Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:27:10 (1047656): wrapper (7.7.26015): starting
16:27:10 (1047656): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 16:27:10] Arguments: --nthreads 8
[2025-07-27 16:27:10] Threads: 8
[2025-07-27 16:27:10] Checking for CVMFS
[2025-07-27 16:27:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:27:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:27:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:27:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:27:11] 2.12.6.0 2659555 18860 343556 148823 2 64 17136207 32935936 11888 16776704 0 51796317 99.672 91224220 24093 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 16:27:11] CVMFS is ok
[2025-07-27 16:27:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:27:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:27:11] Further information can be found at the LHC@home message board.
[2025-07-27 16:27:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:27:11] Checking for apptainer binary...
[2025-07-27 16:27:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:27:11] Running /usr/bin/apptainer --version
[2025-07-27 16:27:11] apptainer version 1.4.1-1.el9
[2025-07-27 16:27:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:27:11] c6-4-5-2.aglt2.org
[2025-07-27 16:27:11] apptainer works
[2025-07-27 16:27:11] Set ATHENA_PROC_NUMBER=8
[2025-07-27 16:27:11] Set ATHENA_CORE_NUMBER=8
[2025-07-27 16:27:11] Starting ATLAS job with PandaID=6747130130
[2025-07-27 16:27:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:11:45]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:11:45] 2025-07-27 22:11:08,467 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:11:45] 2025-07-27 22:11:10,769 | INFO     | monitor loop #455: job 0:6747130130 is in state 'finished'
[2025-07-27 18:11:45] 2025-07-27 22:11:10,769 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:11:45] 2025-07-27 22:11:12,738 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 18:11:45] 2025-07-27 22:11:12,745 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3017.0543749999997
[2025-07-27 18:11:45] 2025-07-27 22:11:12,754 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747130130/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:11:45] 2025-07-27 22:11:12,754 | INFO     | extracted standard info from prmon json
[2025-07-27 18:11:45] 2025-07-27 22:11:12,754 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:11:45] 2025-07-27 22:11:12,754 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:11:45] 2025-07-27 22:11:12,755 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:11:45] 2025-07-27 22:11:12,755 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:11:45] 2025-07-27 22:11:12,757 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:11:45] 2025-07-27 22:11:12,757 | INFO     | sum of square deviations: 329031285.5
[2025-07-27 18:11:45] 2025-07-27 22:11:12,757 | INFO     | sum of deviations: -11816250403.0
[2025-07-27 18:11:45] 2025-07-27 22:11:12,757 | INFO     | mean x: 1753651161.5
[2025-07-27 18:11:45] 2025-07-27 22:11:12,758 | INFO     | mean y: 2257422.6470588236
[2025-07-27 18:11:45] 2025-07-27 22:11:12,758 | INFO     | -- intersect: 62979798334.31757
[2025-07-27 18:11:45] 2025-07-27 22:11:12,758 | INFO     | intersect: 62979798334.31757
[2025-07-27 18:11:45] 2025-07-27 22:11:12,758 | INFO     | chi2: 2.5810361092346974
