Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:31:31 (1589082): wrapper (7.7.26015): starting
16:31:31 (1589082): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 16:31:31] Arguments: --nthreads 8
[2025-07-27 16:31:31] Threads: 8
[2025-07-27 16:31:31] Checking for CVMFS
[2025-07-27 16:31:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:31:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:31:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:31:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:31:31] 2.13.1.0 704839 14605 160772 148823 1 196 32328320 40960001 10399 16776704 0 43597164 99.890 17311328 42287 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 16:31:31] CVMFS is ok
[2025-07-27 16:31:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:31:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:31:31] Further information can be found at the LHC@home message board.
[2025-07-27 16:31:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:31:31] Checking for apptainer binary...
[2025-07-27 16:31:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:31:31] Running /usr/bin/apptainer --version
[2025-07-27 16:31:31] apptainer version 1.4.1-1.el9
[2025-07-27 16:31:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:31:31] c-212-4.aglt2.org
[2025-07-27 16:31:31] apptainer works
[2025-07-27 16:31:32] Set ATHENA_PROC_NUMBER=8
[2025-07-27 16:31:32] Set ATHENA_CORE_NUMBER=8
[2025-07-27 16:31:32] Starting ATLAS job with PandaID=6747524887
[2025-07-27 16:31:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:58:33]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:58:33]  lfn=log.45743349._051800.job.log.tgz.1
[2025-07-27 17:58:33]  mtime=0
[2025-07-27 17:58:33]  protocol_id=None
[2025-07-27 17:58:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:58:33]  replicas=None
[2025-07-27 17:58:33]  scope=mc23_13p6TeV
[2025-07-27 17:58:33]  status=None
[2025-07-27 17:58:33]  status_code=0
[2025-07-27 17:58:33]  storage_token=
[2025-07-27 17:58:33]  surl=/tmp/boinchome/slots/7/PanDA_Pilot-6747524887/log.45743349._051800.job.log.tgz.1
[2025-07-27 17:58:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/75/log.45743349._051800.job.log.tgz.1
[2025-07-27 17:58:33]  workdir=None
[2025-07-27 17:58:33] ]
[2025-07-27 17:58:33] 2025-07-27 21:57:53,001 | INFO     | transferring file log.45743349._051800.job.log.tgz.1 from /tmp/boinchome/slots/7/PanDA_Pilot-6747524887/log.45743349._051800.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:58:33] 2025-07-27 21:57:53,001 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/7/PanDA_Pilot-6747524887/log.45743349._051800.job.log.tgz.1 /tmp/boinchome/slots/7/log.45743349._051800.job
[2025-07-27 17:58:33] 2025-07-27 21:57:53,029 | INFO     | adding to output.list: log.45743349._051800.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/75/log.45743349._051800.job.log.tg
[2025-07-27 17:58:33] 2025-07-27 21:57:53,030 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:58:33] 2025-07-27 21:57:53,030 | INFO     | summary of transferred files:
[2025-07-27 17:58:33] 2025-07-27 21:57:53,030 | INFO     |  -- lfn=log.45743349._051800.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:58:33] 2025-07-27 21:57:53,030 | INFO     | stage-out finished correctly
[2025-07-27 17:58:33] 2025-07-27 21:57:53,597 | INFO     | monitor loop #377: job 0:6747524887 is in state 'finished'
[2025-07-27 17:58:33] 2025-07-27 21:57:53,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:58:33] 2025-07-27 21:57:54,640 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:58:33] 2025-07-27 21:57:56,101 | INFO     | monitor loop #378: job 0:6747524887 is in state 'finished'
