Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:18:13 (3434344): wrapper (7.7.26015): starting
16:18:13 (3434344): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 16:18:13] Arguments: --nthreads 8
[2025-07-27 16:18:13] Threads: 8
[2025-07-27 16:18:13] Checking for CVMFS
[2025-07-27 16:18:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:18:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:18:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:18:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:18:13] 2.12.6.0 3144059 18833 338416 148823 1 65 29983646 40960001 9863 16776704 0 61334600 99.757 77243151 28450 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 16:18:13] CVMFS is ok
[2025-07-27 16:18:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:18:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:18:13] Further information can be found at the LHC@home message board.
[2025-07-27 16:18:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:18:13] Checking for apptainer binary...
[2025-07-27 16:18:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:18:13] Running /usr/bin/apptainer --version
[2025-07-27 16:18:14] apptainer version 1.4.1-1.el9
[2025-07-27 16:18:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:18:14] c7-11-15.aglt2.org
[2025-07-27 16:18:14] apptainer works
[2025-07-27 16:18:14] Set ATHENA_PROC_NUMBER=8
[2025-07-27 16:18:14] Set ATHENA_CORE_NUMBER=8
[2025-07-27 16:18:14] Starting ATLAS job with PandaID=6747499896
[2025-07-27 16:18:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:54:12]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:54:12]  protocol_id=None
[2025-07-27 17:54:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:54:12]  replicas=None
[2025-07-27 17:54:12]  scope=mc23_13p6TeV
[2025-07-27 17:54:12]  status=None
[2025-07-27 17:54:12]  status_code=0
[2025-07-27 17:54:12]  storage_token=
[2025-07-27 17:54:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747499896/log.45743349._051281.job.log.tgz.1
[2025-07-27 17:54:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/39/ad/log.45743349._051281.job.log.tgz.1
[2025-07-27 17:54:12]  workdir=None
[2025-07-27 17:54:12] ]
[2025-07-27 17:54:12] 2025-07-27 21:53:32,213 | INFO     | transferring file log.45743349._051281.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747499896/log.45743349._051281.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:54:12] 2025-07-27 21:53:32,214 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747499896/log.45743349._051281.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._051281.job
[2025-07-27 17:54:12] 2025-07-27 21:53:32,237 | INFO     | adding to output.list: log.45743349._051281.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/39/ad/log.45743349._051281.job.log.tg
[2025-07-27 17:54:12] 2025-07-27 21:53:32,238 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:54:12] 2025-07-27 21:53:32,238 | INFO     | summary of transferred files:
[2025-07-27 17:54:12] 2025-07-27 21:53:32,238 | INFO     |  -- lfn=log.45743349._051281.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:54:12] 2025-07-27 21:53:32,238 | INFO     | stage-out finished correctly
[2025-07-27 17:54:12] 2025-07-27 21:53:33,120 | WARNING  | process 3445245 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 17:54:12] 2025-07-27 21:53:33,120 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747499896/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:54:12] 2025-07-27 21:53:33,393 | INFO     | number of running child processes to parent process 3445245: 1
[2025-07-27 17:54:12] 2025-07-27 21:53:33,394 | INFO     | maximum number of monitored processes: 6
[2025-07-27 17:54:12] 2025-07-27 21:53:33,686 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:54:12] 2025-07-27 21:53:33,765 | INFO     | job 6747499896 has state=finished
[2025-07-27 17:54:12] 2025-07-27 21:53:33,766 | INFO     | preparing for final server update for job 6747499896 in state='finished'
[2025-07-27 17:54:12] 2025-07-27 21:53:33,766 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:54:12] 2025-07-27 21:53:33,766 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:54:12] 2025-07-27 21:53:33,766 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:54:12] 2025-07-27 21:53:33,766 | INFO     | job 6747499896 has finished - writing final server update
[2025-07-27 17:54:12] 2025-07-27 21:53:33,766 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:54:12] 2025-07-27 21:53:33,767 | INFO     | executing command: lscpu
[2025-07-27 17:54:12] 2025-07-27 21:53:33,832 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:54:12] 2025-07-27 21:53:35,897 | INFO     | monitor loop #410: job 0:6747499896 is in state 'finished'
[2025-07-27 17:54:12] 2025-07-27 21:53:35,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:54:12] 2025-07-27 21:53:38,401 | INFO     | monitor loop #411: job 0:6747499896 is in state 'finished'
[2025-07-27 17:54:12] 2025-07-27 21:53:38,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:54:12] 2025-07-27 21:53:39,107 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 17:54:12] 2025-07-27 21:53:39,124 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3250.3597656250004
[2025-07-27 17:54:12] 2025-07-27 21:53:39,134 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747499896/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:54:12] 2025-07-27 21:53:39,135 | INFO     | extracted standard info from prmon json
[2025-07-27 17:54:12] 2025-07-27 21:53:39,135 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:54:12] 2025-07-27 21:53:39,135 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:54:12] 2025-07-27 21:53:39,135 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:54:12] 2025-07-27 21:53:39,135 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:54:12] 2025-07-27 21:53:39,137 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:54:12] 2025-07-27 21:53:39,137 | INFO     | sum of square deviations: 197207541.48837242
[2025-07-27 17:54:12] 2025-07-27 21:53:39,138 | INFO     | sum of deviations: -21426650996.441864
[2025-07-27 17:54:12] 2025-07-27 21:53:39,138 | INFO     | mean x: 1753650439.511628
[2025-07-27 17:54:12] 2025-07-27 21:53:39,138 | INFO     | mean y: 2432206.4418604653
[2025-07-27 17:54:12] 2025-07-27 21:53:39,138 | INFO     | -- intersect: 190537011429.86365
[2025-07-27 17:54:12] 2025-07-27 21:53:39,138 | INFO     | intersect: 190537011429.86365
[2025-07-27 17:54:12] 2025-07-27 21:53:39,138 | INFO     | chi2: 0.18840663320038142
[2025-07-27 17:54:12] 2025-07-27 21:53:39,138 | INFO     | -- intersect: 190537011429.86365
[2025-07-27 17:54:12] 2025-07-27 21:53:39,138 | INFO     | current memory leak: -108.65 B/s (using 86 data points, chi2=0.19)
[2025-07-27 17:54:12] 2025-07-27 21:53:39,138 | INFO     | could have reported an average CPU frequency of 3260 MHz (7 samples)
[2025-07-27 17:54:12] 2025-07-27 21:53:39,139 | INFO     | ..............................
[2025-07-27 17:54:12] 2025-07-27 21:53:39,139 | INFO     | . Timing measurements:
[2025-07-27 17:54:12] 2025-07-27 21:53:39,139 | INFO     | . get job = 0 s
[2025-07-27 17:54:12] 2025-07-27 21:53:39,139 | INFO     | . initial setup = 2 s
[2025-07-27 17:54:12] 2025-07-27 21:53:39,139 | INFO     | . payload setup = 8 s
[2025-07-27 17:54:12] 2025-07-27 21:53:39,139 | INFO     | . stage-in = 0 s
[2025-07-27 17:54:12] 2025-07-27 21:53:39,139 | INFO     | . payload execution = 5672 s
[2025-07-27 17:54:12] 2025-07-27 21:53:39,139 | INFO     | . stage-out = 0 s
[2025-07-27 17:54:12] 2025-07-27 21:53:39,139 | INFO     | . log creation = 0 s
[2025-07-27 17:54:12] 2025-07-27 21:53:39,139 | INFO     | ..............................
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | 
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | job summary report
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | --------------------------------------------------
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | PanDA job id: 6747499896
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | task id: 45743349
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | errors: (none)
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | pilot state: finished 
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | transexitcode: 0
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | exeerrorcode: 0
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | exeerrordiag: 
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | exitcode: 0
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | exitmsg: OK
[2025-07-27 17:54:12] 2025-07-27 21:53:39,212 | INFO     | cpuconsumptiontime: 37403 s
[2025-07-27 17:54:12] 2025-07-27 21:53:39,213 | INFO     | nevents: 400
[2025-07-27 17:54:12] 2025-07-27 21:53:39,213 | INFO     | neventsw: 0
[2025-07-27 17:54:12] 2025-07-27 21:53:39,213 | INFO     | pid: 3445245
[2025-07-27 17:54:12] 2025-07-27 21:53:39,213 | INFO     | pgrp: 3445245
[2025-07-27 17:54:12] 2025-07-27 21:53:39,213 | INFO     | corecount: 8
[2025-07-27 17:54:12] 2025-07-27 21:53:39,213 | INFO     | event service: False
[2025-07-27 17:54:12] 2025-07-27 21:53:39,213 | INFO     | sizes: {0: 2397253, 1: 2397452, 6: 2397714, 11: 2397742, 5684: 2424334, 5685: 2433332, 5687: 2433516, 5692: 2433710}
[2025-07-27 17:54:12] 2025-07-27 21:53:39,213 | INFO     | --------------------------------------------------
[2025-07-27 17:54:12] 2025-07-27 21:53:39,213 | INFO     | 
[2025-07-27 17:54:12] 2025-07-27 21:53:39,213 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:54:12] 2025-07-27 21:53:39,245 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,245 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:54:12] 2025-07-27 21:53:39,246 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,247 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:54:12] 2025-07-27 21:53:39,247 | INFO     | job 6747499896 has completed (purged errors)
[2025-07-27 17:54:12] 2025-07-27 21:53:39,247 | INFO     | overall cleanup function is called
[2025-07-27 17:54:12] 2025-07-27 21:53:40,256 | INFO     | --- collectZombieJob: --- 10, [3445245]
[2025-07-27 17:54:12] 2025-07-27 21:53:40,257 | INFO     | zombie collector waiting for pid 3445245
[2025-07-27 17:54:12] 2025-07-27 21:53:40,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:54:12] 2025-07-27 21:53:40,258 | INFO     | collected zombie processes
[2025-07-27 17:54:12] 2025-07-27 21:53:40,258 | INFO     | will attempt to kill all subprocesses of pid=3445245
