Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:37:46 (850): wrapper (7.7.26015): starting
16:37:46 (850): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:37:46] Arguments: --nthreads 12
[2025-07-27 16:37:46] Threads: 12
[2025-07-27 16:37:46] Checking for CVMFS
[2025-07-27 16:37:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:37:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:37:47] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:37:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:37:47] 2.11.2.0 2913 112491 95960 148823 2 59 15447072 20275201 1 130560 0 39204653 99.972 9827127 10831 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 16:37:47] CVMFS is ok
[2025-07-27 16:37:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:37:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:37:47] Further information can be found at the LHC@home message board.
[2025-07-27 16:37:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:37:47] Checking for apptainer binary...
[2025-07-27 16:37:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:37:47] Running /usr/bin/apptainer --version
[2025-07-27 16:37:47] apptainer version 1.3.2-1.el7
[2025-07-27 16:37:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:37:48] c-205-6.aglt2.org
[2025-07-27 16:37:48] apptainer works
[2025-07-27 16:37:48] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:37:48] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:37:48] Starting ATLAS job with PandaID=6747411246
[2025-07-27 16:37:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:00:43]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:00:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:00:43]  replicas=None
[2025-07-27 18:00:43]  scope=mc23_13p6TeV
[2025-07-27 18:00:43]  status=None
[2025-07-27 18:00:43]  status_code=0
[2025-07-27 18:00:43]  storage_token=
[2025-07-27 18:00:43]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747411246/log.45743349._048483.job.log.tgz.1
[2025-07-27 18:00:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/31/log.45743349._048483.job.log.tgz.1
[2025-07-27 18:00:43]  workdir=None
[2025-07-27 18:00:43] ]
[2025-07-27 18:00:43] 2025-07-27 22:00:01,647 | INFO     | transferring file log.45743349._048483.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747411246/log.45743349._048483.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 18:00:43] 2025-07-27 22:00:01,648 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747411246/log.45743349._048483.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._048483.job
[2025-07-27 18:00:43] 2025-07-27 22:00:01,667 | INFO     | adding to output.list: log.45743349._048483.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/31/log.45743349._048483.job.log.tg
[2025-07-27 18:00:43] 2025-07-27 22:00:01,667 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:00:43] 2025-07-27 22:00:01,667 | INFO     | summary of transferred files:
[2025-07-27 18:00:43] 2025-07-27 22:00:01,667 | INFO     |  -- lfn=log.45743349._048483.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:00:43] 2025-07-27 22:00:01,668 | INFO     | stage-out finished correctly
[2025-07-27 18:00:43] 2025-07-27 22:00:01,943 | INFO     | monitor loop #368: job 0:6747411246 is in state 'finished'
[2025-07-27 18:00:43] 2025-07-27 22:00:01,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:00:43] 2025-07-27 22:00:04,181 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:00:43] 2025-07-27 22:00:04,447 | INFO     | monitor loop #369: job 0:6747411246 is in state 'finished'
[2025-07-27 18:00:43] 2025-07-27 22:00:04,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:00:43] 2025-07-27 22:00:05,059 | INFO     | job 6747411246 has state=finished
[2025-07-27 18:00:43] 2025-07-27 22:00:05,059 | INFO     | preparing for final server update for job 6747411246 in state='finished'
