Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:30:56 (2397): wrapper (7.7.26015): starting
16:30:56 (2397): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:30:56] Arguments: --nthreads 12
[2025-07-27 16:30:56] Threads: 12
[2025-07-27 16:30:56] Checking for CVMFS
[2025-07-27 16:30:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:30:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:30:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:30:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:30:57] 2.11.2.0 2925 112484 95068 148823 1 58 12431287 20275201 1 130560 0 38681281 99.973 9393543 10357 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 16:30:57] CVMFS is ok
[2025-07-27 16:30:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:30:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:30:57] Further information can be found at the LHC@home message board.
[2025-07-27 16:30:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:30:57] Checking for apptainer binary...
[2025-07-27 16:30:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:30:57] Running /usr/bin/apptainer --version
[2025-07-27 16:30:57] apptainer version 1.3.2-1.el7
[2025-07-27 16:30:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:30:58] c-205-10.aglt2.org
[2025-07-27 16:30:58] apptainer works
[2025-07-27 16:30:58] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:30:58] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:30:58] Starting ATLAS job with PandaID=6747579452
[2025-07-27 16:30:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:56:04]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:56:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:56:04]  replicas=None
[2025-07-27 17:56:04]  scope=mc23_13p6TeV
[2025-07-27 17:56:04]  status=None
[2025-07-27 17:56:04]  status_code=0
[2025-07-27 17:56:04]  storage_token=
[2025-07-27 17:56:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747579452/log.45743349._053638.job.log.tgz.1
[2025-07-27 17:56:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/39/log.45743349._053638.job.log.tgz.1
[2025-07-27 17:56:04]  workdir=None
[2025-07-27 17:56:04] ]
[2025-07-27 17:56:04] 2025-07-27 21:55:24,549 | INFO     | transferring file log.45743349._053638.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747579452/log.45743349._053638.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:56:04] 2025-07-27 21:55:24,549 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747579452/log.45743349._053638.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._053638.job
[2025-07-27 17:56:04] 2025-07-27 21:55:24,572 | INFO     | adding to output.list: log.45743349._053638.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/39/log.45743349._053638.job.log.tg
[2025-07-27 17:56:04] 2025-07-27 21:55:24,573 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:56:04] 2025-07-27 21:55:24,573 | INFO     | summary of transferred files:
[2025-07-27 17:56:04] 2025-07-27 21:55:24,573 | INFO     |  -- lfn=log.45743349._053638.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:56:04] 2025-07-27 21:55:24,574 | INFO     | stage-out finished correctly
[2025-07-27 17:56:04] 2025-07-27 21:55:24,896 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:56:04] 2025-07-27 21:55:27,364 | WARNING  | process 13427 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 17:56:04] 2025-07-27 21:55:27,365 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747579452/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:56:04] 2025-07-27 21:55:27,451 | INFO     | number of running child processes to parent process 13427: 1
[2025-07-27 17:56:04] 2025-07-27 21:55:27,451 | INFO     | maximum number of monitored processes: 6
[2025-07-27 17:56:04] 2025-07-27 21:55:27,879 | INFO     | job 6747579452 has state=finished