[2025-07-27 18:11:45] 2025-07-27 22:11:12,758 | INFO     | sum of square deviations: 282974608.0
[2025-07-27 18:11:45] 2025-07-27 22:11:12,758 | INFO     | sum of deviations: -4632924257.999997
[2025-07-27 18:11:45] 2025-07-27 22:11:12,758 | INFO     | mean x: 1753651009.0
[2025-07-27 18:11:45] 2025-07-27 22:11:12,759 | INFO     | mean y: 2280505.402061856
[2025-07-27 18:11:45] 2025-07-27 22:11:12,759 | INFO     | -- intersect: 28713451295.900234
[2025-07-27 18:11:45] 2025-07-27 22:11:12,759 | INFO     | intersect: 28713451295.900234
[2025-07-27 18:11:45] 2025-07-27 22:11:12,759 | INFO     | chi2: 1.940000201858385
[2025-07-27 18:11:45] 2025-07-27 22:11:12,759 | INFO     | current chi2=1.940000201858385 (change=24.836378889963914 %)
[2025-07-27 18:11:45] 2025-07-27 22:11:12,759 | INFO     | right removable region: 96
[2025-07-27 18:11:45] 2025-07-27 22:11:12,759 | INFO     | sum of square deviations: 282974608.0
[2025-07-27 18:11:45] 2025-07-27 22:11:12,759 | INFO     | sum of deviations: -27068181053.0
[2025-07-27 18:11:45] 2025-07-27 22:11:12,760 | INFO     | mean x: 1753651314.0
[2025-07-27 18:11:45] 2025-07-27 22:11:12,760 | INFO     | mean y: 2307024.1134020616
[2025-07-27 18:11:45] 2025-07-27 22:11:12,760 | INFO     | -- intersect: 167749341313.43506
[2025-07-27 18:11:45] 2025-07-27 22:11:12,760 | INFO     | intersect: 167749341313.43506
[2025-07-27 18:11:45] 2025-07-27 22:11:12,760 | INFO     | chi2: 0.9106418422381557
[2025-07-27 18:11:45] 2025-07-27 22:11:12,760 | INFO     | current chi2=0.9106418422381557 (change=64.71797356960768 %)
[2025-07-27 18:11:45] 2025-07-27 22:11:12,760 | INFO     | sum of square deviations: 241429643.0
[2025-07-27 18:11:45] 2025-07-27 22:11:12,760 | INFO     | sum of deviations: -26300389089.5
[2025-07-27 18:11:45] 2025-07-27 22:11:12,760 | INFO     | mean x: 1753651466.5
[2025-07-27 18:11:45] 2025-07-27 22:11:12,761 | INFO     | mean y: 2303938.1413043477
[2025-07-27 18:11:45] 2025-07-27 22:11:12,761 | INFO     | -- intersect: 191038149094.58
[2025-07-27 18:11:45] 2025-07-27 22:11:12,761 | INFO     | intersect: 191038149094.58
[2025-07-27 18:11:45] 2025-07-27 22:11:12,761 | INFO     | chi2: 0.8521194465666488
[2025-07-27 18:11:45] 2025-07-27 22:11:12,761 | INFO     | current chi2=0.8521194465666488 (change=6.426499745242518 %)
[2025-07-27 18:11:45] 2025-07-27 22:11:12,761 | INFO     | left removable region: 20
[2025-07-27 18:11:45] 2025-07-27 22:11:12,761 | INFO     | sum of square deviations: 136095575.0
[2025-07-27 18:11:45] 2025-07-27 22:11:12,761 | INFO     | sum of deviations: -13757956866.5
[2025-07-27 18:11:45] 2025-07-27 22:11:12,761 | INFO     | mean x: 1753651588.5
[2025-07-27 18:11:45] 2025-07-27 22:11:12,761 | INFO     | mean y: 2308935.1710526315
[2025-07-27 18:11:45] 2025-07-27 22:11:12,762 | INFO     | -- intersect: 177279659160.93857
[2025-07-27 18:11:45] 2025-07-27 22:11:12,762 | INFO     | intersect: 177279659160.93857
[2025-07-27 18:11:45] 2025-07-27 22:11:12,762 | INFO     | chi2: 0.15872629489571854
[2025-07-27 18:11:45] 2025-07-27 22:11:12,762 | INFO     | -- intersect: 177279659160.93857
[2025-07-27 18:11:45] 2025-07-27 22:11:12,762 | INFO     | current memory leak: -101.09 B/s (using 76 data points, chi2=0.16)
[2025-07-27 18:11:45] 2025-07-27 22:11:12,762 | INFO     | could have reported an average CPU frequency of 2907 MHz (7 samples)
[2025-07-27 18:11:45] 2025-07-27 22:11:12,762 | INFO     | ..............................
