Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:48:49 (2430841): wrapper (7.7.26015): starting
16:48:49 (2430841): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 16:48:49] Arguments: --nthreads 8
[2025-07-27 16:48:49] Threads: 8
[2025-07-27 16:48:49] Checking for CVMFS
[2025-07-27 16:48:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:48:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:48:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:48:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:48:50] 2.13.1.0 641173 14671 255644 148823 2 335 37217787 40960000 19840 16776704 0 51446762 99.809 51205823 40410 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 16:48:50] CVMFS is ok
[2025-07-27 16:48:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:48:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:48:50] Further information can be found at the LHC@home message board.
[2025-07-27 16:48:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:48:50] Checking for apptainer binary...
[2025-07-27 16:48:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:48:50] Running /usr/bin/apptainer --version
[2025-07-27 16:48:50] apptainer version 1.4.1-1.el9
[2025-07-27 16:48:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:48:50] c-212-8.aglt2.org
[2025-07-27 16:48:50] apptainer works
[2025-07-27 16:48:50] Set ATHENA_PROC_NUMBER=8
[2025-07-27 16:48:50] Set ATHENA_CORE_NUMBER=8
[2025-07-27 16:48:50] Starting ATLAS job with PandaID=6747500191
[2025-07-27 16:48:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:03:19]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:03:19] 2025-07-27 23:02:45,516 | INFO     | monitor loop #561: job 0:6747500191 is in state 'finished'
[2025-07-27 19:03:19] 2025-07-27 23:02:45,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:03:19] 2025-07-27 23:02:45,693 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 19:03:19] 2025-07-27 23:02:45,699 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2942.8482708333327
[2025-07-27 19:03:19] 2025-07-27 23:02:45,715 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747500191/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:03:19] 2025-07-27 23:02:45,716 | INFO     | extracted standard info from prmon json
[2025-07-27 19:03:19] 2025-07-27 23:02:45,716 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:03:19] 2025-07-27 23:02:45,716 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:03:19] 2025-07-27 23:02:45,716 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:03:19] 2025-07-27 23:02:45,717 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:03:19] 2025-07-27 23:02:45,719 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:03:19] 2025-07-27 23:02:45,719 | INFO     | sum of square deviations: 697054930.0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,720 | INFO     | sum of deviations: 7870690980.999999
[2025-07-27 19:03:19] 2025-07-27 23:02:45,720 | INFO     | mean x: 1753653344.0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,720 | INFO     | mean y: 2517255.2671755725
[2025-07-27 19:03:19] 2025-07-27 23:02:45,720 | INFO     | -- intersect: -19798595920.162613
[2025-07-27 19:03:19] 2025-07-27 23:02:45,720 | INFO     | intersect: -19798595920.162613
[2025-07-27 19:03:19] 2025-07-27 23:02:45,720 | INFO     | chi2: 1.3268382735222723
[2025-07-27 19:03:19] 2025-07-27 23:02:45,720 | INFO     | sum of square deviations: 620244187.5
