Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:59:23 (3429867): wrapper (7.7.26015): starting
17:59:23 (3429867): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 17:59:23] Arguments: --nthreads 12
[2025-07-27 17:59:23] Threads: 12
[2025-07-27 17:59:23] Checking for CVMFS
[2025-07-27 17:59:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:59:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:59:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:59:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:59:24] 2.12.6.0 1267368 18932 335216 148825 3 318 24713680 32935842 8212 16776704 0 34925372 99.695 66226278 29463 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 17:59:24] CVMFS is ok
[2025-07-27 17:59:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:59:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:59:24] Further information can be found at the LHC@home message board.
[2025-07-27 17:59:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:59:24] Checking for apptainer binary...
[2025-07-27 17:59:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:59:24] Running /usr/bin/apptainer --version
[2025-07-27 17:59:24] apptainer version 1.4.1-1.el9
[2025-07-27 17:59:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:59:24] c6-2-29-3.aglt2.org
[2025-07-27 17:59:24] apptainer works
[2025-07-27 17:59:24] Set ATHENA_PROC_NUMBER=12
[2025-07-27 17:59:24] Set ATHENA_CORE_NUMBER=12
[2025-07-27 17:59:24] Starting ATLAS job with PandaID=6747500505
[2025-07-27 17:59:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:10:28]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:10:28]  is_tar=False
[2025-07-27 19:10:28]  lfn=log.45743349._051711.job.log.tgz.1
[2025-07-27 19:10:28]  mtime=0
[2025-07-27 19:10:28]  protocol_id=None
[2025-07-27 19:10:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 19:10:28]  replicas=None
[2025-07-27 19:10:28]  scope=mc23_13p6TeV
[2025-07-27 19:10:28]  status=None
[2025-07-27 19:10:28]  status_code=0
[2025-07-27 19:10:28]  storage_token=
[2025-07-27 19:10:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747500505/log.45743349._051711.job.log.tgz.1
[2025-07-27 19:10:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/b9/log.45743349._051711.job.log.tgz.1
[2025-07-27 19:10:28]  workdir=None
[2025-07-27 19:10:28] ]
[2025-07-27 19:10:28] 2025-07-27 23:09:45,988 | INFO     | transferring file log.45743349._051711.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747500505/log.45743349._051711.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:10:28] 2025-07-27 23:09:45,988 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747500505/log.45743349._051711.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._051711.job
[2025-07-27 19:10:28] 2025-07-27 23:09:46,008 | INFO     | adding to output.list: log.45743349._051711.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/b9/log.45743349._051711.job.log.tg
[2025-07-27 19:10:28] 2025-07-27 23:09:46,009 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:10:28] 2025-07-27 23:09:46,009 | INFO     | summary of transferred files:
[2025-07-27 19:10:28] 2025-07-27 23:09:46,009 | INFO     |  -- lfn=log.45743349._051711.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:10:28] 2025-07-27 23:09:46,009 | INFO     | stage-out finished correctly
[2025-07-27 19:10:28] 2025-07-27 23:09:48,006 | INFO     | monitor loop #312: job 0:6747500505 is in state 'finished'
[2025-07-27 19:10:28] 2025-07-27 23:09:48,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:10:28] 2025-07-27 23:09:49,388 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:10:28] 2025-07-27 23:09:49,482 | INFO     | job 6747500505 has state=finished
