Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:25:17 (2116054): wrapper (7.7.26015): starting
09:25:17 (2116054): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 09:25:17] Arguments: --nthreads 6
[2025-07-28 09:25:17] Threads: 6
[2025-07-28 09:25:17] Checking for CVMFS
[2025-07-28 09:25:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 09:25:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 09:25:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 09:25:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 09:25:18] 2.11.5.0 2723278 4492 73144 148829 0 57 52227110 52428801 129 130560 0 9948012 99.997 156528 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 09:25:18] CVMFS is ok
[2025-07-28 09:25:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 09:25:18] Checking for apptainer binary...
[2025-07-28 09:25:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 09:25:18] Running /usr/bin/apptainer --version
[2025-07-28 09:25:18] apptainer version 1.3.5-1.el9
[2025-07-28 09:25:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 09:25:18] testio008
[2025-07-28 09:25:18] apptainer works
[2025-07-28 09:25:18] Set ATHENA_PROC_NUMBER=6
[2025-07-28 09:25:18] Set ATHENA_CORE_NUMBER=6
[2025-07-28 09:25:18] Starting ATLAS job with PandaID=6747500091
[2025-07-28 09:25:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 10:50:43]  *** The last 200 lines of the pilot log: ***
[2025-07-28 10:50:43] 2025-07-28 01:49:31,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:49:34,435 | INFO     | monitor loop #384: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:49:34,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:49:36,938 | INFO     | monitor loop #385: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:49:36,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:49:39,075 | INFO     | PID=2122341 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 10:50:43] 2025-07-28 01:49:39,075 | INFO     | .. there are 3 such processes running
[2025-07-28 10:50:43] 2025-07-28 01:49:39,441 | INFO     | monitor loop #386: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:49:39,441 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:49:41,944 | INFO     | monitor loop #387: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:49:41,944 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:49:44,447 | INFO     | monitor loop #388: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:49:44,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:49:46,949 | INFO     | monitor loop #389: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:49:46,949 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:49:49,452 | INFO     | monitor loop #390: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:49:49,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:49:51,955 | INFO     | monitor loop #391: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:49:51,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:49:54,458 | INFO     | monitor loop #392: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:49:54,459 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:49:56,962 | INFO     | monitor loop #393: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:49:56,962 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:49:59,465 | INFO     | monitor loop #394: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:49:59,465 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:50:01,157 | INFO     | PID=2122341 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 10:50:43] 2025-07-28 01:50:01,157 | INFO     | .. there are 3 such processes running
[2025-07-28 10:50:43] 2025-07-28 01:50:01,968 | INFO     | monitor loop #395: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:50:01,968 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:50:04,163 | INFO     | 5083s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-28 10:50:43] 2025-07-28 01:50:04,471 | INFO     | monitor loop #396: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:50:04,471 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:50:06,974 | INFO     | monitor loop #397: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:50:06,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:50:09,477 | INFO     | monitor loop #398: job 0:6747500091 is in state 'finished'
[2025-07-28 10:50:43] 2025-07-28 01:50:09,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:50:43] 2025-07-28 01:50:11,872 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 10:50:43] 2025-07-28 01:50:11,874 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 3724.0523999999996
[2025-07-28 10:50:43] 2025-07-28 01:50:11,875 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6747500091/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 10:50:43] 2025-07-28 01:50:11,876 | INFO     | extracted standard info from prmon json
[2025-07-28 10:50:43] 2025-07-28 01:50:11,876 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 10:50:43] 2025-07-28 01:50:11,876 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 10:50:43] 2025-07-28 01:50:11,876 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 10:50:43] 2025-07-28 01:50:11,876 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 10:50:43] 2025-07-28 01:50:11,876 | INFO     | fitting pss+swap vs Time
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | sum of square deviations: 130793150.0
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | sum of deviations: 11719199219.999998
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | mean x: 1753664901.0
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | mean y: 2421109.24
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | -- intersect: -157127737006.38437
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | intersect: -157127737006.38437
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | chi2: 1.5720069574696578
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | -- intersect: -157127737006.38437
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | current memory leak: 89.60 B/s (using 75 data points, chi2=1.57)
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | could have reported an average CPU frequency of 3218 MHz (6 samples)
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | ..............................
