Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:02:37 (772444): wrapper (7.7.26015): starting
12:02:37 (772444): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 12:02:37] Arguments: --nthreads 6
[2025-07-28 12:02:37] Threads: 6
[2025-07-28 12:02:37] Checking for CVMFS
[2025-07-28 12:02:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 12:02:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 12:02:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 12:02:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 12:02:38] 2.11.5.0 2646 1227 70756 148832 3 57 29535140 52428801 101 130560 0 2115803 99.996 39673 13 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 12:02:38] CVMFS is ok
[2025-07-28 12:02:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 12:02:38] Checking for apptainer binary...
[2025-07-28 12:02:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 12:02:38] Running /usr/bin/apptainer --version
[2025-07-28 12:02:38] apptainer version 1.3.6-1.el9
[2025-07-28 12:02:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 12:02:38] testio002
[2025-07-28 12:02:38] apptainer works
[2025-07-28 12:02:38] Set ATHENA_PROC_NUMBER=6
[2025-07-28 12:02:38] Set ATHENA_CORE_NUMBER=6
[2025-07-28 12:02:38] Starting ATLAS job with PandaID=6747500200
[2025-07-28 12:02:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 13:10:45]  *** The last 200 lines of the pilot log: ***
[2025-07-28 13:10:45] 2025-07-28 04:09:44,390 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 13:10:45] 2025-07-28 04:09:45,092 | INFO     | job 6747500200 has state=finished
[2025-07-28 13:10:45] 2025-07-28 04:09:45,092 | INFO     | preparing for final server update for job 6747500200 in state='finished'
[2025-07-28 13:10:45] 2025-07-28 04:09:45,093 | INFO     | this job has now completed (state=finished)
[2025-07-28 13:10:45] 2025-07-28 04:09:45,093 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 13:10:45] 2025-07-28 04:09:45,093 | INFO     | log transfer has been attempted: DONE
[2025-07-28 13:10:45] 2025-07-28 04:09:45,093 | INFO     | job 6747500200 has finished - writing final server update
[2025-07-28 13:10:45] 2025-07-28 04:09:45,093 | INFO     | total number of processed events: 400 (read)
[2025-07-28 13:10:45] 2025-07-28 04:09:45,093 | INFO     | executing command: lscpu
[2025-07-28 13:10:45] 2025-07-28 04:09:45,101 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 13:10:45] 2025-07-28 04:09:46,495 | INFO     | monitor loop #296: job 0:6747500200 is in state 'finished'
[2025-07-28 13:10:45] 2025-07-28 04:09:46,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:10:45] 2025-07-28 04:09:48,998 | INFO     | monitor loop #297: job 0:6747500200 is in state 'finished'
[2025-07-28 13:10:45] 2025-07-28 04:09:48,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:10:45] 2025-07-28 04:09:51,086 | INFO     | PID=776185 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 13:10:45] 2025-07-28 04:09:51,086 | INFO     | .. there are 2 such processes running
[2025-07-28 13:10:45] 2025-07-28 04:09:51,501 | INFO     | monitor loop #298: job 0:6747500200 is in state 'finished'
[2025-07-28 13:10:45] 2025-07-28 04:09:51,501 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:10:45] 2025-07-28 04:09:54,004 | INFO     | monitor loop #299: job 0:6747500200 is in state 'finished'
[2025-07-28 13:10:45] 2025-07-28 04:09:54,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:10:45] 2025-07-28 04:09:56,506 | INFO     | monitor loop #300: job 0:6747500200 is in state 'finished'
[2025-07-28 13:10:45] 2025-07-28 04:09:56,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:10:45] 2025-07-28 04:09:59,009 | INFO     | monitor loop #301: job 0:6747500200 is in state 'finished'