[2025-07-27 19:10:28] 2025-07-27 23:09:49,483 | INFO     | preparing for final server update for job 6747500505 in state='finished'
[2025-07-27 19:10:28] 2025-07-27 23:09:49,483 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:10:28] 2025-07-27 23:09:49,483 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:10:28] 2025-07-27 23:09:49,483 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:10:28] 2025-07-27 23:09:49,484 | INFO     | job 6747500505 has finished - writing final server update
[2025-07-27 19:10:28] 2025-07-27 23:09:49,484 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:10:28] 2025-07-27 23:09:49,485 | INFO     | executing command: lscpu
[2025-07-27 19:10:28] 2025-07-27 23:09:49,547 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:10:28] 2025-07-27 23:09:50,510 | INFO     | monitor loop #313: job 0:6747500505 is in state 'finished'
[2025-07-27 19:10:28] 2025-07-27 23:09:50,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:10:28] 2025-07-27 23:09:53,014 | INFO     | monitor loop #314: job 0:6747500505 is in state 'finished'
[2025-07-27 19:10:28] 2025-07-27 23:09:53,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:10:28] 2025-07-27 23:09:54,562 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 19:10:28] 2025-07-27 23:09:54,565 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2629.6605714285715
[2025-07-27 19:10:28] 2025-07-27 23:09:54,575 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747500505/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:10:28] 2025-07-27 23:09:54,576 | INFO     | extracted standard info from prmon json
[2025-07-27 19:10:28] 2025-07-27 23:09:54,576 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:10:28] 2025-07-27 23:09:54,576 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:10:28] 2025-07-27 23:09:54,577 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:10:28] 2025-07-27 23:09:54,577 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:10:28] 2025-07-27 23:09:54,578 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:10:28] 2025-07-27 23:09:54,579 | INFO     | sum of square deviations: 73882315.5
[2025-07-27 19:10:28] 2025-07-27 23:09:54,579 | INFO     | sum of deviations: 27136521.000000086
[2025-07-27 19:10:28] 2025-07-27 23:09:54,579 | INFO     | mean x: 1753655762.5
[2025-07-27 19:10:28] 2025-07-27 23:09:54,579 | INFO     | mean y: 2376756.0322580645
[2025-07-27 19:10:28] 2025-07-27 23:09:54,579 | INFO     | -- intersect: -641730241.7492667
[2025-07-27 19:10:28] 2025-07-27 23:09:54,579 | INFO     | intersect: -641730241.7492667
[2025-07-27 19:10:28] 2025-07-27 23:09:54,579 | INFO     | chi2: 0.030950158690991117
[2025-07-27 19:10:28] 2025-07-27 23:09:54,579 | INFO     | -- intersect: -641730241.7492667
[2025-07-27 19:10:28] 2025-07-27 23:09:54,580 | INFO     | current memory leak: 0.37 B/s (using 62 data points, chi2=0.03)
[2025-07-27 19:10:28] 2025-07-27 23:09:54,580 | INFO     | could have reported an average CPU frequency of 2690 MHz (6 samples)
[2025-07-27 19:10:28] 2025-07-27 23:09:54,580 | INFO     | ..............................
[2025-07-27 19:10:28] 2025-07-27 23:09:54,580 | INFO     | . Timing measurements:
[2025-07-27 19:10:28] 2025-07-27 23:09:54,581 | INFO     | . get job = 0 s
[2025-07-27 19:10:28] 2025-07-27 23:09:54,581 | INFO     | . initial setup = 2 s
[2025-07-27 19:10:28] 2025-07-27 23:09:54,581 | INFO     | . payload setup = 5 s
[2025-07-27 19:10:28] 2025-07-27 23:09:54,581 | INFO     | . stage-in = 0 s
[2025-07-27 19:10:28] 2025-07-27 23:09:54,581 | INFO     | . payload execution = 4187 s
[2025-07-27 19:10:28] 2025-07-27 23:09:54,581 | INFO     | . stage-out = 0 s
[2025-07-27 19:10:28] 2025-07-27 23:09:54,581 | INFO     | . log creation = 0 s
[2025-07-27 19:10:28] 2025-07-27 23:09:54,581 | INFO     | ..............................
