-28 11:22:50,169 | INFO     | did not find any defunct processes belonging to 3754255
[2025-07-28 13:23:08] 2025-07-28 11:22:50,170 | INFO     | ready for new job
[2025-07-28 13:23:08] 2025-07-28 11:22:50,170 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 13:23:08] 2025-07-28 11:22:50,170 | INFO     | ***************************************
[2025-07-28 13:23:08] 2025-07-28 11:22:50,170 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 13:23:08] 2025-07-28 11:22:50,170 | INFO     | ***************************************
[2025-07-28 13:23:08] 2025-07-28 11:22:50,170 | INFO     | 
[2025-07-28 13:23:08] 2025-07-28 11:22:50,171 | INFO     | architecture information:
[2025-07-28 13:23:08] 2025-07-28 11:22:50,171 | INFO     | executing command: cat /etc/os-release
[2025-07-28 13:23:08] 2025-07-28 11:22:50,179 | INFO     | cat /etc/os-release:
[2025-07-28 13:23:08] NAME="CentOS Linux"
[2025-07-28 13:23:08] VERSION="7 (Core)"
[2025-07-28 13:23:08] ID="centos"
[2025-07-28 13:23:08] ID_LIKE="rhel fedora"
[2025-07-28 13:23:08] VERSION_ID="7"
[2025-07-28 13:23:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 13:23:08] ANSI_COLOR="0;31"
[2025-07-28 13:23:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 13:23:08] HOME_URL="https://www.centos.org/"
[2025-07-28 13:23:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 13:23:08] 
[2025-07-28 13:23:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 13:23:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 13:23:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 13:23:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 13:23:08] 
[2025-07-28 13:23:08] 2025-07-28 11:22:50,180 | INFO     | ***************************************
[2025-07-28 13:23:08] 2025-07-28 11:22:50,683 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-28 13:23:08] 2025-07-28 11:22:50,695 | INFO     | sufficient remaining disk space (221217030144 B)
[2025-07-28 13:23:08] 2025-07-28 11:22:50,695 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 13:23:08] 2025-07-28 11:22:50,695 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 13:23:08] 2025-07-28 11:22:50,695 | INFO     | update_server=False
[2025-07-28 13:23:08] 2025-07-28 11:22:50,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 13:23:08] 2025-07-28 11:22:50,695 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:23:08] 2025-07-28 11:22:50,695 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-28 13:23:08] 2025-07-28 11:22:50,696 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 13:23:08] 2025-07-28 11:22:50,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:23:08] 2025-07-28 11:22:50,696 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 13:23:08] 2025-07-28 11:22:50,696 | INFO     | aborting loop
[2025-07-28 13:23:08] 2025-07-28 11:22:50,696 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 13:23:08] 2025-07-28 11:22:51,044 | INFO     | all job control threads have been joined
[2025-07-28 13:23:08] 2025-07-28 11:22:51,082 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 13:23:08] 2025-07-28 11:22:51,349 | INFO     | all data control threads have been joined
[2025-07-28 13:23:08] 2025-07-28 11:22:51,374 | INFO     | all payload control threads have been joined
[2025-07-28 13:23:08] 2025-07-28 11:22:51,701 | INFO     | [job] retrieve thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:51,701 | INFO     | [job] job monitor thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:51,701 | INFO     | [job] queue monitor thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:51,990 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:52,050 | INFO     | [job] control thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:52,355 | INFO     | [data] control thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:52,380 | INFO     | [payload] control thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:52,466 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 13:23:08] 2025-07-28 11:22:52,515 | INFO     | [data] copytool_in thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:52,623 | INFO     | [payload] validate_post thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:52,962 | INFO     | [payload] failed_post thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:53,050 | INFO     | [job] validate thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:53,088 | INFO     | [data] copytool_out thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:53,165 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:53,165 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:22:56,474 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:23:01,660 | INFO     | job.realtimelogging is not enabled
[2025-07-28 13:23:08] 2025-07-28 11:23:02,666 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 13:23:08] 2025-07-28 11:23:03,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140062206416704)>', '<ExcThread(monitor, started 140061349762816)>']
[2025-07-28 13:23:08] 2025-07-28 11:23:03,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 13:23:08] 2025-07-28 11:23:03,767 | INFO     | [monitor] control thread has ended
[2025-07-28 13:23:08] 2025-07-28 11:23:08,230 | INFO     | all workflow threads have been joined
