Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:25:11 (3900836): wrapper (7.7.26015): starting
16:25:11 (3900836): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 16:25:11] Arguments: --nthreads 8
[2025-07-27 16:25:11] Threads: 8
[2025-07-27 16:25:11] Checking for CVMFS
[2025-07-27 16:25:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:25:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:25:11] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:25:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:25:12] 2.13.1.0 1619052 13431 260160 148823 3 203 35988275 40960001 19629 16776704 0 74616885 99.645 85068979 37146 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 16:25:12] CVMFS is ok
[2025-07-27 16:25:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:25:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:25:12] Further information can be found at the LHC@home message board.
[2025-07-27 16:25:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:25:12] Checking for apptainer binary...
[2025-07-27 16:25:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:25:12] Running /usr/bin/apptainer --version
[2025-07-27 16:25:12] apptainer version 1.4.1-1.el9
[2025-07-27 16:25:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:25:12] c-212-15.aglt2.org
[2025-07-27 16:25:12] apptainer works
[2025-07-27 16:25:12] Set ATHENA_PROC_NUMBER=8
[2025-07-27 16:25:12] Set ATHENA_CORE_NUMBER=8
[2025-07-27 16:25:12] Starting ATLAS job with PandaID=6747411254
[2025-07-27 16:25:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:04:03]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:04:03]  status=None
[2025-07-27 18:04:03]  status_code=0
[2025-07-27 18:04:03]  storage_token=
[2025-07-27 18:04:03]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6747411254/log.45743349._048491.job.log.tgz.1
[2025-07-27 18:04:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/2d/log.45743349._048491.job.log.tgz.1
[2025-07-27 18:04:03]  workdir=None
[2025-07-27 18:04:03] ]
[2025-07-27 18:04:03] 2025-07-27 22:03:16,015 | INFO     | transferring file log.45743349._048491.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6747411254/log.45743349._048491.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 18:04:03] 2025-07-27 22:03:16,015 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6747411254/log.45743349._048491.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._048491.job
[2025-07-27 18:04:03] 2025-07-27 22:03:16,035 | INFO     | adding to output.list: log.45743349._048491.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/2d/log.45743349._048491.job.log.tg
[2025-07-27 18:04:03] 2025-07-27 22:03:16,036 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:04:03] 2025-07-27 22:03:16,036 | INFO     | summary of transferred files:
[2025-07-27 18:04:03] 2025-07-27 22:03:16,036 | INFO     |  -- lfn=log.45743349._048491.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:04:03] 2025-07-27 22:03:16,036 | INFO     | stage-out finished correctly
[2025-07-27 18:04:03] 2025-07-27 22:03:16,043 | INFO     | monitor loop #416: job 0:6747411254 is in state 'finished'
[2025-07-27 18:04:03] 2025-07-27 22:03:16,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:04:03] 2025-07-27 22:03:18,566 | INFO     | monitor loop #417: job 0:6747411254 is in state 'finished'
[2025-07-27 18:04:03] 2025-07-27 22:03:18,567 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:04:03] 2025-07-27 22:03:19,498 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:04:03] 2025-07-27 22:03:20,587 | INFO     | job 6747411254 has state=finished
[2025-07-27 18:04:03] 2025-07-27 22:03:20,587 | INFO     | preparing for final server update for job 6747411254 in state='finished'
[2025-07-27 18:04:03] 2025-07-27 22:03:20,588 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:04:03] 2025-07-27 22:03:20,588 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:04:03] 2025-07-27 22:03:20,588 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:04:03] 2025-07-27 22:03:20,588 | INFO     | job 6747411254 has finished - writing final server update
