Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:21:20 (3995162): wrapper (7.7.26015): starting
16:21:20 (3995162): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 16:21:20] Arguments: --nthreads 8
[2025-07-27 16:21:20] Threads: 8
[2025-07-27 16:21:20] Checking for CVMFS
[2025-07-27 16:21:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:21:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:21:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:21:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:21:20] 2.13.1.0 679170 14613 192076 148823 1 104 38977617 40960001 13298 16776704 0 38582189 99.924 18930766 47718 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 16:21:20] CVMFS is ok
[2025-07-27 16:21:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:21:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:21:20] Further information can be found at the LHC@home message board.
[2025-07-27 16:21:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:21:20] Checking for apptainer binary...
[2025-07-27 16:21:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:21:20] Running /usr/bin/apptainer --version
[2025-07-27 16:21:20] apptainer version 1.4.1-1.el9
[2025-07-27 16:21:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:21:20] c-212-10.aglt2.org
[2025-07-27 16:21:20] apptainer works
[2025-07-27 16:21:20] Set ATHENA_PROC_NUMBER=8
[2025-07-27 16:21:20] Set ATHENA_CORE_NUMBER=8
[2025-07-27 16:21:20] Starting ATLAS job with PandaID=6747413847
[2025-07-27 16:21:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:49:05]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:49:05]  workdir=None
[2025-07-27 17:49:05] ]
[2025-07-27 17:49:05] 2025-07-27 21:48:24,673 | INFO     | transferring file log.45743349._050273.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747413847/log.45743349._050273.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:49:05] 2025-07-27 21:48:24,673 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747413847/log.45743349._050273.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._050273.job
[2025-07-27 17:49:05] 2025-07-27 21:48:24,696 | INFO     | adding to output.list: log.45743349._050273.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7a/46/log.45743349._050273.job.log.tg
[2025-07-27 17:49:05] 2025-07-27 21:48:24,697 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:49:05] 2025-07-27 21:48:24,697 | INFO     | summary of transferred files:
[2025-07-27 17:49:05] 2025-07-27 21:48:24,697 | INFO     |  -- lfn=log.45743349._050273.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:49:05] 2025-07-27 21:48:24,697 | INFO     | stage-out finished correctly
[2025-07-27 17:49:05] 2025-07-27 21:48:27,092 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:49:05] 2025-07-27 21:48:28,126 | INFO     | job 6747413847 has state=finished
[2025-07-27 17:49:05] 2025-07-27 21:48:28,126 | INFO     | preparing for final server update for job 6747413847 in state='finished'
[2025-07-27 17:49:05] 2025-07-27 21:48:28,126 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:49:05] 2025-07-27 21:48:28,127 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:49:05] 2025-07-27 21:48:28,127 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:49:05] 2025-07-27 21:48:28,127 | INFO     | job 6747413847 has finished - writing final server update
[2025-07-27 17:49:05] 2025-07-27 21:48:28,127 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:49:05] 2025-07-27 21:48:28,128 | INFO     | executing command: lscpu
[2025-07-27 17:49:05] 2025-07-27 21:48:28,193 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:49:05] 2025-07-27 21:48:28,908 | INFO     | PID=3998747 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:49:05] 2025-07-27 21:48:28,908 | INFO     | .. there are 15 such processes running