[2025-07-27 17:56:04] 2025-07-27 21:55:27,879 | INFO     | preparing for final server update for job 6747579452 in state='finished'
[2025-07-27 17:56:04] 2025-07-27 21:55:27,879 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:56:04] 2025-07-27 21:55:27,880 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:56:04] 2025-07-27 21:55:27,880 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:56:04] 2025-07-27 21:55:27,880 | INFO     | job 6747579452 has finished - writing final server update
[2025-07-27 17:56:04] 2025-07-27 21:55:27,880 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:56:04] 2025-07-27 21:55:27,881 | INFO     | executing command: lscpu
[2025-07-27 17:56:04] 2025-07-27 21:55:27,909 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:56:04] 2025-07-27 21:55:29,955 | INFO     | monitor loop #378: job 0:6747579452 is in state 'finished'
[2025-07-27 17:56:04] 2025-07-27 21:55:29,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:56:04] 2025-07-27 21:55:30,437 | INFO     | PID=6378 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 17:56:04] 2025-07-27 21:55:32,458 | INFO     | monitor loop #379: job 0:6747579452 is in state 'finished'
[2025-07-27 17:56:04] 2025-07-27 21:55:32,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:56:04] 2025-07-27 21:55:32,879 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 17:56:04] 2025-07-27 21:55:32,883 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-27 17:56:04] 2025-07-27 21:55:32,885 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747579452/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:56:04] 2025-07-27 21:55:32,886 | INFO     | extracted standard info from prmon json
[2025-07-27 17:56:04] 2025-07-27 21:55:32,886 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:56:04] 2025-07-27 21:55:32,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:56:04] 2025-07-27 21:55:32,887 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:56:04] 2025-07-27 21:55:32,887 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:56:04] 2025-07-27 21:55:32,888 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:56:04] 2025-07-27 21:55:32,889 | INFO     | sum of square deviations: 136095575.0
[2025-07-27 17:56:04] 2025-07-27 21:55:32,889 | INFO     | sum of deviations: -10267948768.999998
[2025-07-27 17:56:04] 2025-07-27 21:55:32,889 | INFO     | mean x: 1753650895.5
[2025-07-27 17:56:04] 2025-07-27 21:55:32,889 | INFO     | mean y: 2831523.3947368423
[2025-07-27 17:56:04] 2025-07-27 21:55:32,889 | INFO     | -- intersect: 132309833817.22368
[2025-07-27 17:56:04] 2025-07-27 21:55:32,890 | INFO     | intersect: 132309833817.22368
[2025-07-27 17:56:04] 2025-07-27 21:55:32,890 | INFO     | chi2: 0.10064693309456545
[2025-07-27 17:56:04] 2025-07-27 21:55:32,890 | INFO     | -- intersect: 132309833817.22368
[2025-07-27 17:56:04] 2025-07-27 21:55:32,890 | INFO     | current memory leak: -75.45 B/s (using 76 data points, chi2=0.10)
[2025-07-27 17:56:04] 2025-07-27 21:55:32,890 | INFO     | could have reported an average CPU frequency of 2036 MHz (6 samples)
[2025-07-27 17:56:04] 2025-07-27 21:55:32,890 | INFO     | ..............................
[2025-07-27 17:56:04] 2025-07-27 21:55:32,891 | INFO     | . Timing measurements:
[2025-07-27 17:56:04] 2025-07-27 21:55:32,891 | INFO     | . get job = 0 s
[2025-07-27 17:56:04] 2025-07-27 21:55:32,891 | INFO     | . initial setup = 2 s
[2025-07-27 17:56:04] 2025-07-27 21:55:32,891 | INFO     | . payload setup = 9 s
[2025-07-27 17:56:04] 2025-07-27 21:55:32,891 | INFO     | . stage-in = 0 s
[2025-07-27 17:56:04] 2025-07-27 21:55:32,891 | INFO     | . payload execution = 5020 s
[2025-07-27 17:56:04] 2025-07-27 21:55:32,891 | INFO     | . stage-out = 0 s
[2025-07-27 17:56:04] 2025-07-27 21:55:32,891 | INFO     | . log creation = 0 s
[2025-07-27 17:56:04] 2025-07-27 21:55:32,891 | INFO     | ..............................