[2025-07-28 13:10:45] 2025-07-28 04:09:59,009 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:10:45] 2025-07-28 04:10:01,512 | INFO     | monitor loop #302: job 0:6747500200 is in state 'finished'
[2025-07-28 13:10:45] 2025-07-28 04:10:01,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:10:45] 2025-07-28 04:10:04,015 | INFO     | monitor loop #303: job 0:6747500200 is in state 'finished'
[2025-07-28 13:10:45] 2025-07-28 04:10:04,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:10:45] 2025-07-28 04:10:06,518 | INFO     | monitor loop #304: job 0:6747500200 is in state 'finished'
[2025-07-28 13:10:45] 2025-07-28 04:10:06,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:10:45] 2025-07-28 04:10:09,021 | INFO     | monitor loop #305: job 0:6747500200 is in state 'finished'
[2025-07-28 13:10:45] 2025-07-28 04:10:09,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:10:45] 2025-07-28 04:10:11,524 | INFO     | monitor loop #306: job 0:6747500200 is in state 'finished'
[2025-07-28 13:10:45] 2025-07-28 04:10:11,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:10:45] 2025-07-28 04:10:13,090 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 13:10:45] 2025-07-28 04:10:13,091 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4400.0286875
[2025-07-28 13:10:45] 2025-07-28 04:10:13,093 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6747500200/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 13:10:45] 2025-07-28 04:10:13,093 | INFO     | extracted standard info from prmon json
[2025-07-28 13:10:45] 2025-07-28 04:10:13,093 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 13:10:45] 2025-07-28 04:10:13,093 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 13:10:45] 2025-07-28 04:10:13,093 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 13:10:45] 2025-07-28 04:10:13,094 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 13:10:45] 2025-07-28 04:10:13,094 | INFO     | fitting pss+swap vs Time
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | sum of square deviations: 63666310.0
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | sum of deviations: 12904765269.000006
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | mean x: 1753673855.0
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | mean y: 2380940.6779661016
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | -- intersect: -355456408129.35535
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | intersect: -355456408129.35535
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | chi2: 1.664877269340002
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | -- intersect: -355456408129.35535
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | current memory leak: 202.69 B/s (using 59 data points, chi2=1.66)
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | could have reported an average CPU frequency of 4328 MHz (6 samples)
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | ..............................
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | . Timing measurements:
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | . get job = 0 s
[2025-07-28 13:10:45] 2025-07-28 04:10:13,095 | INFO     | . initial setup = 5 s
[2025-07-28 13:10:45] 2025-07-28 04:10:13,096 | INFO     | . payload setup = 1 s
[2025-07-28 13:10:45] 2025-07-28 04:10:13,096 | INFO     | . stage-in = 0 s
[2025-07-28 13:10:45] 2025-07-28 04:10:13,096 | INFO     | . payload execution = 4001 s
[2025-07-28 13:10:45] 2025-07-28 04:10:13,096 | INFO     | . stage-out = 0 s
[2025-07-28 13:10:45] 2025-07-28 04:10:13,096 | INFO     | . log creation = 0 s
[2025-07-28 13:10:45] 2025-07-28 04:10:13,096 | INFO     | ..............................