[2025-07-27 17:49:05] 2025-07-27 21:48:29,353 | WARNING  | process 4005523 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 17:49:05] 2025-07-27 21:48:29,354 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747413847/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:49:05] 2025-07-27 21:48:29,354 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747413847/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:49:05] 2025-07-27 21:48:29,355 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3260255 B
[2025-07-27 17:49:05] 2025-07-27 21:48:29,355 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16267 B
[2025-07-27 17:49:05] 2025-07-27 21:48:29,355 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 17:49:05] 2025-07-27 21:48:33,411 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 17:49:05] 2025-07-27 21:48:33,422 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2967.30928125
[2025-07-27 17:49:05] 2025-07-27 21:48:33,432 | INFO     | sufficient remaining disk space (128856358912 B)
[2025-07-27 17:49:05] 2025-07-27 21:48:33,433 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 17:49:05] 2025-07-27 21:48:33,434 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6747413847: 3562545 B (within 2537553920 B limit)
[2025-07-27 17:49:05] 2025-07-27 21:48:33,435 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6747413847/HITS.45743349._050273.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 17:49:05] 2025-07-27 21:48:33,435 | INFO     | total size of present files: 0 B (workdir size: 3562545 B)
[2025-07-27 17:49:05] 2025-07-27 21:48:33,435 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6747413847/HITS.45743349._050273.pool.root.1 since it does not exist
[2025-07-27 17:49:05] 2025-07-27 21:48:33,440 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747413847/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:49:05] 2025-07-27 21:48:33,441 | INFO     | extracted standard info from prmon json
[2025-07-27 17:49:05] 2025-07-27 21:48:33,441 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:49:05] 2025-07-27 21:48:33,441 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:49:05] 2025-07-27 21:48:33,442 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:49:05] 2025-07-27 21:48:33,442 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:49:05] 2025-07-27 21:48:33,443 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:49:05] 2025-07-27 21:48:33,443 | INFO     | sum of square deviations: 147126479.5
[2025-07-27 17:49:05] 2025-07-27 21:48:33,444 | INFO     | sum of deviations: -14919392017.0
[2025-07-27 17:49:05] 2025-07-27 21:48:33,444 | INFO     | mean x: 1753650374.5
[2025-07-27 17:49:05] 2025-07-27 21:48:33,444 | INFO     | mean y: 2694046.6153846155
[2025-07-27 17:49:05] 2025-07-27 21:48:33,444 | INFO     | -- intersect: 177831984102.6203
[2025-07-27 17:49:05] 2025-07-27 21:48:33,444 | INFO     | intersect: 177831984102.6203
[2025-07-27 17:49:05] 2025-07-27 21:48:33,444 | INFO     | chi2: 0.03693751184667413
[2025-07-27 17:49:05] 2025-07-27 21:48:33,444 | INFO     | -- intersect: 177831984102.6203
[2025-07-27 17:49:05] 2025-07-27 21:48:33,444 | INFO     | current memory leak: -101.41 B/s (using 78 data points, chi2=0.04)
[2025-07-27 17:49:05] 2025-07-27 21:48:33,445 | INFO     | could have reported an average CPU frequency of 2960 MHz (6 samples)
[2025-07-27 17:49:05] 2025-07-27 21:48:33,445 | INFO     | ..............................
[2025-07-27 17:49:05] 2025-07-27 21:48:33,445 | INFO     | . Timing measurements:
[2025-07-27 17:49:05] 2025-07-27 21:48:33,445 | INFO     | . get job = 0 s
[2025-07-27 17:49:05] 2025-07-27 21:48:33,445 | INFO     | . initial setup = 2 s
[2025-07-27 17:49:05] 2025-07-27 21:48:33,445 | INFO     | . payload setup = 7 s
[2025-07-27 17:49:05] 2025-07-27 21:48:33,445 | INFO     | . stage-in = 0 s
[2025-07-27 17:49:05] 2025-07-27 21:48:33,446 | INFO     | . payload execution = 5184 s
[2025-07-27 17:49:05] 2025-07-27 21:48:33,446 | INFO     | . stage-out = 0 s
[2025-07-27 17:49:05] 2025-07-27 21:48:33,446 | INFO     | . log creation = 0 s
[2025-07-27 17:49:05] 2025-07-27 21:48:33,446 | INFO     | ..............................