[2025-07-27 18:04:03] 2025-07-27 22:03:20,588 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:04:03] 2025-07-27 22:03:20,612 | INFO     | executing command: lscpu
[2025-07-27 18:04:03] 2025-07-27 22:03:20,697 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:04:03] 2025-07-27 22:03:21,078 | INFO     | monitor loop #418: job 0:6747411254 is in state 'finished'
[2025-07-27 18:04:03] 2025-07-27 22:03:21,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:04:03] 2025-07-27 22:03:23,582 | INFO     | monitor loop #419: job 0:6747411254 is in state 'finished'
[2025-07-27 18:04:03] 2025-07-27 22:03:23,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:04:03] 2025-07-27 22:03:26,090 | INFO     | monitor loop #420: job 0:6747411254 is in state 'finished'
[2025-07-27 18:04:03] 2025-07-27 22:03:26,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:04:03] 2025-07-27 22:03:28,600 | INFO     | monitor loop #421: job 0:6747411254 is in state 'finished'
[2025-07-27 18:04:03] 2025-07-27 22:03:28,603 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:04:03] 2025-07-27 22:03:29,729 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:04:03] 2025-07-27 22:03:29,751 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3075.0657708333333
[2025-07-27 18:04:03] 2025-07-27 22:03:29,766 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747411254/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:04:03] 2025-07-27 22:03:29,767 | INFO     | extracted standard info from prmon json
[2025-07-27 18:04:03] 2025-07-27 22:03:29,767 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:04:03] 2025-07-27 22:03:29,767 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:04:03] 2025-07-27 22:03:29,767 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:04:03] 2025-07-27 22:03:29,767 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:04:03] 2025-07-27 22:03:29,769 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:04:03] 2025-07-27 22:03:29,769 | INFO     | sum of square deviations: 218571174.98876375
[2025-07-27 18:04:03] 2025-07-27 22:03:29,769 | INFO     | sum of deviations: -11028171678.11236
[2025-07-27 18:04:03] 2025-07-27 22:03:29,770 | INFO     | mean x: 1753650944.011236
[2025-07-27 18:04:03] 2025-07-27 22:03:29,770 | INFO     | mean y: 2633000.112359551
[2025-07-27 18:04:03] 2025-07-27 22:03:29,770 | INFO     | -- intersect: 88484399523.23198
[2025-07-27 18:04:03] 2025-07-27 22:03:29,770 | INFO     | intersect: 88484399523.23198
[2025-07-27 18:04:03] 2025-07-27 22:03:29,770 | INFO     | chi2: 0.03738726582980637
[2025-07-27 18:04:03] 2025-07-27 22:03:29,770 | INFO     | -- intersect: 88484399523.23198
[2025-07-27 18:04:03] 2025-07-27 22:03:29,770 | INFO     | current memory leak: -50.46 B/s (using 89 data points, chi2=0.04)
[2025-07-27 18:04:03] 2025-07-27 22:03:29,771 | INFO     | could have reported an average CPU frequency of 3104 MHz (7 samples)
[2025-07-27 18:04:03] 2025-07-27 22:03:29,771 | INFO     | ..............................
[2025-07-27 18:04:03] 2025-07-27 22:03:29,771 | INFO     | . Timing measurements:
[2025-07-27 18:04:03] 2025-07-27 22:03:29,771 | INFO     | . get job = 0 s
[2025-07-27 18:04:03] 2025-07-27 22:03:29,771 | INFO     | . initial setup = 2 s
[2025-07-27 18:04:03] 2025-07-27 22:03:29,771 | INFO     | . payload setup = 8 s
[2025-07-27 18:04:03] 2025-07-27 22:03:29,771 | INFO     | . stage-in = 0 s
[2025-07-27 18:04:03] 2025-07-27 22:03:29,771 | INFO     | . payload execution = 5842 s
[2025-07-27 18:04:03] 2025-07-27 22:03:29,771 | INFO     | . stage-out = 0 s
[2025-07-27 18:04:03] 2025-07-27 22:03:29,771 | INFO     | . log creation = 0 s
[2025-07-27 18:04:03] 2025-07-27 22:03:29,771 | INFO     | ..............................
