Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:52:46 (1439983): wrapper (7.7.26015): starting
17:52:46 (1439983): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 17:52:46] Arguments: --nthreads 12
[2025-07-27 17:52:46] Threads: 12
[2025-07-27 17:52:46] Checking for CVMFS
[2025-07-27 17:52:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:52:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:52:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:52:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:52:46] 2.13.0.0 2408171 18930 314788 148825 2 68 28217499 32935937 9447 16776704 0 38657322 99.683 59836471 29704 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 17:52:46] CVMFS is ok
[2025-07-27 17:52:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:52:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:52:46] Further information can be found at the LHC@home message board.
[2025-07-27 17:52:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:52:46] Checking for apptainer binary...
[2025-07-27 17:52:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:52:46] Running /usr/bin/apptainer --version
[2025-07-27 17:52:46] apptainer version 1.4.1-1.el9
[2025-07-27 17:52:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:52:47] c6-5-7-3.aglt2.org
[2025-07-27 17:52:47] apptainer works
[2025-07-27 17:52:47] Set ATHENA_PROC_NUMBER=12
[2025-07-27 17:52:47] Set ATHENA_CORE_NUMBER=12
[2025-07-27 17:52:47] Starting ATLAS job with PandaID=6747579413
[2025-07-27 17:52:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:09:04]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:09:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 19:09:04]  replicas=None
[2025-07-27 19:09:04]  scope=mc23_13p6TeV
[2025-07-27 19:09:04]  status=None
[2025-07-27 19:09:04]  status_code=0
[2025-07-27 19:09:04]  storage_token=
[2025-07-27 19:09:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747579413/log.45743349._053599.job.log.tgz.1
[2025-07-27 19:09:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/13/log.45743349._053599.job.log.tgz.1
[2025-07-27 19:09:04]  workdir=None
[2025-07-27 19:09:04] ]
[2025-07-27 19:09:04] 2025-07-27 23:08:22,009 | INFO     | transferring file log.45743349._053599.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747579413/log.45743349._053599.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:09:04] 2025-07-27 23:08:22,009 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747579413/log.45743349._053599.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._053599.job
[2025-07-27 19:09:04] 2025-07-27 23:08:22,028 | INFO     | adding to output.list: log.45743349._053599.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/13/log.45743349._053599.job.log.tg
[2025-07-27 19:09:04] 2025-07-27 23:08:22,029 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:09:04] 2025-07-27 23:08:22,029 | INFO     | summary of transferred files:
[2025-07-27 19:09:04] 2025-07-27 23:08:22,029 | INFO     |  -- lfn=log.45743349._053599.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:09:04] 2025-07-27 23:08:22,030 | INFO     | stage-out finished correctly
[2025-07-27 19:09:04] 2025-07-27 23:08:23,222 | INFO     | monitor loop #330: job 0:6747579413 is in state 'finished'
[2025-07-27 19:09:04] 2025-07-27 23:08:23,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:09:04] 2025-07-27 23:08:25,259 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:09:04] 2025-07-27 23:08:25,725 | INFO     | monitor loop #331: job 0:6747579413 is in state 'finished'
[2025-07-27 19:09:04] 2025-07-27 23:08:25,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:09:04] 2025-07-27 23:08:27,204 | INFO     | job 6747579413 has state=finished
[2025-07-27 19:09:04] 2025-07-27 23:08:27,204 | INFO     | preparing for final server update for job 6747579413 in state='finished'
[2025-07-27 19:09:04] 2025-07-27 23:08:27,205 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:09:04] 2025-07-27 23:08:27,205 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:09:04] 2025-07-27 23:08:27,205 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:09:04] 2025-07-27 23:08:27,205 | INFO     | job 6747579413 has finished - writing final server update
[2025-07-27 19:09:04] 2025-07-27 23:08:27,206 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:09:04] 2025-07-27 23:08:27,206 | INFO     | executing command: lscpu
[2025-07-27 19:09:04] 2025-07-27 23:08:27,265 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:09:04] 2025-07-27 23:08:28,228 | INFO     | monitor loop #332: job 0:6747579413 is in state 'finished'
[2025-07-27 19:09:04] 2025-07-27 23:08:28,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:09:04] 2025-07-27 23:08:29,803 | INFO     | PID=1444096 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:09:04] 2025-07-27 23:08:29,804 | INFO     | .. there are 15 such processes running
[2025-07-27 19:09:04] 2025-07-27 23:08:30,731 | INFO     | monitor loop #333: job 0:6747579413 is in state 'finished'
[2025-07-27 19:09:04] 2025-07-27 23:08:30,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:09:04] 2025-07-27 23:08:31,696 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 19:09:04] 2025-07-27 23:08:31,704 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2900.0597678571435