[2025-07-27 17:49:05] 2025-07-27 21:48:33,515 | INFO     | 
[2025-07-27 17:49:05] 2025-07-27 21:48:33,516 | INFO     | job summary report
[2025-07-27 17:49:05] 2025-07-27 21:48:33,516 | INFO     | --------------------------------------------------
[2025-07-27 17:49:05] 2025-07-27 21:48:33,517 | INFO     | PanDA job id: 6747413847
[2025-07-27 17:49:05] 2025-07-27 21:48:33,517 | INFO     | task id: 45743349
[2025-07-27 17:49:05] 2025-07-27 21:48:33,517 | INFO     | errors: (none)
[2025-07-27 17:49:05] 2025-07-27 21:48:33,517 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:49:05] 2025-07-27 21:48:33,517 | INFO     | pilot state: finished 
[2025-07-27 17:49:05] 2025-07-27 21:48:33,517 | INFO     | transexitcode: 0
[2025-07-27 17:49:05] 2025-07-27 21:48:33,517 | INFO     | exeerrorcode: 0
[2025-07-27 17:49:05] 2025-07-27 21:48:33,517 | INFO     | exeerrordiag: 
[2025-07-27 17:49:05] 2025-07-27 21:48:33,517 | INFO     | exitcode: 0
[2025-07-27 17:49:05] 2025-07-27 21:48:33,518 | INFO     | exitmsg: OK
[2025-07-27 17:49:05] 2025-07-27 21:48:33,518 | INFO     | cpuconsumptiontime: 38307 s
[2025-07-27 17:49:05] 2025-07-27 21:48:33,518 | INFO     | nevents: 400
[2025-07-27 17:49:05] 2025-07-27 21:48:33,518 | INFO     | neventsw: 0
[2025-07-27 17:49:05] 2025-07-27 21:48:33,518 | INFO     | pid: 4005523
[2025-07-27 17:49:05] 2025-07-27 21:48:33,518 | INFO     | pgrp: 4005523
[2025-07-27 17:49:05] 2025-07-27 21:48:33,518 | INFO     | corecount: 8
[2025-07-27 17:49:05] 2025-07-27 21:48:33,518 | INFO     | event service: False
[2025-07-27 17:49:05] 2025-07-27 21:48:33,518 | INFO     | sizes: {0: 2396647, 1: 2397503, 6: 2397765, 12: 2397793, 5195: 2424018, 5197: 2433016, 5199: 2433200, 5205: 2433422}
[2025-07-27 17:49:05] 2025-07-27 21:48:33,518 | INFO     | --------------------------------------------------
[2025-07-27 17:49:05] 2025-07-27 21:48:33,518 | INFO     | 
[2025-07-27 17:49:05] 2025-07-27 21:48:33,519 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 17:49:05] 2025-07-27 21:48:33,545 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,549 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,549 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,549 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,551 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,551 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,551 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,551 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,551 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,552 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,552 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,552 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,552 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,552 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:49:05] 2025-07-27 21:48:33,552 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,552 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:49:05] 2025-07-27 21:48:33,553 | INFO     | job 6747413847 has completed (purged errors)
[2025-07-27 17:49:05] 2025-07-27 21:48:33,553 | INFO     | overall cleanup function is called
[2025-07-27 17:49:05] 2025-07-27 21:48:33,858 | INFO     | number of running child processes to parent process 4005523: 1
[2025-07-27 17:49:05] 2025-07-27 21:48:33,858 | INFO     | maximum number of monitored processes: 6
[2025-07-27 17:49:05] 2025-07-27 21:48:33,858 | INFO     | aborting job monitoring since job object (job id=6747413847) has expired
[2025-07-27 17:49:05] 2025-07-27 21:48:34,563 | INFO     | --- collectZombieJob: --- 10, [4005523]
[2025-07-27 17:49:05] 2025-07-27 21:48:34,563 | INFO     | zombie collector waiting for pid 4005523
[2025-07-27 17:49:05] 2025-07-27 21:48:34,563 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:49:05] 2025-07-27 21:48:34,563 | INFO     | collected zombie processes
[2025-07-27 17:49:05] 2025-07-27 21:48:34,564 | INFO     | will attempt to kill all subprocesses of pid=4005523
[2025-07-27 17:49:05] 2025-07-27 21:48:34,901 | INFO     | process IDs to be killed: [4005523] (in reverse order)
[2025-07-27 17:49:05] 2025-07-27 21:48:35,002 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:49:05] 2025-07-27 21:48:35,002 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:49:05] 2025-07-27 21:48:35,015 | INFO     | did not find any defunct processes belonging to 4005523
[2025-07-27 17:49:05] 2025-07-27 21:48:35,027 | INFO     | did not find any defunct processes belonging to 4005523
[2025-07-27 17:49:05] 2025-07-27 21:48:35,027 | INFO     | ready for new job
[2025-07-27 17:49:05] 2025-07-27 21:48:35,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:49:05] 2025-07-27 21:48:35,029 | INFO     | ***************************************