[2025-07-27 18:04:03] 2025-07-27 22:03:30,234 | INFO     | 
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | job summary report
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | --------------------------------------------------
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | PanDA job id: 6747411254
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | task id: 45743349
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | errors: (none)
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | pilot state: finished 
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | transexitcode: 0
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | exeerrorcode: 0
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | exeerrordiag: 
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | exitcode: 0
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | exitmsg: OK
[2025-07-27 18:04:03] 2025-07-27 22:03:30,235 | INFO     | cpuconsumptiontime: 37113 s
[2025-07-27 18:04:03] 2025-07-27 22:03:30,236 | INFO     | nevents: 400
[2025-07-27 18:04:03] 2025-07-27 22:03:30,236 | INFO     | neventsw: 0
[2025-07-27 18:04:03] 2025-07-27 22:03:30,236 | INFO     | pid: 3926805
[2025-07-27 18:04:03] 2025-07-27 22:03:30,236 | INFO     | pgrp: 3926805
[2025-07-27 18:04:03] 2025-07-27 22:03:30,236 | INFO     | corecount: 8
[2025-07-27 18:04:03] 2025-07-27 22:03:30,236 | INFO     | event service: False
[2025-07-27 18:04:03] 2025-07-27 22:03:30,236 | INFO     | sizes: {0: 2397242, 1: 2397497, 6: 2397759, 12: 2397787, 5854: 2424409, 5855: 2433407, 5858: 2433591, 5869: 2433785}
[2025-07-27 18:04:03] 2025-07-27 22:03:30,236 | INFO     | --------------------------------------------------
[2025-07-27 18:04:03] 2025-07-27 22:03:30,236 | INFO     | 
[2025-07-27 18:04:03] 2025-07-27 22:03:30,236 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 18:04:03] 2025-07-27 22:03:30,282 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,283 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,284 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,284 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:04:03] 2025-07-27 22:03:30,284 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,284 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:04:03] 2025-07-27 22:03:30,284 | INFO     | job 6747411254 has completed (purged errors)
[2025-07-27 18:04:03] 2025-07-27 22:03:30,284 | INFO     | overall cleanup function is called
[2025-07-27 18:04:03] 2025-07-27 22:03:31,292 | INFO     | --- collectZombieJob: --- 10, [3926805]
[2025-07-27 18:04:03] 2025-07-27 22:03:31,293 | INFO     | zombie collector waiting for pid 3926805
[2025-07-27 18:04:03] 2025-07-27 22:03:31,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:04:03] 2025-07-27 22:03:31,294 | INFO     | collected zombie processes
[2025-07-27 18:04:03] 2025-07-27 22:03:31,294 | INFO     | will attempt to kill all subprocesses of pid=3926805
[2025-07-27 18:04:03] 2025-07-27 22:03:31,880 | INFO     | process IDs to be killed: [3926805] (in reverse order)
[2025-07-27 18:04:03] 2025-07-27 22:03:32,032 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:04:03] 2025-07-27 22:03:32,033 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:04:03] 2025-07-27 22:03:32,051 | INFO     | did not find any defunct processes belonging to 3926805
[2025-07-27 18:04:03] 2025-07-27 22:03:32,069 | INFO     | did not find any defunct processes belonging to 3926805
[2025-07-27 18:04:03] 2025-07-27 22:03:32,070 | INFO     | ready for new job
[2025-07-27 18:04:03] 2025-07-27 22:03:32,070 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:04:03] 2025-07-27 22:03:32,071 | INFO     | ***************************************
[2025-07-27 18:04:03] 2025-07-27 22:03:32,071 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:04:03] 2025-07-27 22:03:32,071 | INFO     | ***************************************
[2025-07-27 18:04:03] 2025-07-27 22:03:32,071 | INFO     | 
[2025-07-27 18:04:03] 2025-07-27 22:03:32,077 | INFO     | architecture information:
[2025-07-27 18:04:03] 2025-07-27 22:03:32,077 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:04:03] 2025-07-27 22:03:32,094 | INFO     | cat /etc/os-release:
[2025-07-27 18:04:03] NAME="CentOS Linux"
[2025-07-27 18:04:03] VERSION="7 (Core)"
[2025-07-27 18:04:03] ID="centos"
[2025-07-27 18:04:03] ID_LIKE="rhel fedora"
[2025-07-27 18:04:03] VERSION_ID="7"
[2025-07-27 18:04:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:04:03] ANSI_COLOR="0;31"