[2025-07-27 18:11:45] 2025-07-27 22:11:12,762 | INFO     | . Timing measurements:
[2025-07-27 18:11:45] 2025-07-27 22:11:12,763 | INFO     | . get job = 0 s
[2025-07-27 18:11:45] 2025-07-27 22:11:12,763 | INFO     | . initial setup = 2 s
[2025-07-27 18:11:45] 2025-07-27 22:11:12,763 | INFO     | . payload setup = 10 s
[2025-07-27 18:11:45] 2025-07-27 22:11:12,763 | INFO     | . stage-in = 0 s
[2025-07-27 18:11:45] 2025-07-27 22:11:12,763 | INFO     | . payload execution = 6187 s
[2025-07-27 18:11:45] 2025-07-27 22:11:12,763 | INFO     | . stage-out = 0 s
[2025-07-27 18:11:45] 2025-07-27 22:11:12,763 | INFO     | . log creation = 0 s
[2025-07-27 18:11:45] 2025-07-27 22:11:12,763 | INFO     | ..............................
[2025-07-27 18:11:45] 2025-07-27 22:11:13,222 | INFO     | 
[2025-07-27 18:11:45] 2025-07-27 22:11:13,222 | INFO     | job summary report
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | --------------------------------------------------
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | PanDA job id: 6747130130
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | task id: 45743349
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | errors: (none)
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | pilot state: finished 
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | transexitcode: 0
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | exeerrorcode: 0
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | exeerrordiag: 
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | exitcode: 0
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | exitmsg: OK
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | cpuconsumptiontime: 44081 s
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | nevents: 400
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | neventsw: 0
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | pid: 1059593
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | pgrp: 1059593
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | corecount: 8
[2025-07-27 18:11:45] 2025-07-27 22:11:13,223 | INFO     | event service: False
[2025-07-27 18:11:45] 2025-07-27 22:11:13,224 | INFO     | sizes: {0: 2396597, 1: 2397453, 7: 2397715, 12: 2397743, 6202: 2424526, 6203: 2433524, 6205: 2433708, 6209: 2433902}
[2025-07-27 18:11:45] 2025-07-27 22:11:13,224 | INFO     | --------------------------------------------------
[2025-07-27 18:11:45] 2025-07-27 22:11:13,224 | INFO     | 
[2025-07-27 18:11:45] 2025-07-27 22:11:13,224 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 18:11:45] 2025-07-27 22:11:13,245 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,246 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,246 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,246 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,246 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,246 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,246 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,246 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,246 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,247 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,247 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,247 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,247 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,247 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,247 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,247 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:11:45] 2025-07-27 22:11:13,247 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,247 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:11:45] 2025-07-27 22:11:13,247 | INFO     | job 6747130130 has completed (purged errors)
[2025-07-27 18:11:45] 2025-07-27 22:11:13,248 | INFO     | overall cleanup function is called
[2025-07-27 18:11:45] 2025-07-27 22:11:14,256 | INFO     | --- collectZombieJob: --- 10, [1059593]
[2025-07-27 18:11:45] 2025-07-27 22:11:14,257 | INFO     | zombie collector waiting for pid 1059593
[2025-07-27 18:11:45] 2025-07-27 22:11:14,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:11:45] 2025-07-27 22:11:14,257 | INFO     | collected zombie processes
[2025-07-27 18:11:45] 2025-07-27 22:11:14,257 | INFO     | will attempt to kill all subprocesses of pid=1059593
[2025-07-27 18:11:45] 2025-07-27 22:11:14,530 | INFO     | process IDs to be killed: [1059593] (in reverse order)
[2025-07-27 18:11:45] 2025-07-27 22:11:14,614 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:11:45] 2025-07-27 22:11:14,615 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:11:45] 2025-07-27 22:11:14,625 | INFO     | did not find any defunct processes belonging to 1059593
[2025-07-27 18:11:45] 2025-07-27 22:11:14,634 | INFO     | did not find any defunct processes belonging to 1059593
[2025-07-27 18:11:45] 2025-07-27 22:11:14,634 | INFO     | ready for new job