[2025-07-27 17:54:12] 2025-07-27 21:53:40,555 | INFO     | process IDs to be killed: [3445245] (in reverse order)
[2025-07-27 17:54:12] 2025-07-27 21:53:40,681 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:54:12] 2025-07-27 21:53:40,682 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:54:12] 2025-07-27 21:53:40,696 | INFO     | did not find any defunct processes belonging to 3445245
[2025-07-27 17:54:12] 2025-07-27 21:53:40,710 | INFO     | did not find any defunct processes belonging to 3445245
[2025-07-27 17:54:12] 2025-07-27 21:53:40,711 | INFO     | ready for new job
[2025-07-27 17:54:12] 2025-07-27 21:53:40,711 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:54:12] 2025-07-27 21:53:40,714 | INFO     | ***************************************
[2025-07-27 17:54:12] 2025-07-27 21:53:40,714 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:54:12] 2025-07-27 21:53:40,714 | INFO     | ***************************************
[2025-07-27 17:54:12] 2025-07-27 21:53:40,714 | INFO     | 
[2025-07-27 17:54:12] 2025-07-27 21:53:40,732 | INFO     | architecture information:
[2025-07-27 17:54:12] 2025-07-27 21:53:40,732 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:54:12] 2025-07-27 21:53:40,749 | INFO     | cat /etc/os-release:
[2025-07-27 17:54:12] NAME="CentOS Linux"
[2025-07-27 17:54:12] VERSION="7 (Core)"
[2025-07-27 17:54:12] ID="centos"
[2025-07-27 17:54:12] ID_LIKE="rhel fedora"
[2025-07-27 17:54:12] VERSION_ID="7"
[2025-07-27 17:54:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:54:12] ANSI_COLOR="0;31"
[2025-07-27 17:54:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:54:12] HOME_URL="https://www.centos.org/"
[2025-07-27 17:54:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:54:12] 
[2025-07-27 17:54:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:54:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:54:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:54:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:54:12] 
[2025-07-27 17:54:12] 2025-07-27 21:53:40,749 | INFO     | ***************************************
[2025-07-27 17:54:12] 2025-07-27 21:53:41,252 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:54:12] 2025-07-27 21:53:41,276 | INFO     | sufficient remaining disk space (86171975680 B)
[2025-07-27 17:54:12] 2025-07-27 21:53:41,276 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:54:12] 2025-07-27 21:53:41,277 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:54:12] 2025-07-27 21:53:41,277 | INFO     | update_server=False
[2025-07-27 17:54:12] 2025-07-27 21:53:41,277 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:54:12] 2025-07-27 21:53:41,277 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:54:12] 2025-07-27 21:53:41,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:54:12] 2025-07-27 21:53:41,912 | INFO     | aborting loop
[2025-07-27 17:54:12] 2025-07-27 21:53:41,955 | INFO     | all job control threads have been joined
[2025-07-27 17:54:12] 2025-07-27 21:53:42,151 | INFO     | all payload control threads have been joined
[2025-07-27 17:54:12] 2025-07-27 21:53:42,283 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:42,290 | INFO     | all data control threads have been joined
[2025-07-27 17:54:12] 2025-07-27 21:53:42,780 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:42,917 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:42,960 | INFO     | [job] control thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:43,128 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:43,157 | INFO     | [payload] control thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:43,259 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:43,284 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:43,295 | INFO     | [data] control thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:43,621 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:43,664 | INFO     | [job] validate thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:43,720 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:43,822 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:44,222 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:54:12] 2025-07-27 21:53:44,280 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:54:12] 2025-07-27 21:53:45,228 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:48,288 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:51,827 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:54:12] 2025-07-27 21:53:52,833 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:54:12] 2025-07-27 21:53:54,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140257753257792)>', '<ExcThread(monitor, started 140257123104512)>']
[2025-07-27 17:54:12] 2025-07-27 21:53:59,369 | INFO     | all workflow threads have been joined
[2025-07-27 17:54:12] 2025-07-27 21:53:59,369 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:54:12] 2025-07-27 21:53:59,370 | INFO     | traces error code: 0
[2025-07-27 17:54:12] 2025-07-27 21:53:59,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:54:12] 2025-07-27 21:54:11,808 | INFO     | PID=3438689 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:54:12] 2025-07-27 21:54:11,808 | INFO     | .. there are 12 such processes running
