Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:18:48 (191811): wrapper (7.7.26015): starting
16:18:48 (191811): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 16:18:48] Arguments: --nthreads 8
[2025-07-27 16:18:48] Threads: 8
[2025-07-27 16:18:48] Checking for CVMFS
[2025-07-27 16:18:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:18:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:18:49] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:18:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:18:49] 2.12.6.0 3576101 18834 371148 148823 0 65 26254786 40960000 14845 16776704 0 62602868 99.864 68535539 24675 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 16:18:49] CVMFS is ok
[2025-07-27 16:18:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:18:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:18:49] Further information can be found at the LHC@home message board.
[2025-07-27 16:18:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:18:49] Checking for apptainer binary...
[2025-07-27 16:18:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:18:49] Running /usr/bin/apptainer --version
[2025-07-27 16:18:49] apptainer version 1.4.1-1.el9
[2025-07-27 16:18:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:18:49] c7-11-12.aglt2.org
[2025-07-27 16:18:49] apptainer works
[2025-07-27 16:18:49] Set ATHENA_PROC_NUMBER=8
[2025-07-27 16:18:49] Set ATHENA_CORE_NUMBER=8
[2025-07-27 16:18:49] Starting ATLAS job with PandaID=6747499963
[2025-07-27 16:18:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:46:38]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:46:38]  protocol_id=None
[2025-07-27 17:46:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:46:38]  replicas=None
[2025-07-27 17:46:38]  scope=mc23_13p6TeV
[2025-07-27 17:46:38]  status=None
[2025-07-27 17:46:38]  status_code=0
[2025-07-27 17:46:38]  storage_token=
[2025-07-27 17:46:38]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747499963/log.45743349._051348.job.log.tgz.1
[2025-07-27 17:46:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1c/9e/log.45743349._051348.job.log.tgz.1
[2025-07-27 17:46:38]  workdir=None
[2025-07-27 17:46:38] ]
[2025-07-27 17:46:38] 2025-07-27 21:45:59,312 | INFO     | transferring file log.45743349._051348.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747499963/log.45743349._051348.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:46:38] 2025-07-27 21:45:59,312 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747499963/log.45743349._051348.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._051348.job
[2025-07-27 17:46:38] 2025-07-27 21:45:59,331 | INFO     | adding to output.list: log.45743349._051348.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1c/9e/log.45743349._051348.job.log.tg
[2025-07-27 17:46:38] 2025-07-27 21:45:59,332 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:46:38] 2025-07-27 21:45:59,332 | INFO     | summary of transferred files:
[2025-07-27 17:46:38] 2025-07-27 21:45:59,332 | INFO     |  -- lfn=log.45743349._051348.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:46:38] 2025-07-27 21:45:59,332 | INFO     | stage-out finished correctly
[2025-07-27 17:46:38] 2025-07-27 21:45:59,409 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:46:38] 2025-07-27 21:45:59,495 | INFO     | monitor loop #384: job 0:6747499963 is in state 'finished'
[2025-07-27 17:46:38] 2025-07-27 21:45:59,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:46:38] 2025-07-27 21:46:00,081 | INFO     | job 6747499963 has state=finished
[2025-07-27 17:46:38] 2025-07-27 21:46:00,081 | INFO     | preparing for final server update for job 6747499963 in state='finished'
[2025-07-27 17:46:38] 2025-07-27 21:46:00,082 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:46:38] 2025-07-27 21:46:00,082 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:46:38] 2025-07-27 21:46:00,082 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:46:38] 2025-07-27 21:46:00,082 | INFO     | job 6747499963 has finished - writing final server update
[2025-07-27 17:46:38] 2025-07-27 21:46:00,082 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:46:38] 2025-07-27 21:46:00,086 | INFO     | executing command: lscpu
[2025-07-27 17:46:38] 2025-07-27 21:46:00,149 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:46:38] 2025-07-27 21:46:02,000 | INFO     | monitor loop #385: job 0:6747499963 is in state 'finished'
[2025-07-27 17:46:38] 2025-07-27 21:46:02,000 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:46:38] 2025-07-27 21:46:03,944 | INFO     | PID=195878 has CPU usage=11.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:46:38] 2025-07-27 21:46:03,944 | INFO     | .. there are 23 such processes running
[2025-07-27 17:46:38] 2025-07-27 21:46:04,504 | INFO     | monitor loop #386: job 0:6747499963 is in state 'finished'
[2025-07-27 17:46:38] 2025-07-27 21:46:04,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:46:38] 2025-07-27 21:46:05,126 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 17:46:38] 2025-07-27 21:46:05,131 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3254.333390625