[2025-07-27 19:03:19] 2025-07-27 23:02:45,721 | INFO     | sum of deviations: 7595772307.500002
[2025-07-27 19:03:19] 2025-07-27 23:02:45,721 | INFO     | mean x: 1753653191.5
[2025-07-27 19:03:19] 2025-07-27 23:02:45,721 | INFO     | mean y: 2516710.1825396824
[2025-07-27 19:03:19] 2025-07-27 23:02:45,721 | INFO     | -- intersect: -21473461005.375977
[2025-07-27 19:03:19] 2025-07-27 23:02:45,721 | INFO     | intersect: -21473461005.375977
[2025-07-27 19:03:19] 2025-07-27 23:02:45,721 | INFO     | chi2: 1.3284648461482886
[2025-07-27 19:03:19] 2025-07-27 23:02:45,721 | INFO     | current chi2=1.3284648461482886 (change=-0.12259011957036252 %)
[2025-07-27 19:03:19] 2025-07-27 23:02:45,722 | INFO     | right removable region: 125
[2025-07-27 19:03:19] 2025-07-27 23:02:45,722 | INFO     | sum of square deviations: 620244187.5
[2025-07-27 19:03:19] 2025-07-27 23:02:45,722 | INFO     | sum of deviations: -9408581226.5
[2025-07-27 19:03:19] 2025-07-27 23:02:45,722 | INFO     | mean x: 1753653496.5
[2025-07-27 19:03:19] 2025-07-27 23:02:45,722 | INFO     | mean y: 2550911.4206349207
[2025-07-27 19:03:19] 2025-07-27 23:02:45,722 | INFO     | -- intersect: 26603995467.4101
[2025-07-27 19:03:19] 2025-07-27 23:02:45,723 | INFO     | intersect: 26603995467.4101
[2025-07-27 19:03:19] 2025-07-27 23:02:45,723 | INFO     | chi2: 0.06406294525793382
[2025-07-27 19:03:19] 2025-07-27 23:02:45,723 | INFO     | current chi2=0.06406294525793382 (change=95.17175932166397 %)
[2025-07-27 19:03:19] 2025-07-27 23:02:45,723 | INFO     | sum of square deviations: 549294020.0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,723 | INFO     | sum of deviations: -8442432025.0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,723 | INFO     | mean x: 1753653649.0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,723 | INFO     | mean y: 2548742.5702479337
[2025-07-27 19:03:19] 2025-07-27 23:02:45,724 | INFO     | -- intersect: 26955512343.149242
[2025-07-27 19:03:19] 2025-07-27 23:02:45,724 | INFO     | intersect: 26955512343.149242
[2025-07-27 19:03:19] 2025-07-27 23:02:45,724 | INFO     | chi2: 0.05267306782516016
[2025-07-27 19:03:19] 2025-07-27 23:02:45,724 | INFO     | current chi2=0.05267306782516016 (change=17.779197298711605 %)
[2025-07-27 19:03:19] 2025-07-27 23:02:45,724 | INFO     | left removable region: 20
[2025-07-27 19:03:19] 2025-07-27 23:02:45,724 | INFO     | sum of square deviations: 358927660.0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,725 | INFO     | sum of deviations: -2606632053.0000005
[2025-07-27 19:03:19] 2025-07-27 23:02:45,725 | INFO     | mean x: 1753653771.0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,725 | INFO     | mean y: 2534915.504761905
[2025-07-27 19:03:19] 2025-07-27 23:02:45,725 | INFO     | -- intersect: 12738054182.403622
[2025-07-27 19:03:19] 2025-07-27 23:02:45,725 | INFO     | intersect: 12738054182.403622
[2025-07-27 19:03:19] 2025-07-27 23:02:45,725 | INFO     | chi2: 0.030023631979034352
[2025-07-27 19:03:19] 2025-07-27 23:02:45,725 | INFO     | -- intersect: 12738054182.403622
[2025-07-27 19:03:19] 2025-07-27 23:02:45,725 | INFO     | current memory leak: -7.26 B/s (using 105 data points, chi2=0.03)
[2025-07-27 19:03:19] 2025-07-27 23:02:45,726 | INFO     | could have reported an average CPU frequency of 2918 MHz (8 samples)
[2025-07-27 19:03:19] 2025-07-27 23:02:45,726 | INFO     | ..............................
[2025-07-27 19:03:19] 2025-07-27 23:02:45,726 | INFO     | . Timing measurements:
[2025-07-27 19:03:19] 2025-07-27 23:02:45,726 | INFO     | . get job = 0 s
[2025-07-27 19:03:19] 2025-07-27 23:02:45,726 | INFO     | . initial setup = 2 s
[2025-07-27 19:03:19] 2025-07-27 23:02:45,726 | INFO     | . payload setup = 9 s
[2025-07-27 19:03:19] 2025-07-27 23:02:45,726 | INFO     | . stage-in = 0 s
[2025-07-27 19:03:19] 2025-07-27 23:02:45,726 | INFO     | . payload execution = 7977 s
[2025-07-27 19:03:19] 2025-07-27 23:02:45,727 | INFO     | . stage-out = 0 s
[2025-07-27 19:03:19] 2025-07-27 23:02:45,727 | INFO     | . log creation = 0 s
[2025-07-27 19:03:19] 2025-07-27 23:02:45,727 | INFO     | ..............................
[2025-07-27 19:03:19] 2025-07-27 23:02:45,804 | INFO     | 
[2025-07-27 19:03:19] 2025-07-27 23:02:45,804 | INFO     | job summary report
[2025-07-27 19:03:19] 2025-07-27 23:02:45,804 | INFO     | --------------------------------------------------
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | PanDA job id: 6747500191
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | task id: 45743349
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | errors: (none)
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | pilot state: finished 
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | transexitcode: 0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | exeerrorcode: 0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | exeerrordiag: 
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | exitcode: 0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | exitmsg: OK
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | cpuconsumptiontime: 44691 s
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | nevents: 400
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | neventsw: 0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,805 | INFO     | pid: 2442403
[2025-07-27 19:03:19] 2025-07-27 23:02:45,806 | INFO     | pgrp: 2442403
[2025-07-27 19:03:19] 2025-07-27 23:02:45,806 | INFO     | corecount: 8
[2025-07-27 19:03:19] 2025-07-27 23:02:45,806 | INFO     | event service: False
[2025-07-27 19:03:19] 2025-07-27 23:02:45,806 | INFO     | sizes: {0: 2397424, 7: 2397686, 11: 2397714, 7990: 2425430, 7992: 2434428, 7994: 2434484, 8003: 2434806}
[2025-07-27 19:03:19] 2025-07-27 23:02:45,806 | INFO     | --------------------------------------------------
[2025-07-27 19:03:19] 2025-07-27 23:02:45,806 | INFO     | 
[2025-07-27 19:03:19] 2025-07-27 23:02:45,806 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 19:03:19] 2025-07-27 23:02:45,826 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,826 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,826 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,826 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,826 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,826 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,826 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,826 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,826 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,826 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | job 6747500191 has completed (purged errors)
[2025-07-27 19:03:19] 2025-07-27 23:02:45,827 | INFO     | overall cleanup function is called
[2025-07-27 19:03:19] 2025-07-27 23:02:46,541 | INFO     | PID=2434477 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 19:03:19] 2025-07-27 23:02:46,541 | INFO     | .. there are 17 such processes running
[2025-07-27 19:03:19] 2025-07-27 23:02:46,835 | INFO     | --- collectZombieJob: --- 10, [2442403]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,835 | INFO     | zombie collector waiting for pid 2442403
[2025-07-27 19:03:19] 2025-07-27 23:02:46,835 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:03:19] 2025-07-27 23:02:46,835 | INFO     | collected zombie processes
[2025-07-27 19:03:19] 2025-07-27 23:02:46,835 | INFO     | will attempt to kill all subprocesses of pid=2442403
[2025-07-27 19:03:19] 2025-07-27 23:02:47,292 | INFO     | process IDs to be killed: [2442403] (in reverse order)
[2025-07-27 19:03:19] 2025-07-27 23:02:47,442 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:03:19] 2025-07-27 23:02:47,443 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:03:19] 2025-07-27 23:02:47,459 | INFO     | did not find any defunct processes belonging to 2442403
[2025-07-27 19:03:19] 2025-07-27 23:02:47,476 | INFO     | did not find any defunct processes belonging to 2442403
[2025-07-27 19:03:19] 2025-07-27 23:02:47,476 | INFO     | ready for new job
[2025-07-27 19:03:19] 2025-07-27 23:02:47,476 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:03:19] 2025-07-27 23:02:47,478 | INFO     | ***************************************