[2025-07-27 18:04:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:04:03] HOME_URL="https://www.centos.org/"
[2025-07-27 18:04:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:04:03] 
[2025-07-27 18:04:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:04:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:04:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:04:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:04:03] 
[2025-07-27 18:04:03] 2025-07-27 22:03:32,095 | INFO     | ***************************************
[2025-07-27 18:04:03] 2025-07-27 22:03:32,601 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 18:04:03] 2025-07-27 22:03:32,634 | INFO     | sufficient remaining disk space (128986382336 B)
[2025-07-27 18:04:03] 2025-07-27 22:03:32,634 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:04:03] 2025-07-27 22:03:32,634 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:04:03] 2025-07-27 22:03:32,634 | INFO     | update_server=False
[2025-07-27 18:04:03] 2025-07-27 22:03:32,634 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:04:03] 2025-07-27 22:03:32,635 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:04:03] 2025-07-27 22:03:32,635 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:04:03] 2025-07-27 22:03:32,635 | INFO     | aborting loop
[2025-07-27 18:04:03] 2025-07-27 22:03:32,678 | INFO     | all data control threads have been joined
[2025-07-27 18:04:03] 2025-07-27 22:03:33,640 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:33,641 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:33,684 | INFO     | [data] control thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:33,851 | INFO     | all job control threads have been joined
[2025-07-27 18:04:03] 2025-07-27 22:03:33,886 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:33,914 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:34,079 | INFO     | all payload control threads have been joined
[2025-07-27 18:04:03] 2025-07-27 22:03:34,177 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:34,189 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:34,274 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:34,607 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:04:03] 2025-07-27 22:03:34,641 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:34,651 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:34,836 | INFO     | [job] validate thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:34,857 | INFO     | [job] control thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:34,865 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:04:03] 2025-07-27 22:03:35,085 | INFO     | [payload] control thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:35,871 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:38,614 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:43,126 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:04:03] 2025-07-27 22:03:44,132 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:04:03] 2025-07-27 22:03:45,099 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140080179181376)>', '<ExcThread(monitor, started 140079527872256)>']
[2025-07-27 18:04:03] 2025-07-27 22:03:50,125 | INFO     | all workflow threads have been joined
[2025-07-27 18:04:03] 2025-07-27 22:03:50,127 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:04:03] 2025-07-27 22:03:50,132 | INFO     | traces error code: 0
[2025-07-27 18:04:03] 2025-07-27 22:03:50,132 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:04:03] 2025-07-27 22:04:03,299 | INFO     | PID=3907449 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:04:03] 2025-07-27 22:04:03,300 | INFO     | .. there are 30 such processes running
[2025-07-27 18:04:03] 2025-07-27 22:04:03,301 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:04:03] 2025-07-27 22:04:03,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:04:03] 2025-07-27 22:04:03,301 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:04:03] 2025-07-27 22:04:03,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:04:03] 2025-07-27 22:04:03,301 | INFO     | [monitor] control thread has ended
[2025-07-27 18:04:03] 2025-07-27 22:04:03,509 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:04:03] 2025-07-27 22:04:03,525 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:04:03] 2025-07-27 22:04:03,532 [wrapper] pilotpid: 3907449
[2025-07-27 18:04:03] 2025-07-27 22:04:03,538 [wrapper] Pilot exit status: 0
[2025-07-27 18:04:03] 2025-07-27 22:04:03,602 [wrapper] pandaids: 6747411254