[2025-07-28 13:23:08] 2025-07-28 11:23:08,230 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 13:23:08] 2025-07-28 11:23:08,230 | INFO     | traces error code: 0
[2025-07-28 13:23:08] 2025-07-28 11:23:08,231 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 13:23:08] 2025-07-28 11:23:08,281 [wrapper] ==== pilot stdout END ====
[2025-07-28 13:23:08] 2025-07-28 11:23:08,284 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 13:23:08] 2025-07-28 11:23:08,286 [wrapper] pilotpid: 3747666
[2025-07-28 13:23:08] 2025-07-28 11:23:08,288 [wrapper] Pilot exit status: 0
[2025-07-28 13:23:08] 2025-07-28 11:23:08,295 [wrapper] pandaids: 6747500216
[2025-07-28 13:23:08] 2025-07-28 11:23:08,311 [wrapper] cleanup supervisor_pilot 3764470 3747667
[2025-07-28 13:23:08] 2025-07-28 11:23:08,313 [wrapper] Test setup, not cleaning
[2025-07-28 13:23:08] 2025-07-28 11:23:08,316 [wrapper] apfmon messages muted
[2025-07-28 13:23:08] 2025-07-28 11:23:08,318 [wrapper] ==== wrapper stdout END ====
[2025-07-28 13:23:08] 2025-07-28 11:23:08,320 [wrapper] ==== wrapper stderr END ====
[2025-07-28 13:23:08]  *** Error codes and diagnostics ***
[2025-07-28 13:23:08]     "exeErrorCode": 0,
[2025-07-28 13:23:08]     "exeErrorDiag": "",
[2025-07-28 13:23:08]     "pilotErrorCode": 0,
[2025-07-28 13:23:08]     "pilotErrorDiag": "",
[2025-07-28 13:23:08]  *** Listing of results directory ***
[2025-07-28 13:23:08] total 432924
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc    530466 Jul 27 16:53 pilot3.tar.gz
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc      5112 Jul 27 17:29 queuedata.json
[2025-07-28 13:23:08] -rwx------ 1 boinc boinc     36292 Jul 27 17:34 runpilot2-wrapper.sh
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc       100 Jul 28 12:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 13:23:08] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 12:13 run_atlas
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc       105 Jul 28 12:13 job.xml
[2025-07-28 13:23:08] -rw-r--r-- 2 boinc boinc 231498345 Jul 28 12:13 EVNT.45743347._002760.pool.root.1
[2025-07-28 13:23:08] -rw-r--r-- 2 boinc boinc    542897 Jul 28 12:13 input.tar.gz
[2025-07-28 13:23:08] -rw-r--r-- 2 boinc boinc     15095 Jul 28 12:13 start_atlas.sh
[2025-07-28 13:23:08] drwxrwx--x 2 boinc boinc      4096 Jul 28 12:13 shared
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc         0 Jul 28 12:13 boinc_setup_complete
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc      6450 Jul 28 12:13 init_data.xml
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc         0 Jul 28 12:13 boinc_lockfile
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc      2563 Jul 28 12:13 pandaJob.out
[2025-07-28 13:23:08] -rw------- 1 boinc boinc    978460 Jul 28 12:13 agis_schedconf.cvmfs.json
[2025-07-28 13:23:08] -rw------- 1 boinc boinc   1593052 Jul 28 12:13 agis_ddmendpoints.agis.ALL.json
[2025-07-28 13:23:08] drwx------ 4 boinc boinc      4096 Jul 28 12:13 pilot3
[2025-07-28 13:23:08] -rw------- 1 boinc boinc 206623801 Jul 28 13:22 HITS.45743349._051588.pool.root.1
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc       529 Jul 28 13:22 boinc_task_state.xml
[2025-07-28 13:23:08] -rw------- 1 boinc boinc        95 Jul 28 13:22 pilot_heartbeat.json
[2025-07-28 13:23:08] -rw------- 1 boinc boinc      1015 Jul 28 13:22 memory_monitor_summary.json
[2025-07-28 13:23:08] -rw------- 1 boinc boinc    240721 Jul 28 13:22 log.45743349._051588.job.log.tgz.1
[2025-07-28 13:23:08] -rw------- 1 boinc boinc      7745 Jul 28 13:22 heartbeat.json
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc      8192 Jul 28 13:23 boinc_mmap_file
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc        27 Jul 28 13:23 wrapper_checkpoint.txt
[2025-07-28 13:23:08] -rw------- 1 boinc boinc      4556 Jul 28 13:23 pilotlog.txt
[2025-07-28 13:23:08] -rw------- 1 boinc boinc    415009 Jul 28 13:23 log.45743349._051588.job.log.1
[2025-07-28 13:23:08] -rw------- 1 boinc boinc       357 Jul 28 13:23 output.list
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc       620 Jul 28 13:23 runtime_log
[2025-07-28 13:23:08] -rw------- 1 boinc boinc    675840 Jul 28 13:23 result.tar.gz
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc      8749 Jul 28 13:23 runtime_log.err
[2025-07-28 13:23:08] -rw------- 1 boinc boinc       661 Jul 28 13:23 0ChNDmaZI07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnhVLDmhFg3xm.diag
[2025-07-28 13:23:08] -rw-r--r-- 1 boinc boinc     21522 Jul 28 13:23 stderr.txt
[2025-07-28 13:23:08] HITS file was successfully produced:
[2025-07-28 13:23:08] -rw------- 1 boinc boinc 206623801 Jul 28 13:22 shared/HITS.pool.root.1
[2025-07-28 13:23:08]  *** Contents of shared directory: ***
[2025-07-28 13:23:08] total 429076
[2025-07-28 13:23:08] -rw-r--r-- 2 boinc boinc 231498345 Jul 28 12:13 ATLAS.root_0
[2025-07-28 13:23:08] -rw-r--r-- 2 boinc boinc    542897 Jul 28 12:13 input.tar.gz
[2025-07-28 13:23:08] -rw-r--r-- 2 boinc boinc     15095 Jul 28 12:13 start_atlas.sh
[2025-07-28 13:23:08] -rw------- 1 boinc boinc 206623801 Jul 28 13:22 HITS.pool.root.1
[2025-07-28 13:23:08] -rw------- 1 boinc boinc    675840 Jul 28 13:23 result.tar.gz
13:23:09 (3743971): run_atlas exited; CPU time 15661.734541
13:23:09 (3743971): called boinc_finish(0)

</stderr_txt>
]]>

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