[2025-07-27 18:11:45] 2025-07-27 22:11:14,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:11:45] 2025-07-27 22:11:14,636 | INFO     | ***************************************
[2025-07-27 18:11:45] 2025-07-27 22:11:14,636 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:11:45] 2025-07-27 22:11:14,636 | INFO     | ***************************************
[2025-07-27 18:11:45] 2025-07-27 22:11:14,636 | INFO     | 
[2025-07-27 18:11:45] 2025-07-27 22:11:14,651 | INFO     | architecture information:
[2025-07-27 18:11:45] 2025-07-27 22:11:14,652 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:11:45] 2025-07-27 22:11:14,668 | INFO     | cat /etc/os-release:
[2025-07-27 18:11:45] NAME="CentOS Linux"
[2025-07-27 18:11:45] VERSION="7 (Core)"
[2025-07-27 18:11:45] ID="centos"
[2025-07-27 18:11:45] ID_LIKE="rhel fedora"
[2025-07-27 18:11:45] VERSION_ID="7"
[2025-07-27 18:11:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:11:45] ANSI_COLOR="0;31"
[2025-07-27 18:11:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:11:45] HOME_URL="https://www.centos.org/"
[2025-07-27 18:11:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:11:45] 
[2025-07-27 18:11:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:11:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:11:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:11:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:11:45] 
[2025-07-27 18:11:45] 2025-07-27 22:11:14,668 | INFO     | ***************************************
[2025-07-27 18:11:45] 2025-07-27 22:11:15,171 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 18:11:45] 2025-07-27 22:11:15,185 | INFO     | sufficient remaining disk space (75942068224 B)
[2025-07-27 18:11:45] 2025-07-27 22:11:15,185 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:11:45] 2025-07-27 22:11:15,185 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:11:45] 2025-07-27 22:11:15,185 | INFO     | update_server=False
[2025-07-27 18:11:45] 2025-07-27 22:11:15,185 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:11:45] 2025-07-27 22:11:15,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:11:45] 2025-07-27 22:11:15,186 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:11:45] 2025-07-27 22:11:15,186 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:11:45] 2025-07-27 22:11:15,186 | INFO     | aborting loop
[2025-07-27 18:11:45] 2025-07-27 22:11:15,577 | INFO     | all job control threads have been joined
[2025-07-27 18:11:45] 2025-07-27 22:11:15,961 | INFO     | all payload control threads have been joined
[2025-07-27 18:11:45] 2025-07-27 22:11:15,974 | INFO     | all data control threads have been joined
[2025-07-27 18:11:45] 2025-07-27 22:11:16,191 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:16,191 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:16,340 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:16,578 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:16,582 | INFO     | [job] control thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:16,819 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:16,944 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:16,948 | INFO     | [job] validate thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:16,966 | INFO     | [payload] control thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:16,980 | INFO     | [data] control thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:17,009 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:17,192 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:17,580 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:17,849 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:11:45] 2025-07-27 22:11:18,854 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:19,192 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:25,766 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:11:45] 2025-07-27 22:11:26,771 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:11:45] 2025-07-27 22:11:27,869 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642057062208)>', '<ExcThread(monitor, started 139641558640384)>']
[2025-07-27 18:11:45] 2025-07-27 22:11:32,894 | INFO     | all workflow threads have been joined
[2025-07-27 18:11:45] 2025-07-27 22:11:32,895 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:11:45] 2025-07-27 22:11:32,896 | INFO     | traces error code: 0
[2025-07-27 18:11:45] 2025-07-27 22:11:32,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:11:45] 2025-07-27 22:11:45,469 | INFO     | PID=1052214 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:11:45] 2025-07-27 22:11:45,470 | INFO     | .. there are 14 such processes running
[2025-07-27 18:11:45] 2025-07-27 22:11:45,471 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:11:45] 2025-07-27 22:11:45,471 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:11:45] 2025-07-27 22:11:45,471 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:11:45] 2025-07-27 22:11:45,471 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:11:45] 2025-07-27 22:11:45,471 | INFO     | [monitor] control thread has ended