[2025-07-27 17:58:33] 2025-07-27 21:57:56,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:58:33] 2025-07-27 21:57:57,179 | INFO     | job 6747524887 has state=finished
[2025-07-27 17:58:33] 2025-07-27 21:57:57,179 | INFO     | preparing for final server update for job 6747524887 in state='finished'
[2025-07-27 17:58:33] 2025-07-27 21:57:57,180 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:58:33] 2025-07-27 21:57:57,180 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:58:33] 2025-07-27 21:57:57,180 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:58:33] 2025-07-27 21:57:57,180 | INFO     | job 6747524887 has finished - writing final server update
[2025-07-27 17:58:33] 2025-07-27 21:57:57,181 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:58:33] 2025-07-27 21:57:57,184 | INFO     | executing command: lscpu
[2025-07-27 17:58:33] 2025-07-27 21:57:57,239 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:58:33] 2025-07-27 21:57:58,605 | INFO     | monitor loop #379: job 0:6747524887 is in state 'finished'
[2025-07-27 17:58:33] 2025-07-27 21:57:58,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:58:33] 2025-07-27 21:58:01,062 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 17:58:33] 2025-07-27 21:58:01,067 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3316.9642187500017
[2025-07-27 17:58:33] 2025-07-27 21:58:01,082 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6747524887/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:58:33] 2025-07-27 21:58:01,082 | INFO     | extracted standard info from prmon json
[2025-07-27 17:58:33] 2025-07-27 21:58:01,082 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:58:33] 2025-07-27 21:58:01,082 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:58:33] 2025-07-27 21:58:01,083 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:58:33] 2025-07-27 21:58:01,083 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:58:33] 2025-07-27 21:58:01,084 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:58:33] 2025-07-27 21:58:01,085 | INFO     | sum of square deviations: 147126479.5
[2025-07-27 17:58:33] 2025-07-27 21:58:01,085 | INFO     | sum of deviations: -2043793379.5
[2025-07-27 17:58:33] 2025-07-27 21:58:01,085 | INFO     | mean x: 1753650987.5
[2025-07-27 17:58:33] 2025-07-27 21:58:01,085 | INFO     | mean y: 2548525.371794872
[2025-07-27 17:58:33] 2025-07-27 21:58:01,085 | INFO     | -- intersect: 24363223030.64423
[2025-07-27 17:58:33] 2025-07-27 21:58:01,085 | INFO     | intersect: 24363223030.64423
[2025-07-27 17:58:33] 2025-07-27 21:58:01,086 | INFO     | chi2: 0.002089313784553277
[2025-07-27 17:58:33] 2025-07-27 21:58:01,086 | INFO     | -- intersect: 24363223030.64423
[2025-07-27 17:58:33] 2025-07-27 21:58:01,086 | INFO     | current memory leak: -13.89 B/s (using 78 data points, chi2=0.00)
[2025-07-27 17:58:33] 2025-07-27 21:58:01,086 | INFO     | could have reported an average CPU frequency of 3270 MHz (6 samples)
[2025-07-27 17:58:33] 2025-07-27 21:58:01,086 | INFO     | ..............................
[2025-07-27 17:58:33] 2025-07-27 21:58:01,086 | INFO     | . Timing measurements:
[2025-07-27 17:58:33] 2025-07-27 21:58:01,087 | INFO     | . get job = 0 s
[2025-07-27 17:58:33] 2025-07-27 21:58:01,087 | INFO     | . initial setup = 2 s
[2025-07-27 17:58:33] 2025-07-27 21:58:01,087 | INFO     | . payload setup = 7 s
[2025-07-27 17:58:33] 2025-07-27 21:58:01,087 | INFO     | . stage-in = 0 s
[2025-07-27 17:58:33] 2025-07-27 21:58:01,087 | INFO     | . payload execution = 5142 s
[2025-07-27 17:58:33] 2025-07-27 21:58:01,087 | INFO     | . stage-out = 0 s
[2025-07-27 17:58:33] 2025-07-27 21:58:01,087 | INFO     | . log creation = 0 s
[2025-07-27 17:58:33] 2025-07-27 21:58:01,087 | INFO     | ..............................