[2025-07-28 13:10:45] 2025-07-28 04:10:13,162 | INFO     | 
[2025-07-28 13:10:45] 2025-07-28 04:10:13,162 | INFO     | job summary report
[2025-07-28 13:10:45] 2025-07-28 04:10:13,162 | INFO     | --------------------------------------------------
[2025-07-28 13:10:45] 2025-07-28 04:10:13,162 | INFO     | PanDA job id: 6747500200
[2025-07-28 13:10:45] 2025-07-28 04:10:13,162 | INFO     | task id: 45743349
[2025-07-28 13:10:45] 2025-07-28 04:10:13,162 | INFO     | errors: (none)
[2025-07-28 13:10:45] 2025-07-28 04:10:13,162 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 13:10:45] 2025-07-28 04:10:13,162 | INFO     | pilot state: finished 
[2025-07-28 13:10:45] 2025-07-28 04:10:13,162 | INFO     | transexitcode: 0
[2025-07-28 13:10:45] 2025-07-28 04:10:13,162 | INFO     | exeerrorcode: 0
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | exeerrordiag: 
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | exitcode: 0
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | exitmsg: OK
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | cpuconsumptiontime: 19673 s
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | nevents: 400
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | neventsw: 0
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | pid: 788671
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | pgrp: 788671
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | corecount: 6
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | event service: False
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | sizes: {0: 2397474, 1: 2397736, 10: 2397764, 4007: 2432654, 4036: 2432792}
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | --------------------------------------------------
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | 
[2025-07-28 13:10:45] 2025-07-28 04:10:13,163 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-07-28 13:10:45] 2025-07-28 04:10:13,170 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,170 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,170 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,170 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,170 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,170 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | job 6747500200 has completed (purged errors)
[2025-07-28 13:10:45] 2025-07-28 04:10:13,171 | INFO     | overall cleanup function is called
[2025-07-28 13:10:45] 2025-07-28 04:10:13,206 | INFO     | PID=776185 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 13:10:45] 2025-07-28 04:10:13,206 | INFO     | .. there are 2 such processes running
[2025-07-28 13:10:45] 2025-07-28 04:10:14,177 | INFO     | --- collectZombieJob: --- 10, [788671]
[2025-07-28 13:10:45] 2025-07-28 04:10:14,177 | INFO     | zombie collector waiting for pid 788671
[2025-07-28 13:10:45] 2025-07-28 04:10:14,177 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 13:10:45] 2025-07-28 04:10:14,177 | INFO     | collected zombie processes
[2025-07-28 13:10:45] 2025-07-28 04:10:14,177 | INFO     | will attempt to kill all subprocesses of pid=788671
[2025-07-28 13:10:45] 2025-07-28 04:10:14,230 | INFO     | process IDs to be killed: [788671] (in reverse order)
[2025-07-28 13:10:45] 2025-07-28 04:10:14,243 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 13:10:45] 2025-07-28 04:10:14,244 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 13:10:45] 2025-07-28 04:10:14,245 | INFO     | did not find any defunct processes belonging to 788671
[2025-07-28 13:10:45] 2025-07-28 04:10:14,246 | INFO     | did not find any defunct processes belonging to 788671
[2025-07-28 13:10:45] 2025-07-28 04:10:14,246 | INFO     | ready for new job
[2025-07-28 13:10:45] 2025-07-28 04:10:14,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 13:10:45] 2025-07-28 04:10:14,247 | INFO     | ***************************************
[2025-07-28 13:10:45] 2025-07-28 04:10:14,247 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 13:10:45] 2025-07-28 04:10:14,247 | INFO     | ***************************************
[2025-07-28 13:10:45] 2025-07-28 04:10:14,247 | INFO     | 
[2025-07-28 13:10:45] 2025-07-28 04:10:14,247 | INFO     | architecture information:
[2025-07-28 13:10:45] 2025-07-28 04:10:14,247 | INFO     | executing command: cat /etc/os-release
[2025-07-28 13:10:45] 2025-07-28 04:10:14,251 | INFO     | cat /etc/os-release:
[2025-07-28 13:10:45] NAME="CentOS Linux"
[2025-07-28 13:10:45] VERSION="7 (Core)"
[2025-07-28 13:10:45] ID="centos"
[2025-07-28 13:10:45] ID_LIKE="rhel fedora"
[2025-07-28 13:10:45] VERSION_ID="7"
[2025-07-28 13:10:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 13:10:45] ANSI_COLOR="0;31"
[2025-07-28 13:10:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 13:10:45] HOME_URL="https://www.centos.org/"