[2025-07-27 19:03:19] 2025-07-27 23:02:47,478 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:03:19] 2025-07-27 23:02:47,478 | INFO     | ***************************************
[2025-07-27 19:03:19] 2025-07-27 23:02:47,478 | INFO     | 
[2025-07-27 19:03:19] 2025-07-27 23:02:47,483 | INFO     | architecture information:
[2025-07-27 19:03:19] 2025-07-27 23:02:47,484 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:03:19] 2025-07-27 23:02:47,514 | INFO     | cat /etc/os-release:
[2025-07-27 19:03:19] NAME="CentOS Linux"
[2025-07-27 19:03:19] VERSION="7 (Core)"
[2025-07-27 19:03:19] ID="centos"
[2025-07-27 19:03:19] ID_LIKE="rhel fedora"
[2025-07-27 19:03:19] VERSION_ID="7"
[2025-07-27 19:03:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:03:19] ANSI_COLOR="0;31"
[2025-07-27 19:03:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:03:19] HOME_URL="https://www.centos.org/"
[2025-07-27 19:03:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:03:19] 
[2025-07-27 19:03:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:03:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:03:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:03:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:03:19] 
[2025-07-27 19:03:19] 2025-07-27 23:02:47,515 | INFO     | ***************************************
[2025-07-27 19:03:19] 2025-07-27 23:02:48,018 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 19:03:19] 2025-07-27 23:02:48,045 | INFO     | sufficient remaining disk space (128685441024 B)
[2025-07-27 19:03:19] 2025-07-27 23:02:48,046 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:03:19] 2025-07-27 23:02:48,046 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:03:19] 2025-07-27 23:02:48,046 | INFO     | update_server=False
[2025-07-27 19:03:19] 2025-07-27 23:02:48,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:03:19] 2025-07-27 23:02:48,046 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:03:19] 2025-07-27 23:02:48,046 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:03:19] 2025-07-27 23:02:48,307 | INFO     | all payload control threads have been joined
[2025-07-27 19:03:19] 2025-07-27 23:02:48,820 | INFO     | all job control threads have been joined
[2025-07-27 19:03:19] 2025-07-27 23:02:49,029 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:03:19] 2025-07-27 23:02:49,030 | INFO     | aborting loop
[2025-07-27 19:03:19] 2025-07-27 23:02:49,051 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:49,149 | INFO     | all data control threads have been joined
[2025-07-27 19:03:19] 2025-07-27 23:02:49,182 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:49,313 | INFO     | [payload] control thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:49,416 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:49,430 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:49,440 | INFO     | [job] validate thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:49,827 | INFO     | [job] control thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,035 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,054 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,069 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,153 | INFO     | [data] control thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,282 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,554 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,578 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,814 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:03:19] 2025-07-27 23:02:51,820 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:52,054 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:53,145 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139986951300928)>', '<ExcThread(monitor, started 139986422699776)>']
[2025-07-27 19:03:19] 2025-07-27 23:02:58,185 | INFO     | all workflow threads have been joined
[2025-07-27 19:03:19] 2025-07-27 23:02:58,186 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:03:19] 2025-07-27 23:02:58,186 | INFO     | traces error code: 0
[2025-07-27 19:03:19] 2025-07-27 23:02:58,186 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:03:19] 2025-07-27 23:03:19,109 | INFO     | PID=2434477 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:03:19] 2025-07-27 23:03:19,111 | INFO     | .. there are 17 such processes running
[2025-07-27 19:03:19] 2025-07-27 23:03:19,112 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:03:19] 2025-07-27 23:03:19,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:03:19] 2025-07-27 23:03:19,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:03:19] 2025-07-27 23:03:19,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:03:19] 2025-07-27 23:03:19,112 | INFO     | [monitor] control thread has ended