[2025-07-27 17:58:33] 2025-07-27 21:58:01,621 | INFO     | 
[2025-07-27 17:58:33] 2025-07-27 21:58:01,621 | INFO     | job summary report
[2025-07-27 17:58:33] 2025-07-27 21:58:01,622 | INFO     | --------------------------------------------------
[2025-07-27 17:58:33] 2025-07-27 21:58:01,622 | INFO     | PanDA job id: 6747524887
[2025-07-27 17:58:33] 2025-07-27 21:58:01,622 | INFO     | task id: 45743349
[2025-07-27 17:58:33] 2025-07-27 21:58:01,622 | INFO     | errors: (none)
[2025-07-27 17:58:33] 2025-07-27 21:58:01,622 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:58:33] 2025-07-27 21:58:01,622 | INFO     | pilot state: finished 
[2025-07-27 17:58:33] 2025-07-27 21:58:01,622 | INFO     | transexitcode: 0
[2025-07-27 17:58:33] 2025-07-27 21:58:01,622 | INFO     | exeerrorcode: 0
[2025-07-27 17:58:33] 2025-07-27 21:58:01,622 | INFO     | exeerrordiag: 
[2025-07-27 17:58:33] 2025-07-27 21:58:01,624 | INFO     | exitcode: 0
[2025-07-27 17:58:33] 2025-07-27 21:58:01,624 | INFO     | exitmsg: OK
[2025-07-27 17:58:33] 2025-07-27 21:58:01,624 | INFO     | cpuconsumptiontime: 35758 s
[2025-07-27 17:58:33] 2025-07-27 21:58:01,624 | INFO     | nevents: 400
[2025-07-27 17:58:33] 2025-07-27 21:58:01,624 | INFO     | neventsw: 0
[2025-07-27 17:58:33] 2025-07-27 21:58:01,624 | INFO     | pid: 1599119
[2025-07-27 17:58:33] 2025-07-27 21:58:01,625 | INFO     | pgrp: 1599119
[2025-07-27 17:58:33] 2025-07-27 21:58:01,625 | INFO     | corecount: 8
[2025-07-27 17:58:33] 2025-07-27 21:58:01,625 | INFO     | event service: False
[2025-07-27 17:58:33] 2025-07-27 21:58:01,626 | INFO     | sizes: {0: 2397474, 5: 2397736, 11: 2397792, 5153: 2424016, 5154: 2433014, 5156: 2433070, 5162: 2433392}
[2025-07-27 17:58:33] 2025-07-27 21:58:01,626 | INFO     | --------------------------------------------------
[2025-07-27 17:58:33] 2025-07-27 21:58:01,626 | INFO     | 
[2025-07-27 17:58:33] 2025-07-27 21:58:01,626 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-07-27 17:58:33] 2025-07-27 21:58:01,650 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,650 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,650 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,650 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,650 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,650 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,650 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,650 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,651 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,651 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,651 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,651 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,651 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,651 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,651 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,651 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:58:33] 2025-07-27 21:58:01,651 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,651 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:58:33] 2025-07-27 21:58:01,651 | INFO     | job 6747524887 has completed (purged errors)
[2025-07-27 17:58:33] 2025-07-27 21:58:01,652 | INFO     | overall cleanup function is called
[2025-07-27 17:58:33] 2025-07-27 21:58:02,660 | INFO     | --- collectZombieJob: --- 10, [1599119]
[2025-07-27 17:58:33] 2025-07-27 21:58:02,661 | INFO     | zombie collector waiting for pid 1599119
[2025-07-27 17:58:33] 2025-07-27 21:58:02,662 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:58:33] 2025-07-27 21:58:02,663 | INFO     | collected zombie processes
[2025-07-27 17:58:33] 2025-07-27 21:58:02,663 | INFO     | will attempt to kill all subprocesses of pid=1599119
[2025-07-27 17:58:33] 2025-07-27 21:58:03,031 | INFO     | process IDs to be killed: [1599119] (in reverse order)
[2025-07-27 17:58:33] 2025-07-27 21:58:03,133 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:58:33] 2025-07-27 21:58:03,133 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:58:33] 2025-07-27 21:58:03,163 | INFO     | did not find any defunct processes belonging to 1599119
[2025-07-27 17:58:33] 2025-07-27 21:58:03,175 | INFO     | did not find any defunct processes belonging to 1599119
[2025-07-27 17:58:33] 2025-07-27 21:58:03,175 | INFO     | ready for new job
[2025-07-27 17:58:33] 2025-07-27 21:58:03,175 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:58:33] 2025-07-27 21:58:03,177 | INFO     | ***************************************
[2025-07-27 17:58:33] 2025-07-27 21:58:03,177 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:58:33] 2025-07-27 21:58:03,177 | INFO     | ***************************************
[2025-07-27 17:58:33] 2025-07-27 21:58:03,177 | INFO     | 