[2025-07-28 13:10:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 13:10:45] 
[2025-07-28 13:10:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 13:10:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 13:10:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 13:10:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 13:10:45] 
[2025-07-28 13:10:45] 2025-07-28 04:10:14,252 | INFO     | ***************************************
[2025-07-28 13:10:45] 2025-07-28 04:10:14,754 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-07-28 13:10:45] 2025-07-28 04:10:14,760 | INFO     | sufficient remaining disk space (314976501760 B)
[2025-07-28 13:10:45] 2025-07-28 04:10:14,760 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 13:10:45] 2025-07-28 04:10:14,760 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 13:10:45] 2025-07-28 04:10:14,760 | INFO     | update_server=False
[2025-07-28 13:10:45] 2025-07-28 04:10:14,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 13:10:45] 2025-07-28 04:10:14,760 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:10:45] 2025-07-28 04:10:14,924 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 13:10:45] 2025-07-28 04:10:15,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:10:45] 2025-07-28 04:10:15,030 | INFO     | aborting loop
[2025-07-28 13:10:45] 2025-07-28 04:10:15,266 | INFO     | all data control threads have been joined
[2025-07-28 13:10:45] 2025-07-28 04:10:15,765 | INFO     | [job] retrieve thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:15,765 | INFO     | [job] queue monitor thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:15,789 | INFO     | [job] validate thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:15,819 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:16,035 | INFO     | [job] job monitor thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:16,071 | INFO     | all payload control threads have been joined
[2025-07-28 13:10:45] 2025-07-28 04:10:16,107 | INFO     | all job control threads have been joined
[2025-07-28 13:10:45] 2025-07-28 04:10:16,271 | INFO     | [data] control thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:16,551 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:16,792 | INFO     | [data] copytool_in thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:16,929 | INFO     | [data] copytool_out thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:17,076 | INFO     | [payload] control thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:17,103 | INFO     | [payload] validate_post thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:17,112 | INFO     | [job] control thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:17,183 | INFO     | [payload] failed_post thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:17,216 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:17,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 13:10:45] 2025-07-28 04:10:21,440 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:24,865 | INFO     | job.realtimelogging is not enabled
[2025-07-28 13:10:45] 2025-07-28 04:10:25,870 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 13:10:45] 2025-07-28 04:10:26,170 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591317788480)>', '<ExcThread(monitor, started 140590830307072)>']
[2025-07-28 13:10:45] 2025-07-28 04:10:31,174 | INFO     | all workflow threads have been joined
[2025-07-28 13:10:45] 2025-07-28 04:10:31,174 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 13:10:45] 2025-07-28 04:10:31,174 | INFO     | traces error code: 0
[2025-07-28 13:10:45] 2025-07-28 04:10:31,174 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 13:10:45] 2025-07-28 04:10:45,311 | INFO     | PID=776185 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 13:10:45] 2025-07-28 04:10:45,311 | INFO     | .. there are 2 such processes running
[2025-07-28 13:10:45] 2025-07-28 04:10:45,311 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 13:10:45] 2025-07-28 04:10:45,311 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 13:10:45] 2025-07-28 04:10:45,311 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 13:10:45] 2025-07-28 04:10:45,311 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 13:10:45] 2025-07-28 04:10:45,311 | INFO     | [monitor] control thread has ended
[2025-07-28 13:10:45] 2025-07-28 04:10:45,365 [wrapper] ==== pilot stdout END ====
[2025-07-28 13:10:45] 2025-07-28 04:10:45,366 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 13:10:45] 2025-07-28 04:10:45,366 [wrapper] pilotpid: 776185
[2025-07-28 13:10:45] 2025-07-28 04:10:45,367 [wrapper] Pilot exit status: 0
[2025-07-28 13:10:45] 2025-07-28 04:10:45,370 [wrapper] pandaids: 6747500200
