Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:43:26 (4030175): wrapper (7.7.26015): starting
16:43:26 (4030175): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 16:43:26] Arguments: --nthreads 8
[2025-07-27 16:43:26] Threads: 8
[2025-07-27 16:43:26] Checking for CVMFS
[2025-07-27 16:43:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:43:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:43:26] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:43:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:43:26] 2.13.1.0 679170 14635 197616 148823 3 260 39059411 40960001 13466 16776704 0 38651788 99.924 18972580 47340 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 16:43:26] CVMFS is ok
[2025-07-27 16:43:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:43:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:43:26] Further information can be found at the LHC@home message board.
[2025-07-27 16:43:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:43:26] Checking for apptainer binary...
[2025-07-27 16:43:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:43:26] Running /usr/bin/apptainer --version
[2025-07-27 16:43:26] apptainer version 1.4.1-1.el9
[2025-07-27 16:43:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:43:27] c-212-10.aglt2.org
[2025-07-27 16:43:27] apptainer works
[2025-07-27 16:43:27] Set ATHENA_PROC_NUMBER=8
[2025-07-27 16:43:27] Set ATHENA_CORE_NUMBER=8
[2025-07-27 16:43:27] Starting ATLAS job with PandaID=6747500043
[2025-07-27 16:43:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:16:46]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:16:46]  protocol_id=None
[2025-07-27 18:16:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:16:46]  replicas=None
[2025-07-27 18:16:46]  scope=mc23_13p6TeV
[2025-07-27 18:16:46]  status=None
[2025-07-27 18:16:46]  status_code=0
[2025-07-27 18:16:46]  storage_token=
[2025-07-27 18:16:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747500043/log.45743349._051415.job.log.tgz.1
[2025-07-27 18:16:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/8e/log.45743349._051415.job.log.tgz.1
[2025-07-27 18:16:46]  workdir=None
[2025-07-27 18:16:46] ]
[2025-07-27 18:16:46] 2025-07-27 22:16:07,443 | INFO     | transferring file log.45743349._051415.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747500043/log.45743349._051415.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 18:16:46] 2025-07-27 22:16:07,443 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747500043/log.45743349._051415.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._051415.job
[2025-07-27 18:16:46] 2025-07-27 22:16:07,466 | INFO     | adding to output.list: log.45743349._051415.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/8e/log.45743349._051415.job.log.tg
[2025-07-27 18:16:46] 2025-07-27 22:16:07,467 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:16:46] 2025-07-27 22:16:07,467 | INFO     | summary of transferred files:
[2025-07-27 18:16:46] 2025-07-27 22:16:07,467 | INFO     |  -- lfn=log.45743349._051415.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:16:46] 2025-07-27 22:16:07,467 | INFO     | stage-out finished correctly
[2025-07-27 18:16:46] 2025-07-27 22:16:07,550 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:16:46] 2025-07-27 22:16:07,744 | INFO     | job 6747500043 has state=finished
[2025-07-27 18:16:46] 2025-07-27 22:16:07,745 | INFO     | preparing for final server update for job 6747500043 in state='finished'
[2025-07-27 18:16:46] 2025-07-27 22:16:07,745 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:16:46] 2025-07-27 22:16:07,745 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:16:46] 2025-07-27 22:16:07,747 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:16:46] 2025-07-27 22:16:07,747 | INFO     | job 6747500043 has finished - writing final server update
[2025-07-27 18:16:46] 2025-07-27 22:16:07,747 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:16:46] 2025-07-27 22:16:07,748 | INFO     | executing command: lscpu
[2025-07-27 18:16:46] 2025-07-27 22:16:07,814 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:16:46] 2025-07-27 22:16:08,225 | INFO     | monitor loop #407: job 0:6747500043 is in state 'finished'
[2025-07-27 18:16:46] 2025-07-27 22:16:08,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:16:46] 2025-07-27 22:16:10,729 | INFO     | monitor loop #408: job 0:6747500043 is in state 'finished'
[2025-07-27 18:16:46] 2025-07-27 22:16:10,729 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:16:46] 2025-07-27 22:16:11,318 | INFO     | PID=4033766 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:16:46] 2025-07-27 22:16:11,318 | INFO     | .. there are 15 such processes running
[2025-07-27 18:16:46] 2025-07-27 22:16:13,189 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:16:46] 2025-07-27 22:16:13,196 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2965.3978645833326
[2025-07-27 18:16:46] 2025-07-27 22:16:13,211 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747500043/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:16:46] 2025-07-27 22:16:13,212 | INFO     | extracted standard info from prmon json
[2025-07-27 18:16:46] 2025-07-27 22:16:13,212 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:16:46] 2025-07-27 22:16:13,213 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:16:46] 2025-07-27 22:16:13,213 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:16:46] 2025-07-27 22:16:13,213 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:16:46] 2025-07-27 22:16:13,215 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:16:46] 2025-07-27 22:16:13,216 | INFO     | sum of square deviations: 183761585.0