[2025-07-27 18:00:43] 2025-07-27 22:00:05,060 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:00:43] 2025-07-27 22:00:05,060 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:00:43] 2025-07-27 22:00:05,060 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:00:43] 2025-07-27 22:00:05,060 | INFO     | job 6747411246 has finished - writing final server update
[2025-07-27 18:00:43] 2025-07-27 22:00:05,061 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:00:43] 2025-07-27 22:00:05,061 | INFO     | executing command: lscpu
[2025-07-27 18:00:43] 2025-07-27 22:00:05,088 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:00:43] 2025-07-27 22:00:06,557 | INFO     | PID=4635 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 18:00:43] 2025-07-27 22:00:06,950 | INFO     | monitor loop #370: job 0:6747411246 is in state 'finished'
[2025-07-27 18:00:43] 2025-07-27 22:00:06,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:00:43] 2025-07-27 22:00:09,453 | INFO     | monitor loop #371: job 0:6747411246 is in state 'finished'
[2025-07-27 18:00:43] 2025-07-27 22:00:09,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:00:43] 2025-07-27 22:00:09,976 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 18:00:43] 2025-07-27 22:00:09,979 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-07-27 18:00:43] 2025-07-27 22:00:09,981 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747411246/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:00:43] 2025-07-27 22:00:09,981 | INFO     | extracted standard info from prmon json
[2025-07-27 18:00:43] 2025-07-27 22:00:09,981 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:00:43] 2025-07-27 22:00:09,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:00:43] 2025-07-27 22:00:09,982 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:00:43] 2025-07-27 22:00:09,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:00:43] 2025-07-27 22:00:09,984 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:00:43] 2025-07-27 22:00:09,984 | INFO     | sum of square deviations: 125630262.5
[2025-07-27 18:00:43] 2025-07-27 22:00:09,984 | INFO     | sum of deviations: -10153918358.000002
[2025-07-27 18:00:43] 2025-07-27 22:00:09,984 | INFO     | mean x: 1753651243.5
[2025-07-27 18:00:43] 2025-07-27 22:00:09,984 | INFO     | mean y: 2807324.2972972975
[2025-07-27 18:00:43] 2025-07-27 22:00:09,984 | INFO     | -- intersect: 141739608637.6288
[2025-07-27 18:00:43] 2025-07-27 22:00:09,985 | INFO     | intersect: 141739608637.6288
[2025-07-27 18:00:43] 2025-07-27 22:00:09,985 | INFO     | chi2: 0.058457212903190586
[2025-07-27 18:00:43] 2025-07-27 22:00:09,985 | INFO     | -- intersect: 141739608637.6288
[2025-07-27 18:00:43] 2025-07-27 22:00:09,985 | INFO     | current memory leak: -80.82 B/s (using 74 data points, chi2=0.06)
[2025-07-27 18:00:43] 2025-07-27 22:00:09,985 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-07-27 18:00:43] 2025-07-27 22:00:09,985 | INFO     | ..............................
[2025-07-27 18:00:43] 2025-07-27 22:00:09,986 | INFO     | . Timing measurements:
[2025-07-27 18:00:43] 2025-07-27 22:00:09,986 | INFO     | . get job = 0 s
[2025-07-27 18:00:43] 2025-07-27 22:00:09,986 | INFO     | . initial setup = 2 s
[2025-07-27 18:00:43] 2025-07-27 22:00:09,986 | INFO     | . payload setup = 9 s
[2025-07-27 18:00:43] 2025-07-27 22:00:09,986 | INFO     | . stage-in = 0 s
[2025-07-27 18:00:43] 2025-07-27 22:00:09,986 | INFO     | . payload execution = 4889 s
[2025-07-27 18:00:43] 2025-07-27 22:00:09,986 | INFO     | . stage-out = 0 s
[2025-07-27 18:00:43] 2025-07-27 22:00:09,986 | INFO     | . log creation = 0 s
[2025-07-27 18:00:43] 2025-07-27 22:00:09,986 | INFO     | ..............................