[2025-07-27 17:46:38] 2025-07-27 21:46:05,141 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747499963/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:46:38] 2025-07-27 21:46:05,142 | INFO     | extracted standard info from prmon json
[2025-07-27 17:46:38] 2025-07-27 21:46:05,142 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:46:38] 2025-07-27 21:46:05,142 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:46:38] 2025-07-27 21:46:05,143 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:46:38] 2025-07-27 21:46:05,143 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:46:38] 2025-07-27 21:46:05,145 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:46:38] 2025-07-27 21:46:05,145 | INFO     | sum of square deviations: 147126479.5
[2025-07-27 17:46:38] 2025-07-27 21:46:05,145 | INFO     | sum of deviations: -16279663346.999998
[2025-07-27 17:46:38] 2025-07-27 21:46:05,145 | INFO     | mean x: 1753650228.5
[2025-07-27 17:46:38] 2025-07-27 21:46:05,145 | INFO     | mean y: 2403229.3846153845
[2025-07-27 17:46:38] 2025-07-27 21:46:05,146 | INFO     | -- intersect: 194045212147.2016
[2025-07-27 17:46:38] 2025-07-27 21:46:05,146 | INFO     | intersect: 194045212147.2016
[2025-07-27 17:46:38] 2025-07-27 21:46:05,146 | INFO     | chi2: 0.11461562681884085
[2025-07-27 17:46:38] 2025-07-27 21:46:05,146 | INFO     | -- intersect: 194045212147.2016
[2025-07-27 17:46:38] 2025-07-27 21:46:05,146 | INFO     | current memory leak: -110.65 B/s (using 78 data points, chi2=0.11)
[2025-07-27 17:46:38] 2025-07-27 21:46:05,146 | INFO     | could have reported an average CPU frequency of 3265 MHz (6 samples)
[2025-07-27 17:46:38] 2025-07-27 21:46:05,146 | INFO     | ..............................
[2025-07-27 17:46:38] 2025-07-27 21:46:05,147 | INFO     | . Timing measurements:
[2025-07-27 17:46:38] 2025-07-27 21:46:05,147 | INFO     | . get job = 0 s
[2025-07-27 17:46:38] 2025-07-27 21:46:05,147 | INFO     | . initial setup = 2 s
[2025-07-27 17:46:38] 2025-07-27 21:46:05,147 | INFO     | . payload setup = 8 s
[2025-07-27 17:46:38] 2025-07-27 21:46:05,147 | INFO     | . stage-in = 0 s
[2025-07-27 17:46:38] 2025-07-27 21:46:05,147 | INFO     | . payload execution = 5185 s
[2025-07-27 17:46:38] 2025-07-27 21:46:05,147 | INFO     | . stage-out = 0 s
[2025-07-27 17:46:38] 2025-07-27 21:46:05,147 | INFO     | . log creation = 0 s
[2025-07-27 17:46:38] 2025-07-27 21:46:05,147 | INFO     | ..............................
[2025-07-27 17:46:38] 2025-07-27 21:46:05,224 | INFO     | 
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | job summary report
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | --------------------------------------------------
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | PanDA job id: 6747499963
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | task id: 45743349
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | errors: (none)
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | pilot state: finished 
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | transexitcode: 0
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | exeerrorcode: 0
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | exeerrordiag: 
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | exitcode: 0
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | exitmsg: OK
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | cpuconsumptiontime: 37323 s
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | nevents: 400
[2025-07-27 17:46:38] 2025-07-27 21:46:05,225 | INFO     | neventsw: 0
[2025-07-27 17:46:38] 2025-07-27 21:46:05,226 | INFO     | pid: 204660
[2025-07-27 17:46:38] 2025-07-27 21:46:05,226 | INFO     | pgrp: 204660
[2025-07-27 17:46:38] 2025-07-27 21:46:05,226 | INFO     | corecount: 8
[2025-07-27 17:46:38] 2025-07-27 21:46:05,226 | INFO     | event service: False
[2025-07-27 17:46:38] 2025-07-27 21:46:05,226 | INFO     | sizes: {0: 2397253, 1: 2397452, 6: 2397714, 11: 2397742, 5198: 2424073, 5199: 2433255, 5205: 2433393}
[2025-07-27 17:46:38] 2025-07-27 21:46:05,226 | INFO     | --------------------------------------------------
[2025-07-27 17:46:38] 2025-07-27 21:46:05,226 | INFO     | 
[2025-07-27 17:46:38] 2025-07-27 21:46:05,226 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:46:38] 2025-07-27 21:46:05,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,247 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:46:38] 2025-07-27 21:46:05,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,249 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:46:38] 2025-07-27 21:46:05,249 | INFO     | job 6747499963 has completed (purged errors)
[2025-07-27 17:46:38] 2025-07-27 21:46:05,249 | INFO     | overall cleanup function is called
[2025-07-27 17:46:38] 2025-07-27 21:46:06,257 | INFO     | --- collectZombieJob: --- 10, [204660]
[2025-07-27 17:46:38] 2025-07-27 21:46:06,257 | INFO     | zombie collector waiting for pid 204660
[2025-07-27 17:46:38] 2025-07-27 21:46:06,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:46:38] 2025-07-27 21:46:06,257 | INFO     | collected zombie processes
[2025-07-27 17:46:38] 2025-07-27 21:46:06,257 | INFO     | will attempt to kill all subprocesses of pid=204660
[2025-07-27 17:46:38] 2025-07-27 21:46:06,565 | INFO     | process IDs to be killed: [204660] (in reverse order)
[2025-07-27 17:46:38] 2025-07-27 21:46:06,672 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:46:38] 2025-07-27 21:46:06,673 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:46:38] 2025-07-27 21:46:06,685 | INFO     | did not find any defunct processes belonging to 204660
[2025-07-27 17:46:38] 2025-07-27 21:46:06,694 | INFO     | did not find any defunct processes belonging to 204660
[2025-07-27 17:46:38] 2025-07-27 21:46:06,694 | INFO     | ready for new job
[2025-07-27 17:46:38] 2025-07-27 21:46:06,694 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:46:38] 2025-07-27 21:46:06,696 | INFO     | ***************************************
[2025-07-27 17:46:38] 2025-07-27 21:46:06,696 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:46:38] 2025-07-27 21:46:06,696 | INFO     | ***************************************
[2025-07-27 17:46:38] 2025-07-27 21:46:06,696 | INFO     | 
[2025-07-27 17:46:38] 2025-07-27 21:46:06,715 | INFO     | architecture information:
[2025-07-27 17:46:38] 2025-07-27 21:46:06,716 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:46:38] 2025-07-27 21:46:06,733 | INFO     | cat /etc/os-release:
[2025-07-27 17:46:38] NAME="CentOS Linux"
[2025-07-27 17:46:38] VERSION="7 (Core)"
[2025-07-27 17:46:38] ID="centos"
[2025-07-27 17:46:38] ID_LIKE="rhel fedora"
[2025-07-27 17:46:38] VERSION_ID="7"
[2025-07-27 17:46:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:46:38] ANSI_COLOR="0;31"
[2025-07-27 17:46:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:46:38] HOME_URL="https://www.centos.org/"
[2025-07-27 17:46:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:46:38] 
[2025-07-27 17:46:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:46:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:46:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:46:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:46:38] 
[2025-07-27 17:46:38] 2025-07-27 21:46:06,733 | INFO     | ***************************************
[2025-07-27 17:46:38] 2025-07-27 21:46:07,238 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:46:38] 2025-07-27 21:46:07,259 | INFO     | sufficient remaining disk space (86030417920 B)
[2025-07-27 17:46:38] 2025-07-27 21:46:07,260 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:46:38] 2025-07-27 21:46:07,260 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:46:38] 2025-07-27 21:46:07,260 | INFO     | update_server=False
[2025-07-27 17:46:38] 2025-07-27 21:46:07,260 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:46:38] 2025-07-27 21:46:07,428 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:46:38] 2025-07-27 21:46:07,920 | INFO     | all data control threads have been joined
[2025-07-27 17:46:38] 2025-07-27 21:46:08,015 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:46:38] 2025-07-27 21:46:08,015 | INFO     | aborting loop
[2025-07-27 17:46:38] 2025-07-27 21:46:08,265 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:08,443 | INFO     | all job control threads have been joined
[2025-07-27 17:46:38] 2025-07-27 21:46:08,484 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:08,560 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:08,691 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:08,739 | INFO     | all payload control threads have been joined
[2025-07-27 17:46:38] 2025-07-27 21:46:08,925 | INFO     | [data] control thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:09,021 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:09,375 | INFO     | [job] validate thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:09,382 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:09,437 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:09,453 | INFO     | [job] control thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:09,680 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:09,743 | INFO     | [payload] control thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:09,792 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:10,001 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:46:38] 2025-07-27 21:46:10,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:46:38] 2025-07-27 21:46:11,241 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:14,009 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:17,753 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:46:38] 2025-07-27 21:46:18,758 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:46:38] 2025-07-27 21:46:20,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139637660399424)>', '<ExcThread(monitor, started 139637020415744)>']
[2025-07-27 17:46:38] 2025-07-27 21:46:25,780 | INFO     | all workflow threads have been joined
[2025-07-27 17:46:38] 2025-07-27 21:46:25,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:46:38] 2025-07-27 21:46:25,781 | INFO     | traces error code: 0
[2025-07-27 17:46:38] 2025-07-27 21:46:25,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:46:38] 2025-07-27 21:46:38,408 | INFO     | PID=195878 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 17:46:38] 2025-07-27 21:46:38,410 | INFO     | .. there are 23 such processes running
[2025-07-27 17:46:38] 2025-07-27 21:46:38,410 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:46:38] 2025-07-27 21:46:38,410 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:46:38] 2025-07-27 21:46:38,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:46:38] 2025-07-27 21:46:38,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:46:38] 2025-07-27 21:46:38,410 | INFO     | [monitor] control thread has ended
[2025-07-27 17:46:38] 2025-07-27 21:46:38,522 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:46:38] 2025-07-27 21:46:38,526 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:46:38] 2025-07-27 21:46:38,531 [wrapper] pilotpid: 195878
[2025-07-27 17:46:38] 2025-07-27 21:46:38,535 [wrapper] Pilot exit status: 0
[2025-07-27 17:46:38] 2025-07-27 21:46:38,550 [wrapper] pandaids: 6747499963
[2025-07-27 17:46:38] 2025-07-27 21:46:38,636 [wrapper] cleanup supervisor_pilot  414971 195879
[2025-07-27 17:46:38] 2025-07-27 21:46:38,641 [wrapper] Test setup, not cleaning
[2025-07-27 17:46:38] 2025-07-27 21:46:38,646 [wrapper] apfmon messages muted
[2025-07-27 17:46:38] 2025-07-27 21:46:38,650 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:46:38] 2025-07-27 21:46:38,654 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:46:38]  *** Error codes and diagnostics ***
[2025-07-27 17:46:38]     "exeErrorCode": 0,
[2025-07-27 17:46:38]     "exeErrorDiag": "",
[2025-07-27 17:46:38]     "pilotErrorCode": 0,
[2025-07-27 17:46:38]     "pilotErrorDiag": "",
[2025-07-27 17:46:38]  *** Listing of results directory ***
[2025-07-27 17:46:38] total 347440
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 17:46:38] -rwx------. 1 boincer umatlas     36292 Jul 27 11:06 runpilot2-wrapper.sh
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:06 queuedata.json
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:46:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:18 run_atlas
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:18 job.xml
[2025-07-27 17:46:38] -rw-r--r--. 2 boincer umatlas 144429328 Jul 27 16:18 EVNT.45743347._002749.pool.root.1
[2025-07-27 17:46:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:18 start_atlas.sh
[2025-07-27 17:46:38] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:18 shared
[2025-07-27 17:46:38] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 16:18 input.tar.gz
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:18 boinc_lockfile
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 16:18 pandaJob.out
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas    980109 Jul 27 16:19 agis_schedconf.cvmfs.json
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:19 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:46:38] drwx------. 4 boincer umatlas      4096 Jul 27 16:19 pilot3
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:45 boinc_task_state.xml
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas 205829964 Jul 27 17:45 HITS.45743349._051348.pool.root.1
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas      1026 Jul 27 17:45 memory_monitor_summary.json
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas        95 Jul 27 17:45 pilot_heartbeat.json
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas      6897 Jul 27 17:45 init_data.xml
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas    311674 Jul 27 17:45 log.45743349._051348.job.log.tgz.1
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas      7771 Jul 27 17:46 heartbeat.json
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:46 boinc_mmap_file
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:46 wrapper_checkpoint.txt
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas       822 Jul 27 17:46 pilotlog.txt
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas    509839 Jul 27 17:46 log.45743349._051348.job.log.1
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas       357 Jul 27 17:46 output.list
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:46 runtime_log
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas    839680 Jul 27 17:46 result.tar.gz
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 17:46 runtime_log.err
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas       652 Jul 27 17:46 47GMDmX8H07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWdVLDm9Zh2Um.diag
[2025-07-27 17:46:38] -rw-r--r--. 1 boincer umatlas     21870 Jul 27 17:46 stderr.txt
[2025-07-27 17:46:38] HITS file was successfully produced:
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas 205829964 Jul 27 17:45 shared/HITS.pool.root.1
[2025-07-27 17:46:38]  *** Contents of shared directory: ***
[2025-07-27 17:46:38] total 343428
[2025-07-27 17:46:38] -rw-r--r--. 2 boincer umatlas 144429328 Jul 27 16:18 ATLAS.root_0
[2025-07-27 17:46:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:18 start_atlas.sh
[2025-07-27 17:46:38] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 16:18 input.tar.gz
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas 205829964 Jul 27 17:45 HITS.pool.root.1
[2025-07-27 17:46:38] -rw-------. 1 boincer umatlas    839680 Jul 27 17:46 result.tar.gz
17:46:40 (191811): run_atlas exited; CPU time 37376.922512
17:46:40 (191811): called boinc_finish(0)

</stderr_txt>
]]>

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