[2025-07-27 19:10:28] 2025-07-27 23:09:54,664 | INFO     | 
[2025-07-27 19:10:28] 2025-07-27 23:09:54,665 | INFO     | job summary report
[2025-07-27 19:10:28] 2025-07-27 23:09:54,665 | INFO     | --------------------------------------------------
[2025-07-27 19:10:28] 2025-07-27 23:09:54,665 | INFO     | PanDA job id: 6747500505
[2025-07-27 19:10:28] 2025-07-27 23:09:54,665 | INFO     | task id: 45743349
[2025-07-27 19:10:28] 2025-07-27 23:09:54,665 | INFO     | errors: (none)
[2025-07-27 19:10:28] 2025-07-27 23:09:54,665 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:10:28] 2025-07-27 23:09:54,665 | INFO     | pilot state: finished 
[2025-07-27 19:10:28] 2025-07-27 23:09:54,665 | INFO     | transexitcode: 0
[2025-07-27 19:10:28] 2025-07-27 23:09:54,665 | INFO     | exeerrorcode: 0
[2025-07-27 19:10:28] 2025-07-27 23:09:54,665 | INFO     | exeerrordiag: 
[2025-07-27 19:10:28] 2025-07-27 23:09:54,665 | INFO     | exitcode: 0
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | exitmsg: OK
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | cpuconsumptiontime: 45030 s
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | nevents: 400
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | neventsw: 0
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | pid: 3440572
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | pgrp: 3440572
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | corecount: 12
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | event service: False
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | sizes: {0: 2397475, 1: 2397475, 4: 2397765, 11: 2397793, 4196: 2423809, 4197: 2423808, 4198: 2432990, 4202: 2433046, 4207: 2433240}
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | --------------------------------------------------
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | 
[2025-07-27 19:10:28] 2025-07-27 23:09:54,666 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 19:10:28] 2025-07-27 23:09:54,691 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,692 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,692 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,692 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,692 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,692 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,692 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,692 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,692 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,692 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,693 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,693 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,693 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,693 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:10:28] 2025-07-27 23:09:54,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,694 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:10:28] 2025-07-27 23:09:54,694 | INFO     | job 6747500505 has completed (purged errors)
[2025-07-27 19:10:28] 2025-07-27 23:09:54,694 | INFO     | overall cleanup function is called
[2025-07-27 19:10:28] 2025-07-27 23:09:55,703 | INFO     | --- collectZombieJob: --- 10, [3440572]
[2025-07-27 19:10:28] 2025-07-27 23:09:55,704 | INFO     | zombie collector waiting for pid 3440572
[2025-07-27 19:10:28] 2025-07-27 23:09:55,704 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:10:28] 2025-07-27 23:09:55,704 | INFO     | collected zombie processes
[2025-07-27 19:10:28] 2025-07-27 23:09:55,704 | INFO     | will attempt to kill all subprocesses of pid=3440572
[2025-07-27 19:10:28] 2025-07-27 23:09:55,949 | INFO     | process IDs to be killed: [3440572] (in reverse order)
[2025-07-27 19:10:28] 2025-07-27 23:09:56,058 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:10:28] 2025-07-27 23:09:56,059 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:10:28] 2025-07-27 23:09:56,070 | INFO     | did not find any defunct processes belonging to 3440572
[2025-07-27 19:10:28] 2025-07-27 23:09:56,082 | INFO     | did not find any defunct processes belonging to 3440572
[2025-07-27 19:10:28] 2025-07-27 23:09:56,082 | INFO     | ready for new job
[2025-07-27 19:10:28] 2025-07-27 23:09:56,083 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:10:28] 2025-07-27 23:09:56,084 | INFO     | ***************************************
[2025-07-27 19:10:28] 2025-07-27 23:09:56,085 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:10:28] 2025-07-27 23:09:56,085 | INFO     | ***************************************
[2025-07-27 19:10:28] 2025-07-27 23:09:56,085 | INFO     | 
[2025-07-27 19:10:28] 2025-07-27 23:09:56,101 | INFO     | architecture information:
[2025-07-27 19:10:28] 2025-07-27 23:09:56,102 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:10:28] 2025-07-27 23:09:56,117 | INFO     | cat /etc/os-release:
[2025-07-27 19:10:28] NAME="CentOS Linux"
[2025-07-27 19:10:28] VERSION="7 (Core)"
[2025-07-27 19:10:28] ID="centos"
[2025-07-27 19:10:28] ID_LIKE="rhel fedora"
[2025-07-27 19:10:28] VERSION_ID="7"
[2025-07-27 19:10:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:10:28] ANSI_COLOR="0;31"
[2025-07-27 19:10:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:10:28] HOME_URL="https://www.centos.org/"
[2025-07-27 19:10:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:10:28] 
[2025-07-27 19:10:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:10:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:10:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:10:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:10:28] 
[2025-07-27 19:10:28] 2025-07-27 23:09:56,118 | INFO     | ***************************************
[2025-07-27 19:10:28] 2025-07-27 23:09:56,620 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 19:10:28] 2025-07-27 23:09:56,640 | INFO     | sufficient remaining disk space (76278661120 B)
[2025-07-27 19:10:28] 2025-07-27 23:09:56,641 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:10:28] 2025-07-27 23:09:56,641 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:10:28] 2025-07-27 23:09:56,641 | INFO     | update_server=False
[2025-07-27 19:10:28] 2025-07-27 23:09:56,641 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:10:28] 2025-07-27 23:09:56,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:10:28] 2025-07-27 23:09:56,641 | INFO     | aborting loop
[2025-07-27 19:10:28] 2025-07-27 23:09:56,642 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:10:28] 2025-07-27 23:09:56,642 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:10:28] 2025-07-27 23:09:57,244 | INFO     | all data control threads have been joined
[2025-07-27 19:10:28] 2025-07-27 23:09:57,350 | INFO     | all job control threads have been joined
[2025-07-27 19:10:28] 2025-07-27 23:09:57,646 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:57,647 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:57,648 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:57,760 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:57,813 | INFO     | [job] validate thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:58,009 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:58,086 | INFO     | all payload control threads have been joined
[2025-07-27 19:10:28] 2025-07-27 23:09:58,132 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:58,249 | INFO     | [data] control thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:58,314 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:58,333 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:58,355 | INFO     | [job] control thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:58,647 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:58,834 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:59,091 | INFO     | [payload] control thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:59,113 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:09:59,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:10:28] 2025-07-27 23:10:03,997 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:10:28] 2025-07-27 23:10:05,946 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405549668160)>', '<ExcThread(monitor, started 140404687103744)>']
[2025-07-27 19:10:28] 2025-07-27 23:10:10,971 | INFO     | all workflow threads have been joined
[2025-07-27 19:10:28] 2025-07-27 23:10:10,971 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:10:28] 2025-07-27 23:10:10,972 | INFO     | traces error code: 0
[2025-07-27 19:10:28] 2025-07-27 23:10:10,972 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:10:28] 2025-07-27 23:10:27,849 | INFO     | PID=3433482 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:10:28] 2025-07-27 23:10:27,851 | INFO     | .. there are 9 such processes running
[2025-07-27 19:10:28] 2025-07-27 23:10:27,854 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:10:28] 2025-07-27 23:10:27,854 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:10:28] 2025-07-27 23:10:27,854 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:10:28] 2025-07-27 23:10:27,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:10:28] 2025-07-27 23:10:27,854 | INFO     | [monitor] control thread has ended
[2025-07-27 19:10:28] 2025-07-27 23:10:28,058 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:10:28] 2025-07-27 23:10:28,061 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:10:28] 2025-07-27 23:10:28,065 [wrapper] pilotpid: 3433482