[2025-07-27 17:56:04] 2025-07-27 21:55:32,975 | INFO     | 
[2025-07-27 17:56:04] 2025-07-27 21:55:32,975 | INFO     | job summary report
[2025-07-27 17:56:04] 2025-07-27 21:55:32,975 | INFO     | --------------------------------------------------
[2025-07-27 17:56:04] 2025-07-27 21:55:32,975 | INFO     | PanDA job id: 6747579452
[2025-07-27 17:56:04] 2025-07-27 21:55:32,976 | INFO     | task id: 45743349
[2025-07-27 17:56:04] 2025-07-27 21:55:32,976 | INFO     | errors: (none)
[2025-07-27 17:56:04] 2025-07-27 21:55:32,976 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:56:04] 2025-07-27 21:55:32,976 | INFO     | pilot state: finished 
[2025-07-27 17:56:04] 2025-07-27 21:55:32,976 | INFO     | transexitcode: 0
[2025-07-27 17:56:04] 2025-07-27 21:55:32,976 | INFO     | exeerrorcode: 0
[2025-07-27 17:56:04] 2025-07-27 21:55:32,977 | INFO     | exeerrordiag: 
[2025-07-27 17:56:04] 2025-07-27 21:55:32,977 | INFO     | exitcode: 0
[2025-07-27 17:56:04] 2025-07-27 21:55:32,977 | INFO     | exitmsg: OK
[2025-07-27 17:56:04] 2025-07-27 21:55:32,977 | INFO     | cpuconsumptiontime: 54082 s
[2025-07-27 17:56:04] 2025-07-27 21:55:32,977 | INFO     | nevents: 400
[2025-07-27 17:56:04] 2025-07-27 21:55:32,977 | INFO     | neventsw: 0
[2025-07-27 17:56:04] 2025-07-27 21:55:32,978 | INFO     | pid: 13427
[2025-07-27 17:56:04] 2025-07-27 21:55:32,978 | INFO     | pgrp: 13427
[2025-07-27 17:56:04] 2025-07-27 21:55:32,978 | INFO     | corecount: 12
[2025-07-27 17:56:04] 2025-07-27 21:55:32,978 | INFO     | event service: False
[2025-07-27 17:56:04] 2025-07-27 21:55:32,978 | INFO     | sizes: {0: 2397475, 1: 2397475, 5: 2397765, 11: 2397821, 5034: 2424095, 5037: 2433277, 5045: 2433415}
[2025-07-27 17:56:04] 2025-07-27 21:55:32,978 | INFO     | --------------------------------------------------
[2025-07-27 17:56:04] 2025-07-27 21:55:32,979 | INFO     | 
[2025-07-27 17:56:04] 2025-07-27 21:55:32,979 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:56:04] 2025-07-27 21:55:33,002 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,003 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,003 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,003 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,003 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,003 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,003 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,005 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,005 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,005 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,005 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,005 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:56:04] 2025-07-27 21:55:33,005 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,006 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:56:04] 2025-07-27 21:55:33,006 | INFO     | job 6747579452 has completed (purged errors)
[2025-07-27 17:56:04] 2025-07-27 21:55:33,006 | INFO     | overall cleanup function is called
[2025-07-27 17:56:04] 2025-07-27 21:55:34,014 | INFO     | --- collectZombieJob: --- 10, [13427]
[2025-07-27 17:56:04] 2025-07-27 21:55:34,014 | INFO     | zombie collector waiting for pid 13427
[2025-07-27 17:56:04] 2025-07-27 21:55:34,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:56:04] 2025-07-27 21:55:34,014 | INFO     | collected zombie processes
[2025-07-27 17:56:04] 2025-07-27 21:55:34,015 | INFO     | will attempt to kill all subprocesses of pid=13427
[2025-07-27 17:56:04] 2025-07-27 21:55:34,106 | INFO     | process IDs to be killed: [13427] (in reverse order)
[2025-07-27 17:56:04] 2025-07-27 21:55:34,158 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:56:04] 2025-07-27 21:55:34,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:56:04] 2025-07-27 21:55:34,162 | INFO     | did not find any defunct processes belonging to 13427
[2025-07-27 17:56:04] 2025-07-27 21:55:34,166 | INFO     | did not find any defunct processes belonging to 13427
[2025-07-27 17:56:04] 2025-07-27 21:55:34,166 | INFO     | ready for new job
[2025-07-27 17:56:04] 2025-07-27 21:55:34,167 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:56:04] 2025-07-27 21:55:34,168 | INFO     | ***************************************
[2025-07-27 17:56:04] 2025-07-27 21:55:34,168 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:56:04] 2025-07-27 21:55:34,168 | INFO     | ***************************************
[2025-07-27 17:56:04] 2025-07-27 21:55:34,168 | INFO     | 
[2025-07-27 17:56:04] 2025-07-27 21:55:34,168 | INFO     | architecture information:
[2025-07-27 17:56:04] 2025-07-27 21:55:34,169 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:56:04] 2025-07-27 21:55:34,183 | INFO     | cat /etc/os-release:
[2025-07-27 17:56:04] NAME="CentOS Linux"
[2025-07-27 17:56:04] VERSION="7 (Core)"
[2025-07-27 17:56:04] ID="centos"
[2025-07-27 17:56:04] ID_LIKE="rhel fedora"
[2025-07-27 17:56:04] VERSION_ID="7"
[2025-07-27 17:56:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:56:04] ANSI_COLOR="0;31"
[2025-07-27 17:56:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:56:04] HOME_URL="https://www.centos.org/"
[2025-07-27 17:56:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:56:04] 
[2025-07-27 17:56:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:56:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:56:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:56:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:56:04] 
[2025-07-27 17:56:04] 2025-07-27 21:55:34,183 | INFO     | ***************************************
[2025-07-27 17:56:04] 2025-07-27 21:55:34,686 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:56:04] 2025-07-27 21:55:34,703 | INFO     | sufficient remaining disk space (29514268672 B)
[2025-07-27 17:56:04] 2025-07-27 21:55:34,704 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:56:04] 2025-07-27 21:55:34,704 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:56:04] 2025-07-27 21:55:34,704 | INFO     | update_server=False
[2025-07-27 17:56:04] 2025-07-27 21:55:34,704 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:56:04] 2025-07-27 21:55:34,704 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:56:04] 2025-07-27 21:55:34,734 | INFO     | all data control threads have been joined
[2025-07-27 17:56:04] 2025-07-27 21:55:34,783 | INFO     | all payload control threads have been joined
[2025-07-27 17:56:04] 2025-07-27 21:55:34,960 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 17:56:04] 2025-07-27 21:55:34,960 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 17:56:04] 2025-07-27 21:55:34,960 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:56:04] 2025-07-27 21:55:34,960 | INFO     | will abort loop
[2025-07-27 17:56:04] 2025-07-27 21:55:35,172 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:56:04] 2025-07-27 21:55:35,487 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:56:04] 2025-07-27 21:55:35,709 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:35,710 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:35,739 | INFO     | [data] control thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:35,789 | INFO     | [payload] control thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:35,957 | INFO     | [job] validate thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:35,965 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:36,041 | INFO     | all job control threads have been joined
[2025-07-27 17:56:04] 2025-07-27 21:55:36,160 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:36,219 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:36,497 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:36,501 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:36,807 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:36,980 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:37,047 | INFO     | [job] control thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:37,170 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:37,177 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:39,493 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:56:04] 2025-07-27 21:55:39,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140034797389632)>', '<ExcThread(monitor, started 140034363606784)>']
[2025-07-27 17:56:04] 2025-07-27 21:55:44,875 | INFO     | all workflow threads have been joined
[2025-07-27 17:56:04] 2025-07-27 21:55:44,875 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:56:04] 2025-07-27 21:55:44,876 | INFO     | traces error code: 0
[2025-07-27 17:56:04] 2025-07-27 21:55:44,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:56:04] 2025-07-27 21:56:04,646 | INFO     | PID=6378 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 17:56:04] 2025-07-27 21:56:04,647 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:56:04] 2025-07-27 21:56:04,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:56:04] 2025-07-27 21:56:04,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:56:04] 2025-07-27 21:56:04,647 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:56:04] 2025-07-27 21:56:04,647 | INFO     | [monitor] control thread has ended
[2025-07-27 17:56:04] 2025-07-27 21:56:04,736 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:56:04] 2025-07-27 21:56:04,740 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:56:04] 2025-07-27 21:56:04,744 [wrapper] pilotpid: 6378
[2025-07-27 17:56:04] 2025-07-27 21:56:04,747 [wrapper] Pilot exit status: 0