[2025-07-28 13:10:45] 2025-07-28 04:10:45,378 [wrapper] cleanup supervisor_pilot  811085 776186
[2025-07-28 13:10:45] 2025-07-28 04:10:45,379 [wrapper] Test setup, not cleaning
[2025-07-28 13:10:45] 2025-07-28 04:10:45,379 [wrapper] apfmon messages muted
[2025-07-28 13:10:45] 2025-07-28 04:10:45,380 [wrapper] ==== wrapper stdout END ====
[2025-07-28 13:10:45] 2025-07-28 04:10:45,381 [wrapper] ==== wrapper stderr END ====
[2025-07-28 13:10:45]  *** Error codes and diagnostics ***
[2025-07-28 13:10:45]     "exeErrorCode": 0,
[2025-07-28 13:10:45]     "exeErrorDiag": "",
[2025-07-28 13:10:45]     "pilotErrorCode": 0,
[2025-07-28 13:10:45]     "pilotErrorDiag": "",
[2025-07-28 13:10:45]  *** Listing of results directory ***
[2025-07-28 13:10:45] total 425112
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc    530466 Jul 27 23:53 pilot3.tar.gz
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc      5112 Jul 28 00:29 queuedata.json
[2025-07-28 13:10:45] -rwx------. 1 boinc boinc     36292 Jul 28 00:33 runpilot2-wrapper.sh
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc       100 Jul 28 12:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 13:10:45] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 12:02 run_atlas
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc       105 Jul 28 12:02 job.xml
[2025-07-28 13:10:45] -rw-r--r--. 2 boinc boinc     15095 Jul 28 12:02 start_atlas.sh
[2025-07-28 13:10:45] drwxrwx--x. 2 boinc boinc        68 Jul 28 12:02 shared
[2025-07-28 13:10:45] -rw-r--r--. 2 boinc boinc    542893 Jul 28 12:02 input.tar.gz
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc      9627 Jul 28 12:02 init_data.xml
[2025-07-28 13:10:45] -rw-r--r--. 2 boinc boinc 229158223 Jul 28 12:02 EVNT.45743347._002759.pool.root.1
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc         0 Jul 28 12:02 boinc_lockfile
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc      2562 Jul 28 12:02 pandaJob.out
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc    980125 Jul 28 12:02 agis_schedconf.cvmfs.json
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc   1593052 Jul 28 12:02 agis_ddmendpoints.agis.ALL.json
[2025-07-28 13:10:45] drwx------. 4 boinc boinc      4096 Jul 28 12:02 pilot3
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc 200877393 Jul 28 13:09 HITS.45743349._051572.pool.root.1
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc      1030 Jul 28 13:09 memory_monitor_summary.json
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc       529 Jul 28 13:09 boinc_task_state.xml
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc    282391 Jul 28 13:09 log.45743349._051572.job.log.tgz.1
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc        95 Jul 28 13:10 pilot_heartbeat.json
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc      7799 Jul 28 13:10 heartbeat.json
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc      8192 Jul 28 13:10 boinc_mmap_file
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc        27 Jul 28 13:10 wrapper_checkpoint.txt
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc       821 Jul 28 13:10 pilotlog.txt
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc    422653 Jul 28 13:10 log.45743349._051572.job.log.1
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc       357 Jul 28 13:10 output.list
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc       620 Jul 28 13:10 runtime_log
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc    727040 Jul 28 13:10 result.tar.gz
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc      8618 Jul 28 13:10 runtime_log.err
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc       642 Jul 28 13:10 A0vNDmUYI07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsgVLDmEkQnLm.diag
[2025-07-28 13:10:45] -rw-r--r--. 1 boinc boinc     22038 Jul 28 13:10 stderr.txt
[2025-07-28 13:10:45] HITS file was successfully produced:
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc 200877393 Jul 28 13:09 shared/HITS.pool.root.1
[2025-07-28 13:10:45]  *** Contents of shared directory: ***
[2025-07-28 13:10:45] total 421220
[2025-07-28 13:10:45] -rw-r--r--. 2 boinc boinc     15095 Jul 28 12:02 start_atlas.sh
[2025-07-28 13:10:45] -rw-r--r--. 2 boinc boinc    542893 Jul 28 12:02 input.tar.gz
[2025-07-28 13:10:45] -rw-r--r--. 2 boinc boinc 229158223 Jul 28 12:02 ATLAS.root_0
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc 200877393 Jul 28 13:09 HITS.pool.root.1
[2025-07-28 13:10:45] -rw-------. 1 boinc boinc    727040 Jul 28 13:10 result.tar.gz
13:10:46 (772444): run_atlas exited; CPU time 19695.844335
13:10:46 (772444): called boinc_finish(0)

</stderr_txt>
]]>

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