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | . Timing measurements:
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | . get job = 0 s
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | . initial setup = 3 s
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | . payload setup = 1 s
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | . stage-in = 0 s
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | . payload execution = 4997 s
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | . stage-out = 0 s
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | . log creation = 0 s
[2025-07-28 10:50:43] 2025-07-28 01:50:11,877 | INFO     | ..............................
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | 
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | job summary report
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | --------------------------------------------------
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | PanDA job id: 6747500091
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | task id: 45743349
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | errors: (none)
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | pilot state: finished 
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | transexitcode: 0
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | exeerrorcode: 0
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | exeerrordiag: 
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | exitcode: 0
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | exitmsg: OK
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | cpuconsumptiontime: 25637 s
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | nevents: 400
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | neventsw: 0
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | pid: 2143439
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | pgrp: 2143439
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | corecount: 6
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | event service: False
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | sizes: {0: 2397475, 1: 2397737, 11: 2397765, 5002: 2433096, 5076: 2433234}
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | --------------------------------------------------
[2025-07-28 10:50:43] 2025-07-28 01:50:11,928 | INFO     | 
[2025-07-28 10:50:43] 2025-07-28 01:50:11,929 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-07-28 10:50:43] 2025-07-28 01:50:11,937 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | job 6747500091 has completed (purged errors)
[2025-07-28 10:50:43] 2025-07-28 01:50:11,938 | INFO     | overall cleanup function is called
[2025-07-28 10:50:43] 2025-07-28 01:50:12,944 | INFO     | --- collectZombieJob: --- 10, [2143439]
[2025-07-28 10:50:43] 2025-07-28 01:50:12,944 | INFO     | zombie collector waiting for pid 2143439
[2025-07-28 10:50:43] 2025-07-28 01:50:12,944 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 10:50:43] 2025-07-28 01:50:12,944 | INFO     | collected zombie processes
[2025-07-28 10:50:43] 2025-07-28 01:50:12,944 | INFO     | will attempt to kill all subprocesses of pid=2143439
[2025-07-28 10:50:43] 2025-07-28 01:50:12,969 | INFO     | process IDs to be killed: [2143439] (in reverse order)
[2025-07-28 10:50:43] 2025-07-28 01:50:12,986 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 10:50:43] 2025-07-28 01:50:12,987 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 10:50:43] 2025-07-28 01:50:12,988 | INFO     | did not find any defunct processes belonging to 2143439
[2025-07-28 10:50:43] 2025-07-28 01:50:12,989 | INFO     | did not find any defunct processes belonging to 2143439
[2025-07-28 10:50:43] 2025-07-28 01:50:12,989 | INFO     | ready for new job
[2025-07-28 10:50:43] 2025-07-28 01:50:12,989 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 10:50:43] 2025-07-28 01:50:12,990 | INFO     | ***************************************
[2025-07-28 10:50:43] 2025-07-28 01:50:12,990 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 10:50:43] 2025-07-28 01:50:12,990 | INFO     | ***************************************
[2025-07-28 10:50:43] 2025-07-28 01:50:12,990 | INFO     | 
[2025-07-28 10:50:43] 2025-07-28 01:50:12,990 | INFO     | architecture information:
[2025-07-28 10:50:43] 2025-07-28 01:50:12,990 | INFO     | executing command: cat /etc/os-release
[2025-07-28 10:50:43] 2025-07-28 01:50:12,997 | INFO     | cat /etc/os-release:
[2025-07-28 10:50:43] NAME="CentOS Linux"
[2025-07-28 10:50:43] VERSION="7 (Core)"
[2025-07-28 10:50:43] ID="centos"
[2025-07-28 10:50:43] ID_LIKE="rhel fedora"
[2025-07-28 10:50:43] VERSION_ID="7"
[2025-07-28 10:50:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 10:50:43] ANSI_COLOR="0;31"