[2025-07-27 18:11:45] 2025-07-27 22:11:45,626 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:11:45] 2025-07-27 22:11:45,630 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:11:45] 2025-07-27 22:11:45,635 [wrapper] pilotpid: 1052214
[2025-07-27 18:11:45] 2025-07-27 22:11:45,638 [wrapper] Pilot exit status: 0
[2025-07-27 18:11:45] 2025-07-27 22:11:45,652 [wrapper] pandaids: 6747130130
[2025-07-27 18:11:45] 2025-07-27 22:11:45,709 [wrapper] cleanup supervisor_pilot 1386456 1052215
[2025-07-27 18:11:45] 2025-07-27 22:11:45,715 [wrapper] Test setup, not cleaning
[2025-07-27 18:11:45] 2025-07-27 22:11:45,720 [wrapper] apfmon messages muted
[2025-07-27 18:11:45] 2025-07-27 22:11:45,723 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:11:45] 2025-07-27 22:11:45,727 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:11:45]  *** Error codes and diagnostics ***
[2025-07-27 18:11:45]     "exeErrorCode": 0,
[2025-07-27 18:11:45]     "exeErrorDiag": "",
[2025-07-27 18:11:45]     "pilotErrorCode": 0,
[2025-07-27 18:11:45]     "pilotErrorDiag": "",
[2025-07-27 18:11:45]  *** Listing of results directory ***
[2025-07-27 18:11:45] total 432556
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 05:06 pilot3.tar.gz
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 05:40 queuedata.json
[2025-07-27 18:11:45] -rwx------. 1 boincer umatlas     36292 Jul 27 05:42 runpilot2-wrapper.sh
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:11:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:27 run_atlas
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:27 job.xml
[2025-07-27 18:11:45] -rw-r--r--. 2 boincer umatlas 232157076 Jul 27 16:27 EVNT.45743347._001661.pool.root.1
[2025-07-27 18:11:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:27 start_atlas.sh
[2025-07-27 18:11:45] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:27 shared
[2025-07-27 18:11:45] -rw-r--r--. 2 boincer umatlas    542905 Jul 27 16:27 input.tar.gz
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:27 boinc_lockfile
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 16:27 pandaJob.out
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas    980109 Jul 27 16:27 agis_schedconf.cvmfs.json
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:27 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:11:45] drwx------. 4 boincer umatlas      4096 Jul 27 16:27 pilot3
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas      6855 Jul 27 18:02 init_data.xml
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas 205040004 Jul 27 18:10 HITS.45743349._046615.pool.root.1
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas       530 Jul 27 18:10 boinc_task_state.xml
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas      1035 Jul 27 18:11 memory_monitor_summary.json
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas    333386 Jul 27 18:11 log.45743349._046615.job.log.tgz.1
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas      7830 Jul 27 18:11 heartbeat.json
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:11 boinc_mmap_file
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas        27 Jul 27 18:11 wrapper_checkpoint.txt
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas        95 Jul 27 18:11 pilot_heartbeat.json
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas       823 Jul 27 18:11 pilotlog.txt
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas    599070 Jul 27 18:11 log.45743349._046615.job.log.1
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas       357 Jul 27 18:11 output.list
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:11 runtime_log
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas    952320 Jul 27 18:11 result.tar.gz
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas       652 Jul 27 18:11 XgAODmW4C07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwwULDmIo5Wlm.diag
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 18:11 runtime_log.err
[2025-07-27 18:11:45] -rw-r--r--. 1 boincer umatlas     21224 Jul 27 18:11 stderr.txt
[2025-07-27 18:11:45] HITS file was successfully produced:
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas 205040004 Jul 27 18:10 shared/HITS.pool.root.1
[2025-07-27 18:11:45]  *** Contents of shared directory: ***
[2025-07-27 18:11:45] total 428436
[2025-07-27 18:11:45] -rw-r--r--. 2 boincer umatlas 232157076 Jul 27 16:27 ATLAS.root_0
[2025-07-27 18:11:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:27 start_atlas.sh
[2025-07-27 18:11:45] -rw-r--r--. 2 boincer umatlas    542905 Jul 27 16:27 input.tar.gz
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas 205040004 Jul 27 18:10 HITS.pool.root.1
[2025-07-27 18:11:45] -rw-------. 1 boincer umatlas    952320 Jul 27 18:11 result.tar.gz
18:11:47 (1047656): run_atlas exited; CPU time 44234.138543
18:11:47 (1047656): called boinc_finish(0)

</stderr_txt>
]]>

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