[2025-07-27 18:04:03] 2025-07-27 22:04:03,748 [wrapper] cleanup supervisor_pilot  248546 3907450
[2025-07-27 18:04:03] 2025-07-27 22:04:03,751 [wrapper] Test setup, not cleaning
[2025-07-27 18:04:03] 2025-07-27 22:04:03,754 [wrapper] apfmon messages muted
[2025-07-27 18:04:03] 2025-07-27 22:04:03,756 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:04:03] 2025-07-27 22:04:03,759 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:04:03]  *** Error codes and diagnostics ***
[2025-07-27 18:04:03]     "exeErrorCode": 0,
[2025-07-27 18:04:03]     "exeErrorDiag": "",
[2025-07-27 18:04:03]     "pilotErrorCode": 0,
[2025-07-27 18:04:03]     "pilotErrorDiag": "",
[2025-07-27 18:04:03]  *** Listing of results directory ***
[2025-07-27 18:04:03] total 347272
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 07:59 pilot3.tar.gz
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 08:32 queuedata.json
[2025-07-27 18:04:03] -rwx------. 1 boincer umatlas     36292 Jul 27 08:33 runpilot2-wrapper.sh
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:04:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:25 run_atlas
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:25 job.xml
[2025-07-27 18:04:03] -rw-r--r--. 2 boincer umatlas 142445039 Jul 27 16:25 EVNT.45743347._002689.pool.root.1
[2025-07-27 18:04:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:25 start_atlas.sh
[2025-07-27 18:04:03] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:25 shared
[2025-07-27 18:04:03] -rw-r--r--. 2 boincer umatlas    542883 Jul 27 16:25 input.tar.gz
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:25 boinc_lockfile
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas      2560 Jul 27 16:25 pandaJob.out
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas    980109 Jul 27 16:25 agis_schedconf.cvmfs.json
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:25 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:04:03] drwx------. 4 boincer umatlas      4096 Jul 27 16:25 pilot3
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas      6941 Jul 27 17:57 init_data.xml
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas       530 Jul 27 18:02 boinc_task_state.xml
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas 207562823 Jul 27 18:02 HITS.45743349._048491.pool.root.1
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas      1035 Jul 27 18:03 memory_monitor_summary.json
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas    304046 Jul 27 18:03 log.45743349._048491.job.log.tgz.1
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas      7770 Jul 27 18:03 heartbeat.json
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:04 boinc_mmap_file
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas        27 Jul 27 18:04 wrapper_checkpoint.txt
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas       823 Jul 27 18:04 pilotlog.txt
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas        95 Jul 27 18:04 pilot_heartbeat.json
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas    559070 Jul 27 18:04 log.45743349._048491.job.log.1
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas       357 Jul 27 18:04 output.list
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:04 runtime_log
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas    880640 Jul 27 18:04 result.tar.gz
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas       652 Jul 27 18:04 xdoLDmNkF07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCHVLDmlJHtCn.diag
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 18:04 runtime_log.err
[2025-07-27 18:04:03] -rw-r--r--. 1 boincer umatlas     22092 Jul 27 18:04 stderr.txt
[2025-07-27 18:04:03] HITS file was successfully produced:
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas 207562823 Jul 27 18:02 shared/HITS.pool.root.1
[2025-07-27 18:04:03]  *** Contents of shared directory: ***
[2025-07-27 18:04:03] total 343220
[2025-07-27 18:04:03] -rw-r--r--. 2 boincer umatlas 142445039 Jul 27 16:25 ATLAS.root_0
[2025-07-27 18:04:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:25 start_atlas.sh
[2025-07-27 18:04:03] -rw-r--r--. 2 boincer umatlas    542883 Jul 27 16:25 input.tar.gz
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas 207562823 Jul 27 18:02 HITS.pool.root.1
[2025-07-27 18:04:03] -rw-------. 1 boincer umatlas    880640 Jul 27 18:04 result.tar.gz
18:04:05 (3900836): run_atlas exited; CPU time 37287.603540
18:04:05 (3900836): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN