Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:20:22 (6929): wrapper (7.7.26015): starting
16:20:22 (6929): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:20:22] Arguments: --nthreads 12
[2025-07-27 16:20:22] Threads: 12
[2025-07-27 16:20:22] Checking for CVMFS
[2025-07-27 16:20:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:20:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:20:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:20:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:20:22] 2.11.2.0 2924 112428 97380 148823 1 56 15175646 20275200 1 130560 0 40222066 99.972 10277802 11283 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 16:20:22] CVMFS is ok
[2025-07-27 16:20:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:20:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:20:22] Further information can be found at the LHC@home message board.
[2025-07-27 16:20:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:20:22] Checking for apptainer binary...
[2025-07-27 16:20:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:20:22] Running /usr/bin/apptainer --version
[2025-07-27 16:20:22] apptainer version 1.3.2-1.el7
[2025-07-27 16:20:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:20:24] c-205-28.aglt2.org
[2025-07-27 16:20:24] apptainer works
[2025-07-27 16:20:24] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:20:24] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:20:24] Starting ATLAS job with PandaID=6747375789
[2025-07-27 16:20:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:43:09]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:43:09]  is_altstaged=None
[2025-07-27 17:43:09]  is_tar=False
[2025-07-27 17:43:09]  lfn=log.45743349._047031.job.log.tgz.1
[2025-07-27 17:43:09]  mtime=0
[2025-07-27 17:43:09]  protocol_id=None
[2025-07-27 17:43:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:43:09]  replicas=None
[2025-07-27 17:43:09]  scope=mc23_13p6TeV
[2025-07-27 17:43:09]  status=None
[2025-07-27 17:43:09]  status_code=0
[2025-07-27 17:43:09]  storage_token=
[2025-07-27 17:43:09]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747375789/log.45743349._047031.job.log.tgz.1
[2025-07-27 17:43:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/d2/log.45743349._047031.job.log.tgz.1
[2025-07-27 17:43:09]  workdir=None
[2025-07-27 17:43:09] ]
[2025-07-27 17:43:09] 2025-07-27 21:42:30,000 | INFO     | transferring file log.45743349._047031.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747375789/log.45743349._047031.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:43:09] 2025-07-27 21:42:30,001 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747375789/log.45743349._047031.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._047031.job
[2025-07-27 17:43:09] 2025-07-27 21:42:30,023 | INFO     | adding to output.list: log.45743349._047031.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/d2/log.45743349._047031.job.log.tg
[2025-07-27 17:43:09] 2025-07-27 21:42:30,024 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:43:09] 2025-07-27 21:42:30,024 | INFO     | summary of transferred files:
[2025-07-27 17:43:09] 2025-07-27 21:42:30,024 | INFO     |  -- lfn=log.45743349._047031.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:43:09] 2025-07-27 21:42:30,025 | INFO     | stage-out finished correctly
[2025-07-27 17:43:09] 2025-07-27 21:42:30,741 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:43:09] 2025-07-27 21:42:31,064 | INFO     | monitor loop #370: job 0:6747375789 is in state 'finished'
[2025-07-27 17:43:09] 2025-07-27 21:42:31,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:43:09] 2025-07-27 21:42:33,168 | INFO     | job 6747375789 has state=finished
[2025-07-27 17:43:09] 2025-07-27 21:42:33,168 | INFO     | preparing for final server update for job 6747375789 in state='finished'
[2025-07-27 17:43:09] 2025-07-27 21:42:33,169 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:43:09] 2025-07-27 21:42:33,169 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:43:09] 2025-07-27 21:42:33,169 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:43:09] 2025-07-27 21:42:33,169 | INFO     | job 6747375789 has finished - writing final server update
[2025-07-27 17:43:09] 2025-07-27 21:42:33,169 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:43:09] 2025-07-27 21:42:33,170 | INFO     | executing command: lscpu
[2025-07-27 17:43:09] 2025-07-27 21:42:33,197 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:43:09] 2025-07-27 21:42:33,567 | INFO     | monitor loop #371: job 0:6747375789 is in state 'finished'
[2025-07-27 17:43:09] 2025-07-27 21:42:33,567 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:43:09] 2025-07-27 21:42:36,076 | INFO     | monitor loop #372: job 0:6747375789 is in state 'finished'
[2025-07-27 17:43:09] 2025-07-27 21:42:36,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:43:09] 2025-07-27 21:42:38,112 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 17:43:09] 2025-07-27 21:42:38,115 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-27 17:43:09] 2025-07-27 21:42:38,116 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747375789/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:43:09] 2025-07-27 21:42:38,117 | INFO     | extracted standard info from prmon json
[2025-07-27 17:43:09] 2025-07-27 21:42:38,117 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:43:09] 2025-07-27 21:42:38,117 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:43:09] 2025-07-27 21:42:38,118 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:43:09] 2025-07-27 21:42:38,118 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:43:09] 2025-07-27 21:42:38,119 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:43:09] 2025-07-27 21:42:38,120 | INFO     | sum of square deviations: 120605052.0
[2025-07-27 17:43:09] 2025-07-27 21:42:38,120 | INFO     | sum of deviations: -9327601927.0
[2025-07-27 17:43:09] 2025-07-27 21:42:38,120 | INFO     | mean x: 1753650169.0
[2025-07-27 17:43:09] 2025-07-27 21:42:38,120 | INFO     | mean y: 2877939.8767123288
[2025-07-27 17:43:09] 2025-07-27 21:42:38,120 | INFO     | -- intersect: 135630286778.83873
[2025-07-27 17:43:09] 2025-07-27 21:42:38,120 | INFO     | intersect: 135630286778.83873
[2025-07-27 17:43:09] 2025-07-27 21:42:38,121 | INFO     | chi2: 0.07022889988307464
[2025-07-27 17:43:09] 2025-07-27 21:42:38,121 | INFO     | -- intersect: 135630286778.83873
[2025-07-27 17:43:09] 2025-07-27 21:42:38,121 | INFO     | current memory leak: -77.34 B/s (using 73 data points, chi2=0.07)
[2025-07-27 17:43:09] 2025-07-27 21:42:38,121 | INFO     | could have reported an average CPU frequency of 2032 MHz (6 samples)
[2025-07-27 17:43:09] 2025-07-27 21:42:38,121 | INFO     | ..............................
[2025-07-27 17:43:09] 2025-07-27 21:42:38,121 | INFO     | . Timing measurements:
[2025-07-27 17:43:09] 2025-07-27 21:42:38,121 | INFO     | . get job = 0 s
[2025-07-27 17:43:09] 2025-07-27 21:42:38,122 | INFO     | . initial setup = 2 s
[2025-07-27 17:43:09] 2025-07-27 21:42:38,122 | INFO     | . payload setup = 9 s
[2025-07-27 17:43:09] 2025-07-27 21:42:38,122 | INFO     | . stage-in = 0 s
[2025-07-27 17:43:09] 2025-07-27 21:42:38,122 | INFO     | . payload execution = 4882 s
[2025-07-27 17:43:09] 2025-07-27 21:42:38,122 | INFO     | . stage-out = 0 s
[2025-07-27 17:43:09] 2025-07-27 21:42:38,122 | INFO     | . log creation = 0 s
[2025-07-27 17:43:09] 2025-07-27 21:42:38,122 | INFO     | ..............................
[2025-07-27 17:43:09] 2025-07-27 21:42:38,206 | INFO     | 
[2025-07-27 17:43:09] 2025-07-27 21:42:38,207 | INFO     | job summary report
[2025-07-27 17:43:09] 2025-07-27 21:42:38,207 | INFO     | --------------------------------------------------
[2025-07-27 17:43:09] 2025-07-27 21:42:38,207 | INFO     | PanDA job id: 6747375789
[2025-07-27 17:43:09] 2025-07-27 21:42:38,207 | INFO     | task id: 45743349
[2025-07-27 17:43:09] 2025-07-27 21:42:38,207 | INFO     | errors: (none)
[2025-07-27 17:43:09] 2025-07-27 21:42:38,208 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:43:09] 2025-07-27 21:42:38,208 | INFO     | pilot state: finished 
[2025-07-27 17:43:09] 2025-07-27 21:42:38,208 | INFO     | transexitcode: 0
[2025-07-27 17:43:09] 2025-07-27 21:42:38,208 | INFO     | exeerrorcode: 0
[2025-07-27 17:43:09] 2025-07-27 21:42:38,208 | INFO     | exeerrordiag: 
[2025-07-27 17:43:09] 2025-07-27 21:42:38,208 | INFO     | exitcode: 0
[2025-07-27 17:43:09] 2025-07-27 21:42:38,208 | INFO     | exitmsg: OK
[2025-07-27 17:43:09] 2025-07-27 21:42:38,209 | INFO     | cpuconsumptiontime: 53760 s
[2025-07-27 17:43:09] 2025-07-27 21:42:38,209 | INFO     | nevents: 400
[2025-07-27 17:43:09] 2025-07-27 21:42:38,209 | INFO     | neventsw: 0
[2025-07-27 17:43:09] 2025-07-27 21:42:38,209 | INFO     | pid: 17102
[2025-07-27 17:43:09] 2025-07-27 21:42:38,209 | INFO     | pgrp: 17102
[2025-07-27 17:43:09] 2025-07-27 21:42:38,209 | INFO     | corecount: 12
[2025-07-27 17:43:09] 2025-07-27 21:42:38,210 | INFO     | event service: False
[2025-07-27 17:43:09] 2025-07-27 21:42:38,210 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 4895: 2424039, 4896: 2433037, 4897: 2433093, 4904: 2433415}
[2025-07-27 17:43:09] 2025-07-27 21:42:38,210 | INFO     | --------------------------------------------------
[2025-07-27 17:43:09] 2025-07-27 21:42:38,210 | INFO     | 
[2025-07-27 17:43:09] 2025-07-27 21:42:38,210 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:43:09] 2025-07-27 21:42:38,236 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,236 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,236 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,236 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,237 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,237 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,237 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,237 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,237 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,237 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,238 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,238 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,238 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,238 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,238 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,239 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,239 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,239 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:43:09] 2025-07-27 21:42:38,239 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,239 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:43:09] 2025-07-27 21:42:38,239 | INFO     | job 6747375789 has completed (purged errors)
[2025-07-27 17:43:09] 2025-07-27 21:42:38,240 | INFO     | overall cleanup function is called
[2025-07-27 17:43:09] 2025-07-27 21:42:39,248 | INFO     | --- collectZombieJob: --- 10, [17102]
[2025-07-27 17:43:09] 2025-07-27 21:42:39,248 | INFO     | zombie collector waiting for pid 17102
[2025-07-27 17:43:09] 2025-07-27 21:42:39,256 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:43:09] 2025-07-27 21:42:39,256 | INFO     | collected zombie processes
[2025-07-27 17:43:09] 2025-07-27 21:42:39,256 | INFO     | will attempt to kill all subprocesses of pid=17102
[2025-07-27 17:43:09] 2025-07-27 21:42:39,346 | INFO     | process IDs to be killed: [17102] (in reverse order)
[2025-07-27 17:43:09] 2025-07-27 21:42:39,552 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:43:09] 2025-07-27 21:42:39,552 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:43:09] 2025-07-27 21:42:39,556 | INFO     | did not find any defunct processes belonging to 17102
[2025-07-27 17:43:09] 2025-07-27 21:42:39,559 | INFO     | did not find any defunct processes belonging to 17102
[2025-07-27 17:43:09] 2025-07-27 21:42:39,559 | INFO     | ready for new job
[2025-07-27 17:43:09] 2025-07-27 21:42:39,559 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:43:09] 2025-07-27 21:42:39,560 | INFO     | ***************************************
[2025-07-27 17:43:09] 2025-07-27 21:42:39,561 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:43:09] 2025-07-27 21:42:39,561 | INFO     | ***************************************
[2025-07-27 17:43:09] 2025-07-27 21:42:39,561 | INFO     | 
[2025-07-27 17:43:09] 2025-07-27 21:42:39,562 | INFO     | architecture information:
[2025-07-27 17:43:09] 2025-07-27 21:42:39,562 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:43:09] 2025-07-27 21:42:39,578 | INFO     | cat /etc/os-release:
[2025-07-27 17:43:09] NAME="CentOS Linux"
[2025-07-27 17:43:09] VERSION="7 (Core)"
[2025-07-27 17:43:09] ID="centos"
[2025-07-27 17:43:09] ID_LIKE="rhel fedora"
[2025-07-27 17:43:09] VERSION_ID="7"
[2025-07-27 17:43:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:43:09] ANSI_COLOR="0;31"
[2025-07-27 17:43:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:43:09] HOME_URL="https://www.centos.org/"
[2025-07-27 17:43:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:43:09] 
[2025-07-27 17:43:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:43:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:43:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:43:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:43:09] 
[2025-07-27 17:43:09] 2025-07-27 21:42:39,578 | INFO     | ***************************************
[2025-07-27 17:43:09] 2025-07-27 21:42:40,081 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:43:09] 2025-07-27 21:42:40,098 | INFO     | sufficient remaining disk space (29521608704 B)
[2025-07-27 17:43:09] 2025-07-27 21:42:40,098 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:43:09] 2025-07-27 21:42:40,098 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:43:09] 2025-07-27 21:42:40,099 | INFO     | update_server=False
[2025-07-27 17:43:09] 2025-07-27 21:42:40,099 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:43:09] 2025-07-27 21:42:40,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:43:09] 2025-07-27 21:42:40,099 | INFO     | aborting loop
[2025-07-27 17:43:09] 2025-07-27 21:42:40,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:43:09] 2025-07-27 21:42:40,188 | INFO     | all job control threads have been joined
[2025-07-27 17:43:09] 2025-07-27 21:42:40,626 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:43:09] 2025-07-27 21:42:41,102 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:41,104 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:41,105 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:41,179 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:41,190 | INFO     | [job] control thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:41,197 | INFO     | all data control threads have been joined
[2025-07-27 17:43:09] 2025-07-27 21:42:41,210 | INFO     | all payload control threads have been joined
[2025-07-27 17:43:09] 2025-07-27 21:42:41,237 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:41,335 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:43:09] 2025-07-27 21:42:41,432 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:41,699 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:41,700 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:41,886 | INFO     | [job] validate thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:42,202 | INFO     | [data] control thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:42,215 | INFO     | [payload] control thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:42,367 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:42,580 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:42,630 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:45,336 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:43:09] 2025-07-27 21:42:47,364 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139725911496512)>', '<ExcThread(monitor, started 139724731700992)>']
[2025-07-27 17:43:09] 2025-07-27 21:42:52,367 | INFO     | all workflow threads have been joined
[2025-07-27 17:43:09] 2025-07-27 21:42:52,367 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:43:09] 2025-07-27 21:42:52,367 | INFO     | traces error code: 0
[2025-07-27 17:43:09] 2025-07-27 21:42:52,367 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:43:09] 2025-07-27 21:43:09,631 | INFO     | PID=10645 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 17:43:09] 2025-07-27 21:43:09,632 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:43:09] 2025-07-27 21:43:09,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:43:09] 2025-07-27 21:43:09,632 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:43:09] 2025-07-27 21:43:09,632 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:43:09] 2025-07-27 21:43:09,632 | INFO     | [monitor] control thread has ended
[2025-07-27 17:43:09] 2025-07-27 21:43:09,726 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:43:09] 2025-07-27 21:43:09,730 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:43:09] 2025-07-27 21:43:09,734 [wrapper] pilotpid: 10645
[2025-07-27 17:43:09] 2025-07-27 21:43:09,738 [wrapper] Pilot exit status: 0
[2025-07-27 17:43:09] 2025-07-27 21:43:09,755 [wrapper] pandaids: 6747375789
[2025-07-27 17:43:09] 2025-07-27 21:43:09,797 [wrapper] cleanup supervisor_pilot 10572 10646
[2025-07-27 17:43:09] 2025-07-27 21:43:09,801 [wrapper] Test setup, not cleaning
[2025-07-27 17:43:09] 2025-07-27 21:43:09,805 [wrapper] apfmon messages muted
[2025-07-27 17:43:09] 2025-07-27 21:43:09,809 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:43:09] 2025-07-27 21:43:09,813 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:43:09]  *** Error codes and diagnostics ***
[2025-07-27 17:43:09]     "exeErrorCode": 0,
[2025-07-27 17:43:09]     "exeErrorDiag": "",
[2025-07-27 17:43:09]     "pilotErrorCode": 0,
[2025-07-27 17:43:09]     "pilotErrorDiag": "",
[2025-07-27 17:43:09]  *** Listing of results directory ***
[2025-07-27 17:43:09] total 350428
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 06:10 pilot3.tar.gz
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 06:36 queuedata.json
[2025-07-27 17:43:09] -rwx------ 1 boincer umatlas     36292 Jul 27 06:36 runpilot2-wrapper.sh
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas       100 Jul 27 16:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:43:09] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 16:20 run_atlas
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas       105 Jul 27 16:20 job.xml
[2025-07-27 17:43:09] -rw-r--r-- 2 boincer umatlas 142266230 Jul 27 16:20 EVNT.45743347._002611.pool.root.1
[2025-07-27 17:43:09] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 16:20 start_atlas.sh
[2025-07-27 17:43:09] drwxrwx--x 2 boincer umatlas      4096 Jul 27 16:20 shared
[2025-07-27 17:43:09] -rw-r--r-- 2 boincer umatlas    542895 Jul 27 16:20 input.tar.gz
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas         0 Jul 27 16:20 boinc_lockfile
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas      2563 Jul 27 16:20 pandaJob.out
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas    980109 Jul 27 16:20 agis_schedconf.cvmfs.json
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas   1593052 Jul 27 16:20 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:43:09] drwx------ 4 boincer umatlas      4096 Jul 27 16:20 pilot3
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 17:40 init_data.xml
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas 211042249 Jul 27 17:41 HITS.45743349._047031.pool.root.1
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas       529 Jul 27 17:42 boinc_task_state.xml
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas      1047 Jul 27 17:42 memory_monitor_summary.json
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas    360430 Jul 27 17:42 log.45743349._047031.job.log.tgz.1
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas      7857 Jul 27 17:42 heartbeat.json
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas        27 Jul 27 17:42 wrapper_checkpoint.txt
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 17:42 boinc_mmap_file
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas        95 Jul 27 17:43 pilot_heartbeat.json
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas       745 Jul 27 17:43 pilotlog.txt
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas    469994 Jul 27 17:43 log.45743349._047031.job.log.1
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas       357 Jul 27 17:43 output.list
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas       620 Jul 27 17:43 runtime_log
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas    849920 Jul 27 17:43 result.tar.gz
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 17:43 runtime_log.err
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas       659 Jul 27 17:43 4mOKDmKvD07n9Rq4apOajLDm4fhM0noT9bVof3QYDmSP2KDmeN7u7n.diag
[2025-07-27 17:43:09] -rw-r--r-- 1 boincer umatlas     21497 Jul 27 17:43 stderr.txt
[2025-07-27 17:43:09] HITS file was successfully produced:
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas 211042249 Jul 27 17:41 shared/HITS.pool.root.1
[2025-07-27 17:43:09]  *** Contents of shared directory: ***
[2025-07-27 17:43:09] total 346412
[2025-07-27 17:43:09] -rw-r--r-- 2 boincer umatlas 142266230 Jul 27 16:20 ATLAS.root_0
[2025-07-27 17:43:09] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 16:20 start_atlas.sh
[2025-07-27 17:43:09] -rw-r--r-- 2 boincer umatlas    542895 Jul 27 16:20 input.tar.gz
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas 211042249 Jul 27 17:41 HITS.pool.root.1
[2025-07-27 17:43:09] -rw------- 1 boincer umatlas    849920 Jul 27 17:43 result.tar.gz
17:43:11 (6929): run_atlas exited; CPU time 53728.006851
17:43:11 (6929): called boinc_finish(0)

</stderr_txt>
]]>

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