[2025-07-28 10:50:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 10:50:43] HOME_URL="https://www.centos.org/"
[2025-07-28 10:50:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 10:50:43] 
[2025-07-28 10:50:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 10:50:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 10:50:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 10:50:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 10:50:43] 
[2025-07-28 10:50:43] 2025-07-28 01:50:12,997 | INFO     | ***************************************
[2025-07-28 10:50:43] 2025-07-28 01:50:13,500 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-07-28 10:50:43] 2025-07-28 01:50:13,507 | INFO     | sufficient remaining disk space (271355740160 B)
[2025-07-28 10:50:43] 2025-07-28 01:50:13,507 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 10:50:43] 2025-07-28 01:50:13,507 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 10:50:43] 2025-07-28 01:50:13,507 | INFO     | update_server=False
[2025-07-28 10:50:43] 2025-07-28 01:50:13,507 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 10:50:43] 2025-07-28 01:50:13,508 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 10:50:43] 2025-07-28 01:50:13,508 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 10:50:43] 2025-07-28 01:50:13,508 | INFO     | aborting loop
[2025-07-28 10:50:43] 2025-07-28 01:50:13,886 | INFO     | all data control threads have been joined
[2025-07-28 10:50:43] 2025-07-28 01:50:14,039 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 10:50:43] 2025-07-28 01:50:14,083 | INFO     | all payload control threads have been joined
[2025-07-28 10:50:43] 2025-07-28 01:50:14,217 | INFO     | all job control threads have been joined
[2025-07-28 10:50:43] 2025-07-28 01:50:14,509 | INFO     | [job] job monitor thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:14,513 | INFO     | [job] retrieve thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:14,513 | INFO     | [job] queue monitor thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:14,890 | INFO     | [data] control thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:15,087 | INFO     | [payload] control thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:15,222 | INFO     | [job] control thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:15,479 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:15,591 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:15,809 | INFO     | [payload] failed_post thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:15,830 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:15,924 | INFO     | [data] copytool_in thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:16,015 | INFO     | [job] validate thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:16,016 | INFO     | [payload] validate_post thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:16,044 | INFO     | [data] copytool_out thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:16,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 10:50:43] 2025-07-28 01:50:20,542 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:24,322 | INFO     | job.realtimelogging is not enabled
[2025-07-28 10:50:43] 2025-07-28 01:50:25,328 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 10:50:43] 2025-07-28 01:50:26,617 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642832566080)>', '<ExcThread(monitor, started 139642204583680)>']
[2025-07-28 10:50:43] 2025-07-28 01:50:31,642 | INFO     | all workflow threads have been joined
[2025-07-28 10:50:43] 2025-07-28 01:50:31,642 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 10:50:43] 2025-07-28 01:50:31,642 | INFO     | traces error code: 0
[2025-07-28 10:50:43] 2025-07-28 01:50:31,642 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 10:50:43] 2025-07-28 01:50:43,285 | INFO     | PID=2122341 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 10:50:43] 2025-07-28 01:50:43,285 | INFO     | .. there are 3 such processes running
[2025-07-28 10:50:43] 2025-07-28 01:50:43,285 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 10:50:43] 2025-07-28 01:50:43,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 10:50:43] 2025-07-28 01:50:43,285 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 10:50:43] 2025-07-28 01:50:43,285 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 10:50:43] 2025-07-28 01:50:43,286 | INFO     | [monitor] control thread has ended
[2025-07-28 10:50:43] 2025-07-28 01:50:43,320 [wrapper] ==== pilot stdout END ====
[2025-07-28 10:50:43] 2025-07-28 01:50:43,321 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 10:50:43] 2025-07-28 01:50:43,322 [wrapper] pilotpid: 2122341
[2025-07-28 10:50:43] 2025-07-28 01:50:43,323 [wrapper] Pilot exit status: 0