[2025-07-27 19:09:04] 2025-07-27 23:08:31,712 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747579413/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:09:04] 2025-07-27 23:08:31,713 | INFO     | extracted standard info from prmon json
[2025-07-27 19:09:04] 2025-07-27 23:08:31,713 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:09:04] 2025-07-27 23:08:31,713 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:09:04] 2025-07-27 23:08:31,714 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:09:04] 2025-07-27 23:08:31,714 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:09:04] 2025-07-27 23:08:31,715 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:09:04] 2025-07-27 23:08:31,715 | INFO     | sum of square deviations: 93240818.0
[2025-07-27 19:09:04] 2025-07-27 23:08:31,715 | INFO     | sum of deviations: -126797344.9999995
[2025-07-27 19:09:04] 2025-07-27 23:08:31,715 | INFO     | mean x: 1753655529.0
[2025-07-27 19:09:04] 2025-07-27 23:08:31,715 | INFO     | mean y: 2404791.1641791044
[2025-07-27 19:09:04] 2025-07-27 23:08:31,716 | INFO     | -- intersect: 2387185082.578714
[2025-07-27 19:09:04] 2025-07-27 23:08:31,716 | INFO     | intersect: 2387185082.578714
[2025-07-27 19:09:04] 2025-07-27 23:08:31,716 | INFO     | chi2: 0.10329759357791556
[2025-07-27 19:09:04] 2025-07-27 23:08:31,716 | INFO     | -- intersect: 2387185082.578714
[2025-07-27 19:09:04] 2025-07-27 23:08:31,716 | INFO     | current memory leak: -1.36 B/s (using 67 data points, chi2=0.10)
[2025-07-27 19:09:04] 2025-07-27 23:08:31,716 | INFO     | could have reported an average CPU frequency of 2723 MHz (6 samples)
[2025-07-27 19:09:04] 2025-07-27 23:08:31,717 | INFO     | ..............................
[2025-07-27 19:09:04] 2025-07-27 23:08:31,717 | INFO     | . Timing measurements:
[2025-07-27 19:09:04] 2025-07-27 23:08:31,717 | INFO     | . get job = 0 s
[2025-07-27 19:09:04] 2025-07-27 23:08:31,717 | INFO     | . initial setup = 2 s
[2025-07-27 19:09:04] 2025-07-27 23:08:31,717 | INFO     | . payload setup = 8 s
[2025-07-27 19:09:04] 2025-07-27 23:08:31,717 | INFO     | . stage-in = 0 s
[2025-07-27 19:09:04] 2025-07-27 23:08:31,717 | INFO     | . payload execution = 4492 s
[2025-07-27 19:09:04] 2025-07-27 23:08:31,717 | INFO     | . stage-out = 0 s
[2025-07-27 19:09:04] 2025-07-27 23:08:31,717 | INFO     | . log creation = 0 s
[2025-07-27 19:09:04] 2025-07-27 23:08:31,717 | INFO     | ..............................
[2025-07-27 19:09:04] 2025-07-27 23:08:31,860 | INFO     | 
[2025-07-27 19:09:04] 2025-07-27 23:08:31,860 | INFO     | job summary report
[2025-07-27 19:09:04] 2025-07-27 23:08:31,860 | INFO     | --------------------------------------------------
[2025-07-27 19:09:04] 2025-07-27 23:08:31,860 | INFO     | PanDA job id: 6747579413
[2025-07-27 19:09:04] 2025-07-27 23:08:31,860 | INFO     | task id: 45743349
[2025-07-27 19:09:04] 2025-07-27 23:08:31,860 | INFO     | errors: (none)
[2025-07-27 19:09:04] 2025-07-27 23:08:31,860 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:09:04] 2025-07-27 23:08:31,860 | INFO     | pilot state: finished 
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | transexitcode: 0
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | exeerrorcode: 0
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | exeerrordiag: 
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | exitcode: 0
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | exitmsg: OK
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | cpuconsumptiontime: 47433 s
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | nevents: 400
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | neventsw: 0
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | pid: 1450592
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | pgrp: 1450592
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | corecount: 12
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | event service: False
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | sizes: {0: 2397475, 6: 2397737, 11: 2397765, 4504: 2423783, 4505: 2432781, 4508: 2432837, 4515: 2433159}
[2025-07-27 19:09:04] 2025-07-27 23:08:31,861 | INFO     | --------------------------------------------------
[2025-07-27 19:09:04] 2025-07-27 23:08:31,862 | INFO     | 
[2025-07-27 19:09:04] 2025-07-27 23:08:31,862 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 19:09:04] 2025-07-27 23:08:31,880 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,880 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,881 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,882 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,882 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,882 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:09:04] 2025-07-27 23:08:31,882 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,882 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:09:04] 2025-07-27 23:08:31,882 | INFO     | job 6747579413 has completed (purged errors)
[2025-07-27 19:09:04] 2025-07-27 23:08:31,882 | INFO     | overall cleanup function is called
[2025-07-27 19:09:04] 2025-07-27 23:08:32,890 | INFO     | --- collectZombieJob: --- 10, [1450592]
[2025-07-27 19:09:04] 2025-07-27 23:08:32,891 | INFO     | zombie collector waiting for pid 1450592
[2025-07-27 19:09:04] 2025-07-27 23:08:32,891 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:09:04] 2025-07-27 23:08:32,891 | INFO     | collected zombie processes