[2025-07-27 17:54:12] 2025-07-27 21:54:11,809 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:54:12] 2025-07-27 21:54:11,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:54:12] 2025-07-27 21:54:11,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:54:12] 2025-07-27 21:54:11,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:54:12] 2025-07-27 21:54:11,809 | INFO     | [monitor] control thread has ended
[2025-07-27 17:54:12] 2025-07-27 21:54:11,970 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:54:12] 2025-07-27 21:54:11,976 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:54:12] 2025-07-27 21:54:11,981 [wrapper] pilotpid: 3438689
[2025-07-27 17:54:12] 2025-07-27 21:54:11,984 [wrapper] Pilot exit status: 0
[2025-07-27 17:54:12] 2025-07-27 21:54:12,001 [wrapper] pandaids: 6747499896
[2025-07-27 17:54:12] 2025-07-27 21:54:12,089 [wrapper] cleanup supervisor_pilot 3800902 3438690
[2025-07-27 17:54:12] 2025-07-27 21:54:12,094 [wrapper] Test setup, not cleaning
[2025-07-27 17:54:12] 2025-07-27 21:54:12,098 [wrapper] apfmon messages muted
[2025-07-27 17:54:12] 2025-07-27 21:54:12,103 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:54:12] 2025-07-27 21:54:12,109 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:54:12]  *** Error codes and diagnostics ***
[2025-07-27 17:54:12]     "exeErrorCode": 0,
[2025-07-27 17:54:12]     "exeErrorDiag": "",
[2025-07-27 17:54:12]     "pilotErrorCode": 0,
[2025-07-27 17:54:12]     "pilotErrorDiag": "",
[2025-07-27 17:54:12]  *** Listing of results directory ***
[2025-07-27 17:54:12] total 392896
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:04 queuedata.json
[2025-07-27 17:54:12] -rwx------. 1 boincer umatlas     36292 Jul 27 11:06 runpilot2-wrapper.sh
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:54:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:18 run_atlas
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:18 job.xml
[2025-07-27 17:54:12] -rw-r--r--. 2 boincer umatlas 189798803 Jul 27 16:18 EVNT.45743347._002745.pool.root.1
[2025-07-27 17:54:12] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 16:18 input.tar.gz
[2025-07-27 17:54:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:18 start_atlas.sh
[2025-07-27 17:54:12] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:18 shared
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:18 boinc_lockfile
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 16:18 pandaJob.out
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas    980109 Jul 27 16:18 agis_schedconf.cvmfs.json
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:18 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:54:12] drwx------. 4 boincer umatlas      4096 Jul 27 16:18 pilot3
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas      6896 Jul 27 17:49 init_data.xml
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas 206927661 Jul 27 17:53 HITS.45743349._051281.pool.root.1
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:53 boinc_task_state.xml
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas      1028 Jul 27 17:53 memory_monitor_summary.json
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas    311662 Jul 27 17:53 log.45743349._051281.job.log.tgz.1
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas      7774 Jul 27 17:53 heartbeat.json
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:54 boinc_mmap_file
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:54 wrapper_checkpoint.txt
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas       823 Jul 27 17:54 pilotlog.txt
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas        95 Jul 27 17:54 pilot_heartbeat.json
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas    546137 Jul 27 17:54 log.45743349._051281.job.log.1
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas       357 Jul 27 17:54 output.list
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:54 runtime_log
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas    880640 Jul 27 17:54 result.tar.gz
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 17:54 runtime_log.err
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas       652 Jul 27 17:54 dXmLDmX8H07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBdVLDmqJzMhn.diag
[2025-07-27 17:54:12] -rw-r--r--. 1 boincer umatlas     21857 Jul 27 17:54 stderr.txt
[2025-07-27 17:54:12] HITS file was successfully produced:
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas 206927661 Jul 27 17:53 shared/HITS.pool.root.1
[2025-07-27 17:54:12]  *** Contents of shared directory: ***
[2025-07-27 17:54:12] total 388848
[2025-07-27 17:54:12] -rw-r--r--. 2 boincer umatlas 189798803 Jul 27 16:18 ATLAS.root_0
[2025-07-27 17:54:12] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 16:18 input.tar.gz
[2025-07-27 17:54:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:18 start_atlas.sh
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas 206927661 Jul 27 17:53 HITS.pool.root.1
[2025-07-27 17:54:12] -rw-------. 1 boincer umatlas    880640 Jul 27 17:54 result.tar.gz
17:54:13 (3434344): run_atlas exited; CPU time 37482.983903
17:54:13 (3434344): called boinc_finish(0)

</stderr_txt>
]]>

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