[2025-07-27 19:03:19] 2025-07-27 23:03:19,531 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:03:19] 2025-07-27 23:03:19,534 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:03:19] 2025-07-27 23:03:19,538 [wrapper] pilotpid: 2434477
[2025-07-27 19:03:19] 2025-07-27 23:03:19,542 [wrapper] Pilot exit status: 0
[2025-07-27 19:03:19] 2025-07-27 23:03:19,558 [wrapper] pandaids: 6747500191
[2025-07-27 19:03:19] 2025-07-27 23:03:19,669 [wrapper] cleanup supervisor_pilot 2802699 2434478
[2025-07-27 19:03:19] 2025-07-27 23:03:19,674 [wrapper] Test setup, not cleaning
[2025-07-27 19:03:19] 2025-07-27 23:03:19,678 [wrapper] apfmon messages muted
[2025-07-27 19:03:19] 2025-07-27 23:03:19,683 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:03:19] 2025-07-27 23:03:19,688 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:03:19]  *** Error codes and diagnostics ***
[2025-07-27 19:03:19]     "exeErrorCode": 0,
[2025-07-27 19:03:19]     "exeErrorDiag": "",
[2025-07-27 19:03:19]     "pilotErrorCode": 0,
[2025-07-27 19:03:19]     "pilotErrorDiag": "",
[2025-07-27 19:03:19]  *** Listing of results directory ***
[2025-07-27 19:03:19] total 433528
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:29 queuedata.json
[2025-07-27 19:03:19] -rwx------. 1 boincer umatlas     36292 Jul 27 11:30 runpilot2-wrapper.sh
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:03:19] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:48 run_atlas
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:48 job.xml
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas 229158223 Jul 27 16:48 EVNT.45743347._002759.pool.root.1
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:48 start_atlas.sh
[2025-07-27 19:03:19] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:48 shared
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 16:48 input.tar.gz
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:48 boinc_lockfile
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 16:48 pandaJob.out
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas    980109 Jul 27 16:49 agis_schedconf.cvmfs.json
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:49 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:03:19] drwx------. 4 boincer umatlas      4096 Jul 27 16:49 pilot3
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas 208738226 Jul 27 19:02 HITS.45743349._051563.pool.root.1
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:02 boinc_task_state.xml
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas      1032 Jul 27 19:02 memory_monitor_summary.json
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas        95 Jul 27 19:02 pilot_heartbeat.json
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas    342203 Jul 27 19:02 log.45743349._051563.job.log.tgz.1
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas      7769 Jul 27 19:02 heartbeat.json
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas      6943 Jul 27 19:03 init_data.xml
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:03 boinc_mmap_file
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:03 wrapper_checkpoint.txt
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas       823 Jul 27 19:03 pilotlog.txt
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas    739258 Jul 27 19:03 log.45743349._051563.job.log.1
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas       357 Jul 27 19:03 output.list
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:03 runtime_log
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas   1095680 Jul 27 19:03 result.tar.gz
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas       651 Jul 27 19:03 wzSKDmgVI07n9Rq4apOajLDm4fhM0noT9bVof3QYDmMk2KDmwTWWfm.diag
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 19:03 runtime_log.err
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas     21238 Jul 27 19:03 stderr.txt
[2025-07-27 19:03:19] HITS file was successfully produced:
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas 208738226 Jul 27 19:02 shared/HITS.pool.root.1
[2025-07-27 19:03:19]  *** Contents of shared directory: ***
[2025-07-27 19:03:19] total 429264
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas 229158223 Jul 27 16:48 ATLAS.root_0
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:48 start_atlas.sh
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 16:48 input.tar.gz
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas 208738226 Jul 27 19:02 HITS.pool.root.1
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas   1095680 Jul 27 19:03 result.tar.gz
19:03:21 (2430841): run_atlas exited; CPU time 44911.846179
19:03:21 (2430841): called boinc_finish(0)

</stderr_txt>
]]>

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