[2025-07-27 19:09:04] 2025-07-27 23:08:32,892 | INFO     | will attempt to kill all subprocesses of pid=1450592
[2025-07-27 19:09:04] 2025-07-27 23:08:33,166 | INFO     | process IDs to be killed: [1450592] (in reverse order)
[2025-07-27 19:09:04] 2025-07-27 23:08:33,251 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:09:04] 2025-07-27 23:08:33,251 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:09:04] 2025-07-27 23:08:33,263 | INFO     | did not find any defunct processes belonging to 1450592
[2025-07-27 19:09:04] 2025-07-27 23:08:33,275 | INFO     | did not find any defunct processes belonging to 1450592
[2025-07-27 19:09:04] 2025-07-27 23:08:33,276 | INFO     | ready for new job
[2025-07-27 19:09:04] 2025-07-27 23:08:33,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:09:04] 2025-07-27 23:08:33,278 | INFO     | ***************************************
[2025-07-27 19:09:04] 2025-07-27 23:08:33,278 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:09:04] 2025-07-27 23:08:33,279 | INFO     | ***************************************
[2025-07-27 19:09:04] 2025-07-27 23:08:33,279 | INFO     | 
[2025-07-27 19:09:04] 2025-07-27 23:08:33,282 | INFO     | architecture information:
[2025-07-27 19:09:04] 2025-07-27 23:08:33,282 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:09:04] 2025-07-27 23:08:33,298 | INFO     | cat /etc/os-release:
[2025-07-27 19:09:04] NAME="CentOS Linux"
[2025-07-27 19:09:04] VERSION="7 (Core)"
[2025-07-27 19:09:04] ID="centos"
[2025-07-27 19:09:04] ID_LIKE="rhel fedora"
[2025-07-27 19:09:04] VERSION_ID="7"
[2025-07-27 19:09:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:09:04] ANSI_COLOR="0;31"
[2025-07-27 19:09:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:09:04] HOME_URL="https://www.centos.org/"
[2025-07-27 19:09:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:09:04] 
[2025-07-27 19:09:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:09:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:09:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:09:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:09:04] 
[2025-07-27 19:09:04] 2025-07-27 23:08:33,298 | INFO     | ***************************************
[2025-07-27 19:09:04] 2025-07-27 23:08:33,800 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 19:09:04] 2025-07-27 23:08:33,815 | INFO     | sufficient remaining disk space (76510396416 B)
[2025-07-27 19:09:04] 2025-07-27 23:08:33,816 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:09:04] 2025-07-27 23:08:33,816 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:09:04] 2025-07-27 23:08:33,816 | INFO     | update_server=False
[2025-07-27 19:09:04] 2025-07-27 23:08:33,816 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:09:04] 2025-07-27 23:08:34,060 | INFO     | all payload control threads have been joined
[2025-07-27 19:09:04] 2025-07-27 23:08:34,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:09:04] 2025-07-27 23:08:34,244 | INFO     | aborting loop
[2025-07-27 19:09:04] 2025-07-27 23:08:34,401 | INFO     | all data control threads have been joined
[2025-07-27 19:09:04] 2025-07-27 23:08:34,821 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:34,961 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:34,962 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:35,025 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:35,065 | INFO     | [payload] control thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:35,121 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:09:04] 2025-07-27 23:08:35,197 | INFO     | all job control threads have been joined
[2025-07-27 19:09:04] 2025-07-27 23:08:35,249 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:35,264 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:35,265 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:35,406 | INFO     | [data] control thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:35,617 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:35,641 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:35,835 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:09:04] 2025-07-27 23:08:36,134 | INFO     | [job] validate thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:36,202 | INFO     | [job] control thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:36,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:09:04] 2025-07-27 23:08:37,126 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:37,808 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:39,840 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:09:04] 2025-07-27 23:08:40,521 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140287596001088)>', '<ExcThread(monitor, started 140287095588608)>']
[2025-07-27 19:09:04] 2025-07-27 23:08:45,546 | INFO     | all workflow threads have been joined
[2025-07-27 19:09:04] 2025-07-27 23:08:45,546 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:09:04] 2025-07-27 23:08:45,547 | INFO     | traces error code: 0
[2025-07-27 19:09:04] 2025-07-27 23:08:45,547 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:09:04] 2025-07-27 23:09:04,183 | INFO     | PID=1444096 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:09:04] 2025-07-27 23:09:04,184 | INFO     | .. there are 14 such processes running
[2025-07-27 19:09:04] 2025-07-27 23:09:04,184 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:09:04] 2025-07-27 23:09:04,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:09:04] 2025-07-27 23:09:04,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:09:04] 2025-07-27 23:09:04,184 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:09:04] 2025-07-27 23:09:04,184 | INFO     | [monitor] control thread has ended
[2025-07-27 19:09:04] 2025-07-27 23:09:04,342 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:09:04] 2025-07-27 23:09:04,346 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:09:04] 2025-07-27 23:09:04,349 [wrapper] pilotpid: 1444096
[2025-07-27 19:09:04] 2025-07-27 23:09:04,352 [wrapper] Pilot exit status: 0
[2025-07-27 19:09:04] 2025-07-27 23:09:04,362 [wrapper] pandaids: 6747579413
[2025-07-27 19:09:04] 2025-07-27 23:09:04,438 [wrapper] cleanup supervisor_pilot 1675573 1444097
[2025-07-27 19:09:04] 2025-07-27 23:09:04,441 [wrapper] Test setup, not cleaning
[2025-07-27 19:09:04] 2025-07-27 23:09:04,443 [wrapper] apfmon messages muted
[2025-07-27 19:09:04] 2025-07-27 23:09:04,447 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:09:04] 2025-07-27 23:09:04,450 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:09:04]  *** Error codes and diagnostics ***
[2025-07-27 19:09:04]     "exeErrorCode": 0,
[2025-07-27 19:09:04]     "exeErrorDiag": "",
[2025-07-27 19:09:04]     "pilotErrorCode": 0,
[2025-07-27 19:09:04]     "pilotErrorDiag": "",
[2025-07-27 19:09:04]  *** Listing of results directory ***
[2025-07-27 19:09:04] total 356856
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 14:08 pilot3.tar.gz
[2025-07-27 19:09:04] -rwx------. 1 boincer umatlas     36292 Jul 27 14:12 runpilot2-wrapper.sh
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:12 queuedata.json
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:09:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:52 run_atlas
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:52 job.xml
[2025-07-27 19:09:04] -rw-r--r--. 2 boincer umatlas 145324671 Jul 27 17:52 EVNT.45743347._002935.pool.root.1
[2025-07-27 19:09:04] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 17:52 input.tar.gz
[2025-07-27 19:09:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:52 start_atlas.sh
[2025-07-27 19:09:04] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:52 shared
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:52 boinc_lockfile
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 17:52 pandaJob.out
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas    980117 Jul 27 17:52 agis_schedconf.cvmfs.json
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:52 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:09:04] drwx------. 4 boincer umatlas      4096 Jul 27 17:53 pilot3
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 19:04 init_data.xml
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas 214604011 Jul 27 19:07 HITS.45743349._053599.pool.root.1
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:07 boinc_task_state.xml
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas      1036 Jul 27 19:08 memory_monitor_summary.json
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas    363929 Jul 27 19:08 log.45743349._053599.job.log.tgz.1
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas        95 Jul 27 19:08 pilot_heartbeat.json
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas      7817 Jul 27 19:08 heartbeat.json
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:09 boinc_mmap_file
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:09 wrapper_checkpoint.txt
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas       823 Jul 27 19:09 pilotlog.txt
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas    446676 Jul 27 19:09 log.45743349._053599.job.log.1
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas       357 Jul 27 19:09 output.list
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:09 runtime_log
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas    829440 Jul 27 19:09 result.tar.gz
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas       655 Jul 27 19:09 ybjNDmo2K07n9Rq4apOajLDm4fhM0noT9bVof3QYDmjv2KDm5ETAGn.diag
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 19:09 runtime_log.err
[2025-07-27 19:09:04] -rw-r--r--. 1 boincer umatlas     22013 Jul 27 19:09 stderr.txt
[2025-07-27 19:09:04] HITS file was successfully produced:
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas 214604011 Jul 27 19:07 shared/HITS.pool.root.1
[2025-07-27 19:09:04]  *** Contents of shared directory: ***
[2025-07-27 19:09:04] total 352856
[2025-07-27 19:09:04] -rw-r--r--. 2 boincer umatlas 145324671 Jul 27 17:52 ATLAS.root_0
[2025-07-27 19:09:04] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 17:52 input.tar.gz
[2025-07-27 19:09:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:52 start_atlas.sh
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas 214604011 Jul 27 19:07 HITS.pool.root.1
[2025-07-27 19:09:04] -rw-------. 1 boincer umatlas    829440 Jul 27 19:09 result.tar.gz
19:09:05 (1439983): run_atlas exited; CPU time 47468.298982
19:09:05 (1439983): called boinc_finish(0)

</stderr_txt>
]]>

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