[2025-07-27 18:16:46] 2025-07-27 22:16:13,216 | INFO     | sum of deviations: -8334241235.5
[2025-07-27 18:16:46] 2025-07-27 22:16:13,216 | INFO     | mean x: 1753651886.5
[2025-07-27 18:16:46] 2025-07-27 22:16:13,216 | INFO     | mean y: 2595898.0595238097
[2025-07-27 18:16:46] 2025-07-27 22:16:13,216 | INFO     | -- intersect: 79536943978.376
[2025-07-27 18:16:46] 2025-07-27 22:16:13,216 | INFO     | intersect: 79536943978.376
[2025-07-27 18:16:46] 2025-07-27 22:16:13,217 | INFO     | chi2: 0.04032469872828882
[2025-07-27 18:16:46] 2025-07-27 22:16:13,217 | INFO     | -- intersect: 79536943978.376
[2025-07-27 18:16:46] 2025-07-27 22:16:13,217 | INFO     | current memory leak: -45.35 B/s (using 84 data points, chi2=0.04)
[2025-07-27 18:16:46] 2025-07-27 22:16:13,217 | INFO     | could have reported an average CPU frequency of 2958 MHz (7 samples)
[2025-07-27 18:16:46] 2025-07-27 22:16:13,217 | INFO     | ..............................
[2025-07-27 18:16:46] 2025-07-27 22:16:13,217 | INFO     | . Timing measurements:
[2025-07-27 18:16:46] 2025-07-27 22:16:13,217 | INFO     | . get job = 0 s
[2025-07-27 18:16:46] 2025-07-27 22:16:13,217 | INFO     | . initial setup = 2 s
[2025-07-27 18:16:46] 2025-07-27 22:16:13,218 | INFO     | . payload setup = 8 s
[2025-07-27 18:16:46] 2025-07-27 22:16:13,218 | INFO     | . stage-in = 0 s
[2025-07-27 18:16:46] 2025-07-27 22:16:13,218 | INFO     | . payload execution = 5518 s
[2025-07-27 18:16:46] 2025-07-27 22:16:13,218 | INFO     | . stage-out = 0 s
[2025-07-27 18:16:46] 2025-07-27 22:16:13,218 | INFO     | . log creation = 0 s
[2025-07-27 18:16:46] 2025-07-27 22:16:13,218 | INFO     | ..............................
[2025-07-27 18:16:46] 2025-07-27 22:16:13,302 | INFO     | 
[2025-07-27 18:16:46] 2025-07-27 22:16:13,302 | INFO     | job summary report
[2025-07-27 18:16:46] 2025-07-27 22:16:13,302 | INFO     | --------------------------------------------------
[2025-07-27 18:16:46] 2025-07-27 22:16:13,302 | INFO     | PanDA job id: 6747500043
[2025-07-27 18:16:46] 2025-07-27 22:16:13,302 | INFO     | task id: 45743349
[2025-07-27 18:16:46] 2025-07-27 22:16:13,302 | INFO     | errors: (none)
[2025-07-27 18:16:46] 2025-07-27 22:16:13,302 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:16:46] 2025-07-27 22:16:13,302 | INFO     | pilot state: finished 
[2025-07-27 18:16:46] 2025-07-27 22:16:13,302 | INFO     | transexitcode: 0
[2025-07-27 18:16:46] 2025-07-27 22:16:13,302 | INFO     | exeerrorcode: 0
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | exeerrordiag: 
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | exitcode: 0
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | exitmsg: OK
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | cpuconsumptiontime: 40775 s
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | nevents: 400
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | neventsw: 0
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | pid: 4040202
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | pgrp: 4040202
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | corecount: 8
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | event service: False
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | sizes: {0: 2396596, 1: 2397452, 6: 2397714, 12: 2397742, 5530: 2424200, 5531: 2433381, 5532: 2433381, 5537: 2433575}
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | --------------------------------------------------
[2025-07-27 18:16:46] 2025-07-27 22:16:13,303 | INFO     | 
[2025-07-27 18:16:46] 2025-07-27 22:16:13,304 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 18:16:46] 2025-07-27 22:16:13,332 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,332 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,333 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,333 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,333 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,333 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,333 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,333 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,333 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,333 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,333 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,333 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,334 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,334 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,334 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,334 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,334 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,334 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:16:46] 2025-07-27 22:16:13,334 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,334 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:16:46] 2025-07-27 22:16:13,334 | INFO     | job 6747500043 has completed (purged errors)
[2025-07-27 18:16:46] 2025-07-27 22:16:13,334 | INFO     | overall cleanup function is called
[2025-07-27 18:16:46] 2025-07-27 22:16:14,344 | INFO     | --- collectZombieJob: --- 10, [4040202]
[2025-07-27 18:16:46] 2025-07-27 22:16:14,344 | INFO     | zombie collector waiting for pid 4040202