[2025-07-27 17:58:33] 2025-07-27 21:58:03,182 | INFO     | architecture information:
[2025-07-27 17:58:33] 2025-07-27 21:58:03,182 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:58:33] 2025-07-27 21:58:03,200 | INFO     | cat /etc/os-release:
[2025-07-27 17:58:33] NAME="CentOS Linux"
[2025-07-27 17:58:33] VERSION="7 (Core)"
[2025-07-27 17:58:33] ID="centos"
[2025-07-27 17:58:33] ID_LIKE="rhel fedora"
[2025-07-27 17:58:33] VERSION_ID="7"
[2025-07-27 17:58:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:58:33] ANSI_COLOR="0;31"
[2025-07-27 17:58:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:58:33] HOME_URL="https://www.centos.org/"
[2025-07-27 17:58:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:58:33] 
[2025-07-27 17:58:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:58:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:58:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:58:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:58:33] 
[2025-07-27 17:58:33] 2025-07-27 21:58:03,201 | INFO     | ***************************************
[2025-07-27 17:58:33] 2025-07-27 21:58:03,703 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-07-27 17:58:33] 2025-07-27 21:58:03,721 | INFO     | sufficient remaining disk space (124082192384 B)
[2025-07-27 17:58:33] 2025-07-27 21:58:03,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:58:33] 2025-07-27 21:58:03,721 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:58:33] 2025-07-27 21:58:03,722 | INFO     | update_server=False
[2025-07-27 17:58:33] 2025-07-27 21:58:03,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:58:33] 2025-07-27 21:58:03,722 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:58:33] 2025-07-27 21:58:03,973 | INFO     | all payload control threads have been joined
[2025-07-27 17:58:33] 2025-07-27 21:58:03,975 | INFO     | all job control threads have been joined
[2025-07-27 17:58:33] 2025-07-27 21:58:04,132 | INFO     | all data control threads have been joined
[2025-07-27 17:58:33] 2025-07-27 21:58:04,616 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:58:33] 2025-07-27 21:58:04,616 | INFO     | aborting loop
[2025-07-27 17:58:33] 2025-07-27 21:58:04,723 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:04,806 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:04,813 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:04,979 | INFO     | [payload] control thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:04,981 | INFO     | [job] control thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:05,137 | INFO     | [data] control thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:05,225 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:58:33] 2025-07-27 21:58:05,273 | INFO     | [job] validate thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:05,274 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:05,588 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:05,621 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:05,728 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:06,155 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:06,157 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:06,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:58:33] 2025-07-27 21:58:07,185 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:09,233 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:14,275 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:58:33] 2025-07-27 21:58:15,276 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:58:33] 2025-07-27 21:58:17,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140074031744832)>', '<ExcThread(monitor, started 140073672615680)>']
[2025-07-27 17:58:33] 2025-07-27 21:58:22,055 | INFO     | all workflow threads have been joined
[2025-07-27 17:58:33] 2025-07-27 21:58:22,055 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:58:33] 2025-07-27 21:58:22,056 | INFO     | traces error code: 0
[2025-07-27 17:58:33] 2025-07-27 21:58:22,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:58:33] 2025-07-27 21:58:33,563 | INFO     | PID=1592718 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:58:33] 2025-07-27 21:58:33,564 | INFO     | .. there are 13 such processes running
[2025-07-27 17:58:33] 2025-07-27 21:58:33,564 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:58:33] 2025-07-27 21:58:33,564 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:58:33] 2025-07-27 21:58:33,564 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:58:33] 2025-07-27 21:58:33,565 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:58:33] 2025-07-27 21:58:33,565 | INFO     | [monitor] control thread has ended
[2025-07-27 17:58:33] 2025-07-27 21:58:33,655 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:58:33] 2025-07-27 21:58:33,659 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:58:33] 2025-07-27 21:58:33,662 [wrapper] pilotpid: 1592718
[2025-07-27 17:58:33] 2025-07-27 21:58:33,665 [wrapper] Pilot exit status: 0
[2025-07-27 17:58:33] 2025-07-27 21:58:33,678 [wrapper] pandaids: 6747524887
[2025-07-27 17:58:33] 2025-07-27 21:58:33,761 [wrapper] cleanup supervisor_pilot 1911111 1592719
[2025-07-27 17:58:33] 2025-07-27 21:58:33,765 [wrapper] Test setup, not cleaning
[2025-07-27 17:58:33] 2025-07-27 21:58:33,767 [wrapper] apfmon messages muted
[2025-07-27 17:58:33] 2025-07-27 21:58:33,770 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:58:33] 2025-07-27 21:58:33,774 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:58:33]  *** Error codes and diagnostics ***
[2025-07-27 17:58:33]     "exeErrorCode": 0,
[2025-07-27 17:58:33]     "exeErrorDiag": "",
[2025-07-27 17:58:33]     "pilotErrorCode": 0,
[2025-07-27 17:58:33]     "pilotErrorDiag": "",
[2025-07-27 17:58:33]  *** Listing of results directory ***
[2025-07-27 17:58:33] total 441188
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:35 queuedata.json
[2025-07-27 17:58:33] -rwx------. 1 boincer umatlas     36292 Jul 27 11:37 runpilot2-wrapper.sh
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:58:33] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:31 run_atlas
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:31 job.xml
[2025-07-27 17:58:33] -rw-r--r--. 2 boincer umatlas 233723361 Jul 27 16:31 EVNT.45743347._002766.pool.root.1
[2025-07-27 17:58:33] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:31 start_atlas.sh
[2025-07-27 17:58:33] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:31 shared
[2025-07-27 17:58:33] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 16:31 input.tar.gz
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:31 boinc_lockfile
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 16:31 pandaJob.out
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas    980109 Jul 27 16:31 agis_schedconf.cvmfs.json
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:31 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:58:33] drwx------. 4 boincer umatlas      4096 Jul 27 16:31 pilot3
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas      6945 Jul 27 17:55 init_data.xml
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas 212535577 Jul 27 17:57 HITS.45743349._051800.pool.root.1
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:57 boinc_task_state.xml
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas      1026 Jul 27 17:57 memory_monitor_summary.json
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas    322845 Jul 27 17:57 log.45743349._051800.job.log.tgz.1
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas      7764 Jul 27 17:58 heartbeat.json
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:58 wrapper_checkpoint.txt
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:58 boinc_mmap_file
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas        95 Jul 27 17:58 pilot_heartbeat.json
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas       823 Jul 27 17:58 pilotlog.txt
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas    500277 Jul 27 17:58 log.45743349._051800.job.log.1
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas       357 Jul 27 17:58 output.list
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:58 runtime_log
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas    839680 Jul 27 17:58 result.tar.gz
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 17:58 runtime_log.err
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas       651 Jul 27 17:58 eeKNDmWcI07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzjVLDm5zJ12m.diag
[2025-07-27 17:58:33] -rw-r--r--. 1 boincer umatlas     21654 Jul 27 17:58 stderr.txt
[2025-07-27 17:58:33] HITS file was successfully produced:
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas 212535577 Jul 27 17:57 shared/HITS.pool.root.1
[2025-07-27 17:58:33]  *** Contents of shared directory: ***
[2025-07-27 17:58:33] total 437176
[2025-07-27 17:58:33] -rw-r--r--. 2 boincer umatlas 233723361 Jul 27 16:31 ATLAS.root_0
[2025-07-27 17:58:33] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:31 start_atlas.sh
[2025-07-27 17:58:33] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 16:31 input.tar.gz
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas 212535577 Jul 27 17:57 HITS.pool.root.1
[2025-07-27 17:58:33] -rw-------. 1 boincer umatlas    839680 Jul 27 17:58 result.tar.gz
17:58:35 (1589082): run_atlas exited; CPU time 35904.465851
17:58:35 (1589082): called boinc_finish(0)

</stderr_txt>
]]>

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