[2025-07-27 18:00:43] 2025-07-27 22:00:10,071 | INFO     | 
[2025-07-27 18:00:43] 2025-07-27 22:00:10,071 | INFO     | job summary report
[2025-07-27 18:00:43] 2025-07-27 22:00:10,071 | INFO     | --------------------------------------------------
[2025-07-27 18:00:43] 2025-07-27 22:00:10,071 | INFO     | PanDA job id: 6747411246
[2025-07-27 18:00:43] 2025-07-27 22:00:10,072 | INFO     | task id: 45743349
[2025-07-27 18:00:43] 2025-07-27 22:00:10,072 | INFO     | errors: (none)
[2025-07-27 18:00:43] 2025-07-27 22:00:10,072 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:00:43] 2025-07-27 22:00:10,072 | INFO     | pilot state: finished 
[2025-07-27 18:00:43] 2025-07-27 22:00:10,072 | INFO     | transexitcode: 0
[2025-07-27 18:00:43] 2025-07-27 22:00:10,072 | INFO     | exeerrorcode: 0
[2025-07-27 18:00:43] 2025-07-27 22:00:10,072 | INFO     | exeerrordiag: 
[2025-07-27 18:00:43] 2025-07-27 22:00:10,073 | INFO     | exitcode: 0
[2025-07-27 18:00:43] 2025-07-27 22:00:10,073 | INFO     | exitmsg: OK
[2025-07-27 18:00:43] 2025-07-27 22:00:10,073 | INFO     | cpuconsumptiontime: 53275 s
[2025-07-27 18:00:43] 2025-07-27 22:00:10,073 | INFO     | nevents: 400
[2025-07-27 18:00:43] 2025-07-27 22:00:10,073 | INFO     | neventsw: 0
[2025-07-27 18:00:43] 2025-07-27 22:00:10,073 | INFO     | pid: 11106
[2025-07-27 18:00:43] 2025-07-27 22:00:10,074 | INFO     | pgrp: 11106
[2025-07-27 18:00:43] 2025-07-27 22:00:10,074 | INFO     | corecount: 12
[2025-07-27 18:00:43] 2025-07-27 22:00:10,074 | INFO     | event service: False
[2025-07-27 18:00:43] 2025-07-27 22:00:10,074 | INFO     | sizes: {0: 2397475, 1: 2397475, 5: 2397765, 11: 2397821, 4902: 2424066, 4904: 2433064, 4906: 2433248, 4912: 2433442}
[2025-07-27 18:00:43] 2025-07-27 22:00:10,074 | INFO     | --------------------------------------------------
[2025-07-27 18:00:43] 2025-07-27 22:00:10,074 | INFO     | 
[2025-07-27 18:00:43] 2025-07-27 22:00:10,075 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 18:00:43] 2025-07-27 22:00:10,104 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,104 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,105 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,105 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,105 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,105 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,105 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,105 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,106 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,106 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,106 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,106 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,106 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,106 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,107 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:00:43] 2025-07-27 22:00:10,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,107 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:00:43] 2025-07-27 22:00:10,108 | INFO     | job 6747411246 has completed (purged errors)
[2025-07-27 18:00:43] 2025-07-27 22:00:10,108 | INFO     | overall cleanup function is called
[2025-07-27 18:00:43] 2025-07-27 22:00:11,113 | INFO     | --- collectZombieJob: --- 10, [11106]
[2025-07-27 18:00:43] 2025-07-27 22:00:11,113 | INFO     | zombie collector waiting for pid 11106
[2025-07-27 18:00:43] 2025-07-27 22:00:11,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:00:43] 2025-07-27 22:00:11,113 | INFO     | collected zombie processes
[2025-07-27 18:00:43] 2025-07-27 22:00:11,113 | INFO     | will attempt to kill all subprocesses of pid=11106
[2025-07-27 18:00:43] 2025-07-27 22:00:11,205 | INFO     | process IDs to be killed: [11106] (in reverse order)
[2025-07-27 18:00:43] 2025-07-27 22:00:11,255 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:00:43] 2025-07-27 22:00:11,256 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:00:43] 2025-07-27 22:00:11,259 | INFO     | did not find any defunct processes belonging to 11106
[2025-07-27 18:00:43] 2025-07-27 22:00:11,261 | INFO     | did not find any defunct processes belonging to 11106
[2025-07-27 18:00:43] 2025-07-27 22:00:11,262 | INFO     | ready for new job
[2025-07-27 18:00:43] 2025-07-27 22:00:11,262 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:00:43] 2025-07-27 22:00:11,263 | INFO     | ***************************************
[2025-07-27 18:00:43] 2025-07-27 22:00:11,263 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:00:43] 2025-07-27 22:00:11,263 | INFO     | ***************************************
[2025-07-27 18:00:43] 2025-07-27 22:00:11,263 | INFO     | 
[2025-07-27 18:00:43] 2025-07-27 22:00:11,264 | INFO     | architecture information:
[2025-07-27 18:00:43] 2025-07-27 22:00:11,264 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:00:43] 2025-07-27 22:00:11,280 | INFO     | cat /etc/os-release:
[2025-07-27 18:00:43] NAME="CentOS Linux"
[2025-07-27 18:00:43] VERSION="7 (Core)"
[2025-07-27 18:00:43] ID="centos"
[2025-07-27 18:00:43] ID_LIKE="rhel fedora"
[2025-07-27 18:00:43] VERSION_ID="7"
[2025-07-27 18:00:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:00:43] ANSI_COLOR="0;31"
[2025-07-27 18:00:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:00:43] HOME_URL="https://www.centos.org/"
[2025-07-27 18:00:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:00:43] 
[2025-07-27 18:00:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:00:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:00:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:00:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:00:43] 
[2025-07-27 18:00:43] 2025-07-27 22:00:11,281 | INFO     | ***************************************
[2025-07-27 18:00:43] 2025-07-27 22:00:11,784 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 18:00:43] 2025-07-27 22:00:11,801 | INFO     | sufficient remaining disk space (29514268672 B)
[2025-07-27 18:00:43] 2025-07-27 22:00:11,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:00:43] 2025-07-27 22:00:11,802 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:00:43] 2025-07-27 22:00:11,802 | INFO     | update_server=False
[2025-07-27 18:00:43] 2025-07-27 22:00:11,802 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:00:43] 2025-07-27 22:00:11,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:00:43] 2025-07-27 22:00:11,829 | INFO     | all payload control threads have been joined
[2025-07-27 18:00:43] 2025-07-27 22:00:11,956 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 18:00:43] 2025-07-27 22:00:11,956 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 18:00:43] 2025-07-27 22:00:11,957 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:00:43] 2025-07-27 22:00:11,957 | INFO     | will abort loop
[2025-07-27 18:00:43] 2025-07-27 22:00:12,269 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:00:43] 2025-07-27 22:00:12,663 | INFO     | all data control threads have been joined
[2025-07-27 18:00:43] 2025-07-27 22:00:12,808 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:12,808 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:12,835 | INFO     | [payload] control thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:12,853 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:12,962 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:12,986 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:13,185 | INFO     | all job control threads have been joined
[2025-07-27 18:00:43] 2025-07-27 22:00:13,386 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:13,668 | INFO     | [data] control thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:13,825 | INFO     | [job] validate thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:13,831 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:13,925 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:13,969 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:14,134 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:14,191 | INFO     | [job] control thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:14,274 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:14,773 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:00:43] 2025-07-27 22:00:18,779 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:00:43] 2025-07-27 22:00:18,904 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139927183804224)>', '<ExcThread(monitor, started 139925932467968)>']
[2025-07-27 18:00:43] 2025-07-27 22:00:23,929 | INFO     | all workflow threads have been joined
[2025-07-27 18:00:43] 2025-07-27 22:00:23,930 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:00:43] 2025-07-27 22:00:23,939 | INFO     | traces error code: 0
[2025-07-27 18:00:43] 2025-07-27 22:00:23,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:00:43] 2025-07-27 22:00:42,747 | INFO     | PID=4635 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 18:00:43] 2025-07-27 22:00:42,748 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:00:43] 2025-07-27 22:00:42,748 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:00:43] 2025-07-27 22:00:42,748 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:00:43] 2025-07-27 22:00:42,748 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:00:43] 2025-07-27 22:00:42,748 | INFO     | [monitor] control thread has ended
[2025-07-27 18:00:43] 2025-07-27 22:00:42,837 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:00:43] 2025-07-27 22:00:42,841 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:00:43] 2025-07-27 22:00:42,844 [wrapper] pilotpid: 4635
[2025-07-27 18:00:43] 2025-07-27 22:00:42,848 [wrapper] Pilot exit status: 0
[2025-07-27 18:00:43] 2025-07-27 22:00:42,863 [wrapper] pandaids: 6747411246
[2025-07-27 18:00:43] 2025-07-27 22:00:42,903 [wrapper] cleanup supervisor_pilot 30330 4636
[2025-07-27 18:00:43] 2025-07-27 22:00:42,907 [wrapper] Test setup, not cleaning
[2025-07-27 18:00:43] 2025-07-27 22:00:42,911 [wrapper] apfmon messages muted
[2025-07-27 18:00:43] 2025-07-27 22:00:42,915 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:00:43] 2025-07-27 22:00:42,918 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:00:43]  *** Error codes and diagnostics ***
[2025-07-27 18:00:43]     "exeErrorCode": 0,
[2025-07-27 18:00:43]     "exeErrorDiag": "",
[2025-07-27 18:00:43]     "pilotErrorCode": 0,
[2025-07-27 18:00:43]     "pilotErrorDiag": "",
[2025-07-27 18:00:43]  *** Listing of results directory ***
[2025-07-27 18:00:43] total 353652
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 07:59 pilot3.tar.gz
[2025-07-27 18:00:43] -rwx------ 1 boincer umatlas     36292 Jul 27 08:32 runpilot2-wrapper.sh
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 08:32 queuedata.json
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas       100 Jul 27 16:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:00:43] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 16:37 run_atlas
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas       105 Jul 27 16:37 job.xml
[2025-07-27 18:00:43] -rw-r--r-- 2 boincer umatlas 146700145 Jul 27 16:37 EVNT.45743347._002688.pool.root.1
[2025-07-27 18:00:43] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 16:37 start_atlas.sh
[2025-07-27 18:00:43] drwxrwx--x 2 boincer umatlas      4096 Jul 27 16:37 shared
[2025-07-27 18:00:43] -rw-r--r-- 2 boincer umatlas    542900 Jul 27 16:37 input.tar.gz
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas         0 Jul 27 16:37 boinc_lockfile
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas      2563 Jul 27 16:37 pandaJob.out
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas    980109 Jul 27 16:37 agis_schedconf.cvmfs.json
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas   1593052 Jul 27 16:38 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:00:43] drwx------ 4 boincer umatlas      4096 Jul 27 16:38 pilot3
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas      5867 Jul 27 17:54 init_data.xml
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas 209906408 Jul 27 17:59 HITS.45743349._048483.pool.root.1
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas       529 Jul 27 17:59 boinc_task_state.xml
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas      1049 Jul 27 17:59 memory_monitor_summary.json
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas    361217 Jul 27 18:00 log.45743349._048483.job.log.tgz.1
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas        95 Jul 27 18:00 pilot_heartbeat.json
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas      7850 Jul 27 18:00 heartbeat.json
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 18:00 boinc_mmap_file
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas        27 Jul 27 18:00 wrapper_checkpoint.txt
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas       744 Jul 27 18:00 pilotlog.txt
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas    470627 Jul 27 18:00 log.45743349._048483.job.log.1
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas       357 Jul 27 18:00 output.list
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas       620 Jul 27 18:00 runtime_log
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas    849920 Jul 27 18:00 result.tar.gz
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 18:00 runtime_log.err
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas       658 Jul 27 18:00 P75NDmOjF07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6GVLDmp0a17n.diag
[2025-07-27 18:00:43] -rw-r--r-- 1 boincer umatlas     22018 Jul 27 18:00 stderr.txt
[2025-07-27 18:00:43] HITS file was successfully produced:
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas 209906408 Jul 27 17:59 shared/HITS.pool.root.1
[2025-07-27 18:00:43]  *** Contents of shared directory: ***
[2025-07-27 18:00:43] total 349632
[2025-07-27 18:00:43] -rw-r--r-- 2 boincer umatlas 146700145 Jul 27 16:37 ATLAS.root_0
[2025-07-27 18:00:43] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 16:37 start_atlas.sh
[2025-07-27 18:00:43] -rw-r--r-- 2 boincer umatlas    542900 Jul 27 16:37 input.tar.gz
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas 209906408 Jul 27 17:59 HITS.pool.root.1
[2025-07-27 18:00:43] -rw------- 1 boincer umatlas    849920 Jul 27 18:00 result.tar.gz
18:00:44 (850): run_atlas exited; CPU time 53252.437848
18:00:44 (850): called boinc_finish(0)

</stderr_txt>
]]>

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