[2025-07-27 18:16:46] 2025-07-27 22:16:14,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:16:46] 2025-07-27 22:16:14,344 | INFO     | collected zombie processes
[2025-07-27 18:16:46] 2025-07-27 22:16:14,345 | INFO     | will attempt to kill all subprocesses of pid=4040202
[2025-07-27 18:16:46] 2025-07-27 22:16:14,700 | INFO     | process IDs to be killed: [4040202] (in reverse order)
[2025-07-27 18:16:46] 2025-07-27 22:16:14,817 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:16:46] 2025-07-27 22:16:14,817 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:16:46] 2025-07-27 22:16:14,833 | INFO     | did not find any defunct processes belonging to 4040202
[2025-07-27 18:16:46] 2025-07-27 22:16:14,850 | INFO     | did not find any defunct processes belonging to 4040202
[2025-07-27 18:16:46] 2025-07-27 22:16:14,851 | INFO     | ready for new job
[2025-07-27 18:16:46] 2025-07-27 22:16:14,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:16:46] 2025-07-27 22:16:14,854 | INFO     | ***************************************
[2025-07-27 18:16:46] 2025-07-27 22:16:14,854 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:16:46] 2025-07-27 22:16:14,854 | INFO     | ***************************************
[2025-07-27 18:16:46] 2025-07-27 22:16:14,854 | INFO     | 
[2025-07-27 18:16:46] 2025-07-27 22:16:14,861 | INFO     | architecture information:
[2025-07-27 18:16:46] 2025-07-27 22:16:14,861 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:16:46] 2025-07-27 22:16:14,881 | INFO     | cat /etc/os-release:
[2025-07-27 18:16:46] NAME="CentOS Linux"
[2025-07-27 18:16:46] VERSION="7 (Core)"
[2025-07-27 18:16:46] ID="centos"
[2025-07-27 18:16:46] ID_LIKE="rhel fedora"
[2025-07-27 18:16:46] VERSION_ID="7"
[2025-07-27 18:16:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:16:46] ANSI_COLOR="0;31"
[2025-07-27 18:16:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:16:46] HOME_URL="https://www.centos.org/"
[2025-07-27 18:16:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:16:46] 
[2025-07-27 18:16:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:16:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:16:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:16:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:16:46] 
[2025-07-27 18:16:46] 2025-07-27 22:16:14,882 | INFO     | ***************************************
[2025-07-27 18:16:46] 2025-07-27 22:16:15,385 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 18:16:46] 2025-07-27 22:16:15,411 | INFO     | sufficient remaining disk space (128866844672 B)
[2025-07-27 18:16:46] 2025-07-27 22:16:15,412 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:16:46] 2025-07-27 22:16:15,412 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:16:46] 2025-07-27 22:16:15,412 | INFO     | update_server=False
[2025-07-27 18:16:46] 2025-07-27 22:16:15,412 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:16:46] 2025-07-27 22:16:15,561 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:16:46] 2025-07-27 22:16:15,693 | INFO     | all job control threads have been joined
[2025-07-27 18:16:46] 2025-07-27 22:16:15,743 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 18:16:46] 2025-07-27 22:16:15,743 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 18:16:46] 2025-07-27 22:16:15,743 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:16:46] 2025-07-27 22:16:15,743 | INFO     | will abort loop
[2025-07-27 18:16:46] 2025-07-27 22:16:15,985 | INFO     | all data control threads have been joined
[2025-07-27 18:16:46] 2025-07-27 22:16:16,082 | INFO     | all payload control threads have been joined
[2025-07-27 18:16:46] 2025-07-27 22:16:16,417 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:16,665 | INFO     | [job] validate thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:16,698 | INFO     | [job] control thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:16,745 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:16,749 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:16,834 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:16,845 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:16,985 | INFO     | [data] control thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:17,062 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:17,087 | INFO     | [payload] control thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:17,426 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:17,567 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:17,622 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:18,150 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:16:46] 2025-07-27 22:16:18,310 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:16:46] 2025-07-27 22:16:19,316 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:22,159 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:26,244 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:16:46] 2025-07-27 22:16:27,245 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:16:46] 2025-07-27 22:16:27,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407447836480)>', '<ExcThread(monitor, started 140406926841600)>']
[2025-07-27 18:16:46] 2025-07-27 22:16:32,550 | INFO     | all workflow threads have been joined
[2025-07-27 18:16:46] 2025-07-27 22:16:32,550 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:16:46] 2025-07-27 22:16:32,551 | INFO     | traces error code: 0