[2025-07-28 10:50:43] 2025-07-28 01:50:43,326 [wrapper] pandaids: 6747500091
[2025-07-28 10:50:43] 2025-07-28 01:50:43,333 [wrapper] cleanup supervisor_pilot 2181091 2122342
[2025-07-28 10:50:43] 2025-07-28 01:50:43,334 [wrapper] Test setup, not cleaning
[2025-07-28 10:50:43] 2025-07-28 01:50:43,334 [wrapper] apfmon messages muted
[2025-07-28 10:50:43] 2025-07-28 01:50:43,335 [wrapper] ==== wrapper stdout END ====
[2025-07-28 10:50:43] 2025-07-28 01:50:43,336 [wrapper] ==== wrapper stderr END ====
[2025-07-28 10:50:43]  *** Error codes and diagnostics ***
[2025-07-28 10:50:43]     "exeErrorCode": 0,
[2025-07-28 10:50:43]     "exeErrorDiag": "",
[2025-07-28 10:50:43]     "pilotErrorCode": 0,
[2025-07-28 10:50:43]     "pilotErrorDiag": "",
[2025-07-28 10:50:43]  *** Listing of results directory ***
[2025-07-28 10:50:43] total 429040
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc    530466 Jul 27 23:53 pilot3.tar.gz
[2025-07-28 10:50:43] -rwx------. 1 boinc boinc     36292 Jul 28 00:26 runpilot2-wrapper.sh
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc      5112 Jul 28 00:26 queuedata.json
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc       100 Jul 28 09:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 10:50:43] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 09:25 run_atlas
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc       105 Jul 28 09:25 job.xml
[2025-07-28 10:50:43] -rw-r--r--. 2 boinc boinc 230400928 Jul 28 09:25 EVNT.45743347._002755.pool.root.1
[2025-07-28 10:50:43] -rw-r--r--. 2 boinc boinc     15095 Jul 28 09:25 start_atlas.sh
[2025-07-28 10:50:43] drwxrwx--x. 2 boinc boinc        68 Jul 28 09:25 shared
[2025-07-28 10:50:43] -rw-r--r--. 2 boinc boinc    542899 Jul 28 09:25 input.tar.gz
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc         0 Jul 28 09:25 boinc_lockfile
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc      2563 Jul 28 09:25 pandaJob.out
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc    980125 Jul 28 09:25 agis_schedconf.cvmfs.json
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc   1593052 Jul 28 09:25 agis_ddmendpoints.agis.ALL.json
[2025-07-28 10:50:43] drwx------. 4 boinc boinc      4096 Jul 28 09:25 pilot3
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc      9515 Jul 28 10:30 init_data.xml
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc 203507114 Jul 28 10:48 HITS.45743349._051463.pool.root.1
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc       529 Jul 28 10:48 boinc_task_state.xml
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc      1019 Jul 28 10:48 memory_monitor_summary.json
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc    280285 Jul 28 10:48 log.45743349._051463.job.log.tgz.1
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc        95 Jul 28 10:50 pilot_heartbeat.json
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc      7763 Jul 28 10:50 heartbeat.json
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc        27 Jul 28 10:50 wrapper_checkpoint.txt
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc      8192 Jul 28 10:50 boinc_mmap_file
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc       822 Jul 28 10:50 pilotlog.txt
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc    500353 Jul 28 10:50 log.45743349._051463.job.log.1
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc       357 Jul 28 10:50 output.list
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc       620 Jul 28 10:50 runtime_log
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc    798720 Jul 28 10:50 result.tar.gz
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc      8618 Jul 28 10:50 runtime_log.err
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc       642 Jul 28 10:50 ddOMDmURI07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxeVLDmCRhmjn.diag
[2025-07-28 10:50:43] -rw-r--r--. 1 boinc boinc     22134 Jul 28 10:50 stderr.txt
[2025-07-28 10:50:43] HITS file was successfully produced:
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc 203507114 Jul 28 10:48 shared/HITS.pool.root.1
[2025-07-28 10:50:43]  *** Contents of shared directory: ***
[2025-07-28 10:50:43] total 425072
[2025-07-28 10:50:43] -rw-r--r--. 2 boinc boinc 230400928 Jul 28 09:25 ATLAS.root_0
[2025-07-28 10:50:43] -rw-r--r--. 2 boinc boinc     15095 Jul 28 09:25 start_atlas.sh
[2025-07-28 10:50:43] -rw-r--r--. 2 boinc boinc    542899 Jul 28 09:25 input.tar.gz
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc 203507114 Jul 28 10:48 HITS.pool.root.1
[2025-07-28 10:50:43] -rw-------. 1 boinc boinc    798720 Jul 28 10:50 result.tar.gz
10:50:45 (2116054): run_atlas exited; CPU time 25666.934488
10:50:45 (2116054): called boinc_finish(0)

</stderr_txt>
]]>

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