[2025-07-27 17:49:05] 2025-07-27 21:48:35,029 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:49:05] 2025-07-27 21:48:35,029 | INFO     | ***************************************
[2025-07-27 17:49:05] 2025-07-27 21:48:35,029 | INFO     | 
[2025-07-27 17:49:05] 2025-07-27 21:48:35,034 | INFO     | architecture information:
[2025-07-27 17:49:05] 2025-07-27 21:48:35,034 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:49:05] 2025-07-27 21:48:35,054 | INFO     | cat /etc/os-release:
[2025-07-27 17:49:05] NAME="CentOS Linux"
[2025-07-27 17:49:05] VERSION="7 (Core)"
[2025-07-27 17:49:05] ID="centos"
[2025-07-27 17:49:05] ID_LIKE="rhel fedora"
[2025-07-27 17:49:05] VERSION_ID="7"
[2025-07-27 17:49:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:49:05] ANSI_COLOR="0;31"
[2025-07-27 17:49:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:49:05] HOME_URL="https://www.centos.org/"
[2025-07-27 17:49:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:49:05] 
[2025-07-27 17:49:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:49:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:49:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:49:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:49:05] 
[2025-07-27 17:49:05] 2025-07-27 21:48:35,056 | INFO     | ***************************************
[2025-07-27 17:49:05] 2025-07-27 21:48:35,558 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 17:49:05] 2025-07-27 21:48:35,578 | INFO     | sufficient remaining disk space (128860553216 B)
[2025-07-27 17:49:05] 2025-07-27 21:48:35,578 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:49:05] 2025-07-27 21:48:35,578 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:49:05] 2025-07-27 21:48:35,578 | INFO     | update_server=False
[2025-07-27 17:49:05] 2025-07-27 21:48:35,578 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:49:05] 2025-07-27 21:48:35,579 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:49:05] 2025-07-27 21:48:35,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:49:05] 2025-07-27 21:48:35,580 | INFO     | aborting loop
[2025-07-27 17:49:05] 2025-07-27 21:48:35,843 | INFO     | all payload control threads have been joined
[2025-07-27 17:49:05] 2025-07-27 21:48:36,583 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:36,584 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:36,644 | INFO     | all data control threads have been joined
[2025-07-27 17:49:05] 2025-07-27 21:48:36,848 | INFO     | [payload] control thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:37,141 | INFO     | all job control threads have been joined
[2025-07-27 17:49:05] 2025-07-27 21:48:37,329 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:37,483 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:37,493 | INFO     | [job] validate thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:37,583 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:37,645 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:37,649 | INFO     | [data] control thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:37,683 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:49:05] 2025-07-27 21:48:37,743 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:37,952 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:38,027 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:38,146 | INFO     | [job] control thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:38,521 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:49:05] 2025-07-27 21:48:39,526 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:41,688 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:46,224 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:49:05] 2025-07-27 21:48:47,229 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:49:05] 2025-07-27 21:48:47,576 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140449414264640)>', '<ExcThread(monitor, started 140448777627392)>']
[2025-07-27 17:49:05] 2025-07-27 21:48:52,601 | INFO     | all workflow threads have been joined
[2025-07-27 17:49:05] 2025-07-27 21:48:52,601 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:49:05] 2025-07-27 21:48:52,601 | INFO     | traces error code: 0
[2025-07-27 17:49:05] 2025-07-27 21:48:52,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:49:05] 2025-07-27 21:49:05,408 | INFO     | PID=3998747 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:49:05] 2025-07-27 21:49:05,408 | INFO     | .. there are 15 such processes running
[2025-07-27 17:49:05] 2025-07-27 21:49:05,409 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:49:05] 2025-07-27 21:49:05,409 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:49:05] 2025-07-27 21:49:05,409 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:49:05] 2025-07-27 21:49:05,409 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:49:05] 2025-07-27 21:49:05,409 | INFO     | [monitor] control thread has ended