[2025-07-27 19:10:28] 2025-07-27 23:10:28,069 [wrapper] Pilot exit status: 0
[2025-07-27 19:10:28] 2025-07-27 23:10:28,081 [wrapper] pandaids: 6747500505
[2025-07-27 19:10:28] 2025-07-27 23:10:28,146 [wrapper] cleanup supervisor_pilot 3650619 3433483
[2025-07-27 19:10:28] 2025-07-27 23:10:28,149 [wrapper] Test setup, not cleaning
[2025-07-27 19:10:28] 2025-07-27 23:10:28,153 [wrapper] apfmon messages muted
[2025-07-27 19:10:28] 2025-07-27 23:10:28,156 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:10:28] 2025-07-27 23:10:28,159 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:10:28]  *** Error codes and diagnostics ***
[2025-07-27 19:10:28]     "exeErrorCode": 0,
[2025-07-27 19:10:28]     "exeErrorDiag": "",
[2025-07-27 19:10:28]     "pilotErrorCode": 0,
[2025-07-27 19:10:28]     "pilotErrorDiag": "",
[2025-07-27 19:10:28]  *** Listing of results directory ***
[2025-07-27 19:10:28] total 438608
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:35 queuedata.json
[2025-07-27 19:10:28] -rwx------. 1 boincer umatlas     36292 Jul 27 11:36 runpilot2-wrapper.sh
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:10:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:59 run_atlas
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:59 job.xml
[2025-07-27 19:10:28] -rw-r--r--. 2 boincer umatlas 231200448 Jul 27 17:59 EVNT.45743347._002765.pool.root.1
[2025-07-27 19:10:28] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:59 shared
[2025-07-27 19:10:28] -rw-r--r--. 2 boincer umatlas    542889 Jul 27 17:59 input.tar.gz
[2025-07-27 19:10:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:59 start_atlas.sh
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:59 boinc_lockfile
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 17:59 pandaJob.out
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas    980117 Jul 27 17:59 agis_schedconf.cvmfs.json
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:59 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:10:28] drwx------. 4 boincer umatlas      4096 Jul 27 17:59 pilot3
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 19:02 init_data.xml
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas 212481961 Jul 27 19:09 HITS.45743349._051711.pool.root.1
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:09 boinc_task_state.xml
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas      1036 Jul 27 19:09 memory_monitor_summary.json
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas    363356 Jul 27 19:09 log.45743349._051711.job.log.tgz.1
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas      7819 Jul 27 19:09 heartbeat.json
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:10 boinc_mmap_file
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas        95 Jul 27 19:10 pilot_heartbeat.json
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas       822 Jul 27 19:10 pilotlog.txt
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:10 wrapper_checkpoint.txt
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas    424935 Jul 27 19:10 log.45743349._051711.job.log.1
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas       357 Jul 27 19:10 output.list
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:10 runtime_log
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas    808960 Jul 27 19:10 result.tar.gz
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 19:10 runtime_log.err
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas       656 Jul 27 19:10 hrsLDmbbI07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkjVLDmz0apVo.diag
[2025-07-27 19:10:28] -rw-r--r--. 1 boincer umatlas     21635 Jul 27 19:10 stderr.txt
[2025-07-27 19:10:28] HITS file was successfully produced:
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas 212481961 Jul 27 19:09 shared/HITS.pool.root.1
[2025-07-27 19:10:28]  *** Contents of shared directory: ***
[2025-07-27 19:10:28] total 434632
[2025-07-27 19:10:28] -rw-r--r--. 2 boincer umatlas 231200448 Jul 27 17:59 ATLAS.root_0
[2025-07-27 19:10:28] -rw-r--r--. 2 boincer umatlas    542889 Jul 27 17:59 input.tar.gz
[2025-07-27 19:10:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:59 start_atlas.sh
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas 212481961 Jul 27 19:09 HITS.pool.root.1
[2025-07-27 19:10:28] -rw-------. 1 boincer umatlas    808960 Jul 27 19:10 result.tar.gz
19:10:30 (3429867): run_atlas exited; CPU time 45076.796712
19:10:30 (3429867): called boinc_finish(0)

</stderr_txt>
]]>

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