[2025-07-27 17:56:04] 2025-07-27 21:56:04,763 [wrapper] pandaids: 6747579452
[2025-07-27 17:56:04] 2025-07-27 21:56:04,805 [wrapper] cleanup supervisor_pilot 26303 6379
[2025-07-27 17:56:04] 2025-07-27 21:56:04,808 [wrapper] Test setup, not cleaning
[2025-07-27 17:56:04] 2025-07-27 21:56:04,812 [wrapper] apfmon messages muted
[2025-07-27 17:56:04] 2025-07-27 21:56:04,816 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:56:04] 2025-07-27 21:56:04,820 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:56:04]  *** Error codes and diagnostics ***
[2025-07-27 17:56:04]     "exeErrorCode": 0,
[2025-07-27 17:56:04]     "exeErrorDiag": "",
[2025-07-27 17:56:04]     "pilotErrorCode": 0,
[2025-07-27 17:56:04]     "pilotErrorDiag": "",
[2025-07-27 17:56:04]  *** Listing of results directory ***
[2025-07-27 17:56:04] total 355628
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 14:08 pilot3.tar.gz
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 14:12 queuedata.json
[2025-07-27 17:56:04] -rwx------ 1 boincer umatlas     36292 Jul 27 14:13 runpilot2-wrapper.sh
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas       100 Jul 27 16:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:56:04] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 16:30 run_atlas
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas       105 Jul 27 16:30 job.xml
[2025-07-27 17:56:04] -rw-r--r-- 2 boincer umatlas 145924289 Jul 27 16:30 EVNT.45743347._002938.pool.root.1
[2025-07-27 17:56:04] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 16:30 start_atlas.sh
[2025-07-27 17:56:04] drwxrwx--x 2 boincer umatlas      4096 Jul 27 16:30 shared
[2025-07-27 17:56:04] -rw-r--r-- 2 boincer umatlas    542895 Jul 27 16:30 input.tar.gz
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas         0 Jul 27 16:30 boinc_lockfile
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas      2563 Jul 27 16:30 pandaJob.out
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas    980109 Jul 27 16:31 agis_schedconf.cvmfs.json
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas   1593052 Jul 27 16:31 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:56:04] drwx------ 4 boincer umatlas      4096 Jul 27 16:31 pilot3
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 17:45 init_data.xml
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas 212687999 Jul 27 17:54 HITS.45743349._053638.pool.root.1
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas       529 Jul 27 17:55 boinc_task_state.xml
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas        95 Jul 27 17:55 pilot_heartbeat.json
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas      1050 Jul 27 17:55 memory_monitor_summary.json
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas    359563 Jul 27 17:55 log.45743349._053638.job.log.tgz.1
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas      7858 Jul 27 17:55 heartbeat.json
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 17:55 boinc_mmap_file
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas        27 Jul 27 17:55 wrapper_checkpoint.txt
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas       744 Jul 27 17:56 pilotlog.txt
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas    480402 Jul 27 17:56 log.45743349._053638.job.log.1
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas       357 Jul 27 17:56 output.list
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas       620 Jul 27 17:56 runtime_log
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas    860160 Jul 27 17:56 result.tar.gz
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 17:56 runtime_log.err
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas       659 Jul 27 17:56 i99NDmm3K07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmg4VLDmjWtERo.diag
[2025-07-27 17:56:04] -rw-r--r-- 1 boincer umatlas     21999 Jul 27 17:56 stderr.txt
[2025-07-27 17:56:04] HITS file was successfully produced:
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas 212687999 Jul 27 17:54 shared/HITS.pool.root.1
[2025-07-27 17:56:04]  *** Contents of shared directory: ***
[2025-07-27 17:56:04] total 351600
[2025-07-27 17:56:04] -rw-r--r-- 2 boincer umatlas 145924289 Jul 27 16:30 ATLAS.root_0
[2025-07-27 17:56:04] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 16:30 start_atlas.sh
[2025-07-27 17:56:04] -rw-r--r-- 2 boincer umatlas    542895 Jul 27 16:30 input.tar.gz
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas 212687999 Jul 27 17:54 HITS.pool.root.1
[2025-07-27 17:56:04] -rw------- 1 boincer umatlas    860160 Jul 27 17:56 result.tar.gz
17:56:06 (2397): run_atlas exited; CPU time 53999.667756
17:56:06 (2397): called boinc_finish(0)

</stderr_txt>
]]>

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