[2025-07-27 17:49:05] 2025-07-27 21:49:05,547 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:49:05] 2025-07-27 21:49:05,551 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:49:05] 2025-07-27 21:49:05,556 [wrapper] pilotpid: 3998747
[2025-07-27 17:49:05] 2025-07-27 21:49:05,559 [wrapper] Pilot exit status: 0
[2025-07-27 17:49:05] 2025-07-27 21:49:05,574 [wrapper] pandaids: 6747413847
[2025-07-27 17:49:05] 2025-07-27 21:49:05,655 [wrapper] cleanup supervisor_pilot 4153567 3998748
[2025-07-27 17:49:05] 2025-07-27 21:49:05,659 [wrapper] Test setup, not cleaning
[2025-07-27 17:49:05] 2025-07-27 21:49:05,663 [wrapper] apfmon messages muted
[2025-07-27 17:49:05] 2025-07-27 21:49:05,667 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:49:05] 2025-07-27 21:49:05,673 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:49:05]  *** Error codes and diagnostics ***
[2025-07-27 17:49:05]     "exeErrorCode": 0,
[2025-07-27 17:49:05]     "exeErrorDiag": "",
[2025-07-27 17:49:05]     "pilotErrorCode": 0,
[2025-07-27 17:49:05]     "pilotErrorDiag": "",
[2025-07-27 17:49:05]  *** Listing of results directory ***
[2025-07-27 17:49:05] total 346428
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:52 queuedata.json
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 17:49:05] -rwx------. 1 boincer umatlas     36292 Jul 27 10:53 runpilot2-wrapper.sh
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:49:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:21 run_atlas
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:21 job.xml
[2025-07-27 17:49:05] -rw-r--r--. 2 boincer umatlas 143255182 Jul 27 16:21 EVNT.45743347._002799.pool.root.1
[2025-07-27 17:49:05] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:21 shared
[2025-07-27 17:49:05] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 16:21 input.tar.gz
[2025-07-27 17:49:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:21 start_atlas.sh
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:21 boinc_lockfile
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 16:21 pandaJob.out
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas    980109 Jul 27 16:21 agis_schedconf.cvmfs.json
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:21 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:49:05] drwx------. 4 boincer umatlas      4096 Jul 27 16:21 pilot3
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas      6944 Jul 27 17:36 init_data.xml
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas 205983714 Jul 27 17:47 HITS.45743349._050273.pool.root.1
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:47 boinc_task_state.xml
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas      1027 Jul 27 17:48 memory_monitor_summary.json
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas    308564 Jul 27 17:48 log.45743349._050273.job.log.tgz.1
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas      7771 Jul 27 17:48 heartbeat.json
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:49 boinc_mmap_file
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:49 wrapper_checkpoint.txt
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas        95 Jul 27 17:49 pilot_heartbeat.json
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas       823 Jul 27 17:49 pilotlog.txt
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas    506507 Jul 27 17:49 log.45743349._050273.job.log.1
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas       357 Jul 27 17:49 output.list
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:49 runtime_log
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas    829440 Jul 27 17:49 result.tar.gz
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 17:49 runtime_log.err
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas       651 Jul 27 17:49 FNoKDmhvH07n9Rq4apOajLDm4fhM0noT9bVof3QYDmQi2KDm3enwdn.diag
[2025-07-27 17:49:05] -rw-r--r--. 1 boincer umatlas     22642 Jul 27 17:49 stderr.txt
[2025-07-27 17:49:05] HITS file was successfully produced:
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas 205983714 Jul 27 17:47 shared/HITS.pool.root.1
[2025-07-27 17:49:05]  *** Contents of shared directory: ***
[2025-07-27 17:49:05] total 342424
[2025-07-27 17:49:05] -rw-r--r--. 2 boincer umatlas 143255182 Jul 27 16:21 ATLAS.root_0
[2025-07-27 17:49:05] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 16:21 input.tar.gz
[2025-07-27 17:49:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:21 start_atlas.sh
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas 205983714 Jul 27 17:47 HITS.pool.root.1
[2025-07-27 17:49:05] -rw-------. 1 boincer umatlas    829440 Jul 27 17:49 result.tar.gz
17:49:07 (3995162): run_atlas exited; CPU time 38444.198016
17:49:07 (3995162): called boinc_finish(0)

</stderr_txt>
]]>

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