[2025-07-27 18:16:46] 2025-07-27 22:16:32,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:16:46] 2025-07-27 22:16:45,780 | INFO     | PID=4033766 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:16:46] 2025-07-27 22:16:45,781 | INFO     | .. there are 15 such processes running
[2025-07-27 18:16:46] 2025-07-27 22:16:45,781 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:16:46] 2025-07-27 22:16:45,781 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:16:46] 2025-07-27 22:16:45,781 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:16:46] 2025-07-27 22:16:45,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:16:46] 2025-07-27 22:16:45,781 | INFO     | [monitor] control thread has ended
[2025-07-27 18:16:46] 2025-07-27 22:16:45,961 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:16:46] 2025-07-27 22:16:45,966 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:16:46] 2025-07-27 22:16:45,968 [wrapper] pilotpid: 4033766
[2025-07-27 18:16:46] 2025-07-27 22:16:45,971 [wrapper] Pilot exit status: 0
[2025-07-27 18:16:46] 2025-07-27 22:16:45,988 [wrapper] pandaids: 6747500043
[2025-07-27 18:16:46] 2025-07-27 22:16:46,082 [wrapper] cleanup supervisor_pilot   31522 4033767
[2025-07-27 18:16:46] 2025-07-27 22:16:46,087 [wrapper] Test setup, not cleaning
[2025-07-27 18:16:46] 2025-07-27 22:16:46,091 [wrapper] apfmon messages muted
[2025-07-27 18:16:46] 2025-07-27 22:16:46,094 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:16:46] 2025-07-27 22:16:46,099 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:16:46]  *** Error codes and diagnostics ***
[2025-07-27 18:16:46]     "exeErrorCode": 0,
[2025-07-27 18:16:46]     "exeErrorDiag": "",
[2025-07-27 18:16:46]     "pilotErrorCode": 0,
[2025-07-27 18:16:46]     "pilotErrorDiag": "",
[2025-07-27 18:16:46]  *** Listing of results directory ***
[2025-07-27 18:16:46] total 440144
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:21 queuedata.json
[2025-07-27 18:16:46] -rwx------. 1 boincer umatlas     36292 Jul 27 11:24 runpilot2-wrapper.sh
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:16:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:43 run_atlas
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:43 job.xml
[2025-07-27 18:16:46] -rw-r--r--. 2 boincer umatlas 230954411 Jul 27 16:43 EVNT.45743347._002753.pool.root.1
[2025-07-27 18:16:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:43 start_atlas.sh
[2025-07-27 18:16:46] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:43 shared
[2025-07-27 18:16:46] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 16:43 input.tar.gz
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:43 boinc_lockfile
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 16:43 pandaJob.out
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas    980109 Jul 27 16:43 agis_schedconf.cvmfs.json
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:43 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:16:46] drwx------. 4 boincer umatlas      4096 Jul 27 16:43 pilot3
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas      6944 Jul 27 18:13 init_data.xml
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas 214170242 Jul 27 18:15 HITS.45743349._051415.pool.root.1
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas       529 Jul 27 18:15 boinc_task_state.xml
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas        95 Jul 27 18:15 pilot_heartbeat.json
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas      1028 Jul 27 18:16 memory_monitor_summary.json
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas    318480 Jul 27 18:16 log.45743349._051415.job.log.tgz.1
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas      7771 Jul 27 18:16 heartbeat.json
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:16 boinc_mmap_file
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas        27 Jul 27 18:16 wrapper_checkpoint.txt
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas       823 Jul 27 18:16 pilotlog.txt
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas    536206 Jul 27 18:16 log.45743349._051415.job.log.1
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas       357 Jul 27 18:16 output.list
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:16 runtime_log
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas    870400 Jul 27 18:16 result.tar.gz
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 18:16 runtime_log.err
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas       651 Jul 27 18:16 9RsKDmhPI07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMeVLDm0jvETn.diag
[2025-07-27 18:16:46] -rw-r--r--. 1 boincer umatlas     21862 Jul 27 18:16 stderr.txt
[2025-07-27 18:16:46] HITS file was successfully produced:
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas 214170242 Jul 27 18:15 shared/HITS.pool.root.1
[2025-07-27 18:16:46]  *** Contents of shared directory: ***
[2025-07-27 18:16:46] total 436104
[2025-07-27 18:16:46] -rw-r--r--. 2 boincer umatlas 230954411 Jul 27 16:43 ATLAS.root_0
[2025-07-27 18:16:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:43 start_atlas.sh
[2025-07-27 18:16:46] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 16:43 input.tar.gz
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas 214170242 Jul 27 18:15 HITS.pool.root.1
[2025-07-27 18:16:46] -rw-------. 1 boincer umatlas    870400 Jul 27 18:16 result.tar.gz
18:16:48 (4030175): run_atlas exited; CPU time 40903.392041
18:16:48 (4030175): called boinc_finish(0)

</stderr_txt>
]]>

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