Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:55:56 (796937): wrapper (7.7.26015): starting
17:55:56 (796937): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 17:55:56] Arguments: --nthreads 12
[2025-07-27 17:55:56] Threads: 12
[2025-07-27 17:55:56] Checking for CVMFS
[2025-07-27 17:55:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:55:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:55:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:55:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:55:57] 2.12.6.0 999403 18932 278200 148825 2 333 27916857 32935936 9746 16776704 0 45978984 99.528 67790616 31366 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 17:55:57] CVMFS is ok
[2025-07-27 17:55:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:55:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:55:57] Further information can be found at the LHC@home message board.
[2025-07-27 17:55:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:55:57] Checking for apptainer binary...
[2025-07-27 17:55:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:55:57] Running /usr/bin/apptainer --version
[2025-07-27 17:55:57] apptainer version 1.4.1-1.el9
[2025-07-27 17:55:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:55:57] c6-2-29-4.aglt2.org
[2025-07-27 17:55:57] apptainer works
[2025-07-27 17:55:57] Set ATHENA_PROC_NUMBER=12
[2025-07-27 17:55:57] Set ATHENA_CORE_NUMBER=12
[2025-07-27 17:55:57] Starting ATLAS job with PandaID=6747413858
[2025-07-27 17:55:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:36:05]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:36:05]  lfn=log.45743349._050284.job.log.tgz.1
[2025-07-27 19:36:05]  mtime=0
[2025-07-27 19:36:05]  protocol_id=None
[2025-07-27 19:36:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 19:36:05]  replicas=None
[2025-07-27 19:36:05]  scope=mc23_13p6TeV
[2025-07-27 19:36:05]  status=None
[2025-07-27 19:36:05]  status_code=0
[2025-07-27 19:36:05]  storage_token=
[2025-07-27 19:36:05]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747413858/log.45743349._050284.job.log.tgz.1
[2025-07-27 19:36:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/6d/log.45743349._050284.job.log.tgz.1
[2025-07-27 19:36:05]  workdir=None
[2025-07-27 19:36:05] ]
[2025-07-27 19:36:05] 2025-07-27 23:35:26,779 | INFO     | transferring file log.45743349._050284.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747413858/log.45743349._050284.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:36:05] 2025-07-27 23:35:26,779 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747413858/log.45743349._050284.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._050284.job
[2025-07-27 19:36:05] 2025-07-27 23:35:26,797 | INFO     | adding to output.list: log.45743349._050284.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/6d/log.45743349._050284.job.log.tg
[2025-07-27 19:36:05] 2025-07-27 23:35:26,798 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:36:05] 2025-07-27 23:35:26,798 | INFO     | summary of transferred files:
[2025-07-27 19:36:05] 2025-07-27 23:35:26,798 | INFO     |  -- lfn=log.45743349._050284.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:36:05] 2025-07-27 23:35:26,798 | INFO     | stage-out finished correctly
[2025-07-27 19:36:05] 2025-07-27 23:35:28,482 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:36:05] 2025-07-27 23:35:28,902 | INFO     | job 6747413858 has state=finished
[2025-07-27 19:36:05] 2025-07-27 23:35:28,902 | INFO     | preparing for final server update for job 6747413858 in state='finished'
[2025-07-27 19:36:05] 2025-07-27 23:35:28,903 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:36:05] 2025-07-27 23:35:28,903 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:36:05] 2025-07-27 23:35:28,903 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:36:05] 2025-07-27 23:35:28,904 | INFO     | job 6747413858 has finished - writing final server update
[2025-07-27 19:36:05] 2025-07-27 23:35:28,904 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:36:05] 2025-07-27 23:35:28,905 | INFO     | executing command: lscpu
[2025-07-27 19:36:05] 2025-07-27 23:35:28,963 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:36:05] 2025-07-27 23:35:30,168 | WARNING  | process 809310 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 19:36:05] 2025-07-27 23:35:30,168 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747413858/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:36:05] 2025-07-27 23:35:30,392 | INFO     | number of running child processes to parent process 809310: 1
[2025-07-27 19:36:05] 2025-07-27 23:35:30,392 | INFO     | maximum number of monitored processes: 6
[2025-07-27 19:36:05] 2025-07-27 23:35:32,895 | INFO     | monitor loop #434: job 0:6747413858 is in state 'finished'
[2025-07-27 19:36:05] 2025-07-27 23:35:32,895 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:36:05] 2025-07-27 23:35:33,512 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 19:36:05] 2025-07-27 23:35:33,523 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2865.8002142857144
[2025-07-27 19:36:05] 2025-07-27 23:35:33,536 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747413858/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:36:05] 2025-07-27 23:35:33,537 | INFO     | extracted standard info from prmon json
[2025-07-27 19:36:05] 2025-07-27 23:35:33,537 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:36:05] 2025-07-27 23:35:33,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:36:05] 2025-07-27 23:35:33,537 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:36:05] 2025-07-27 23:35:33,537 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:36:05] 2025-07-27 23:35:33,539 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:36:05] 2025-07-27 23:35:33,539 | INFO     | sum of square deviations: 226022842.5
[2025-07-27 19:36:05] 2025-07-27 23:35:33,540 | INFO     | sum of deviations: 4762156692.5
[2025-07-27 19:36:05] 2025-07-27 23:35:33,540 | INFO     | mean x: 1753656426.5
[2025-07-27 19:36:05] 2025-07-27 23:35:33,540 | INFO     | mean y: 2339084.677777778
[2025-07-27 19:36:05] 2025-07-27 23:35:33,540 | INFO     | -- intersect: -36946079913.29411
[2025-07-27 19:36:05] 2025-07-27 23:35:33,540 | INFO     | intersect: -36946079913.29411
[2025-07-27 19:36:05] 2025-07-27 23:35:33,540 | INFO     | chi2: 0.07024816868609671
[2025-07-27 19:36:05] 2025-07-27 23:35:33,540 | INFO     | -- intersect: -36946079913.29411
[2025-07-27 19:36:05] 2025-07-27 23:35:33,540 | INFO     | current memory leak: 21.07 B/s (using 90 data points, chi2=0.07)
[2025-07-27 19:36:05] 2025-07-27 23:35:33,540 | INFO     | could have reported an average CPU frequency of 2782 MHz (7 samples)
[2025-07-27 19:36:05] 2025-07-27 23:35:33,541 | INFO     | ..............................
[2025-07-27 19:36:05] 2025-07-27 23:35:33,541 | INFO     | . Timing measurements:
[2025-07-27 19:36:05] 2025-07-27 23:35:33,541 | INFO     | . get job = 0 s
[2025-07-27 19:36:05] 2025-07-27 23:35:33,541 | INFO     | . initial setup = 2 s
[2025-07-27 19:36:05] 2025-07-27 23:35:33,541 | INFO     | . payload setup = 10 s
[2025-07-27 19:36:05] 2025-07-27 23:35:33,541 | INFO     | . stage-in = 0 s
[2025-07-27 19:36:05] 2025-07-27 23:35:33,541 | INFO     | . payload execution = 5922 s
[2025-07-27 19:36:05] 2025-07-27 23:35:33,541 | INFO     | . stage-out = 0 s
[2025-07-27 19:36:05] 2025-07-27 23:35:33,541 | INFO     | . log creation = 0 s
[2025-07-27 19:36:05] 2025-07-27 23:35:33,541 | INFO     | ..............................
[2025-07-27 19:36:05] 2025-07-27 23:35:33,612 | INFO     | 
[2025-07-27 19:36:05] 2025-07-27 23:35:33,612 | INFO     | job summary report
[2025-07-27 19:36:05] 2025-07-27 23:35:33,612 | INFO     | --------------------------------------------------
[2025-07-27 19:36:05] 2025-07-27 23:35:33,612 | INFO     | PanDA job id: 6747413858
[2025-07-27 19:36:05] 2025-07-27 23:35:33,612 | INFO     | task id: 45743349
[2025-07-27 19:36:05] 2025-07-27 23:35:33,612 | INFO     | errors: (none)
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | pilot state: finished 
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | transexitcode: 0
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | exeerrorcode: 0
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | exeerrordiag: 
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | exitcode: 0
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | exitmsg: OK
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | cpuconsumptiontime: 49483 s
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | nevents: 400
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | neventsw: 0
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | pid: 809310
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | pgrp: 809310
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | corecount: 12
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | event service: False
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | sizes: {0: 2397475, 1: 2397475, 6: 2397765, 11: 2397793, 5936: 2424438, 5937: 2433436, 5939: 2433620, 5944: 2433814}
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | --------------------------------------------------
[2025-07-27 19:36:05] 2025-07-27 23:35:33,613 | INFO     | 
[2025-07-27 19:36:05] 2025-07-27 23:35:33,614 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 19:36:05] 2025-07-27 23:35:33,637 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,637 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,637 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:36:05] 2025-07-27 23:35:33,638 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,639 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:36:05] 2025-07-27 23:35:33,639 | INFO     | job 6747413858 has completed (purged errors)
[2025-07-27 19:36:05] 2025-07-27 23:35:33,639 | INFO     | overall cleanup function is called
[2025-07-27 19:36:05] 2025-07-27 23:35:34,648 | INFO     | --- collectZombieJob: --- 10, [809310]
[2025-07-27 19:36:05] 2025-07-27 23:35:34,648 | INFO     | zombie collector waiting for pid 809310
[2025-07-27 19:36:05] 2025-07-27 23:35:34,648 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:36:05] 2025-07-27 23:35:34,648 | INFO     | collected zombie processes
[2025-07-27 19:36:05] 2025-07-27 23:35:34,648 | INFO     | will attempt to kill all subprocesses of pid=809310
[2025-07-27 19:36:05] 2025-07-27 23:35:34,878 | INFO     | process IDs to be killed: [809310] (in reverse order)
[2025-07-27 19:36:05] 2025-07-27 23:35:34,962 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:36:05] 2025-07-27 23:35:34,963 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:36:05] 2025-07-27 23:35:34,974 | INFO     | did not find any defunct processes belonging to 809310
[2025-07-27 19:36:05] 2025-07-27 23:35:34,984 | INFO     | did not find any defunct processes belonging to 809310
[2025-07-27 19:36:05] 2025-07-27 23:35:34,985 | INFO     | ready for new job
[2025-07-27 19:36:05] 2025-07-27 23:35:34,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:36:05] 2025-07-27 23:35:34,987 | INFO     | ***************************************
[2025-07-27 19:36:05] 2025-07-27 23:35:34,987 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:36:05] 2025-07-27 23:35:34,987 | INFO     | ***************************************
[2025-07-27 19:36:05] 2025-07-27 23:35:34,987 | INFO     | 
[2025-07-27 19:36:05] 2025-07-27 23:35:35,004 | INFO     | architecture information:
[2025-07-27 19:36:05] 2025-07-27 23:35:35,004 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:36:05] 2025-07-27 23:35:35,020 | INFO     | cat /etc/os-release:
[2025-07-27 19:36:05] NAME="CentOS Linux"
[2025-07-27 19:36:05] VERSION="7 (Core)"
[2025-07-27 19:36:05] ID="centos"
[2025-07-27 19:36:05] ID_LIKE="rhel fedora"
[2025-07-27 19:36:05] VERSION_ID="7"
[2025-07-27 19:36:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:36:05] ANSI_COLOR="0;31"
[2025-07-27 19:36:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:36:05] HOME_URL="https://www.centos.org/"
[2025-07-27 19:36:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:36:05] 
[2025-07-27 19:36:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:36:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:36:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:36:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:36:05] 
[2025-07-27 19:36:05] 2025-07-27 23:35:35,021 | INFO     | ***************************************
[2025-07-27 19:36:05] 2025-07-27 23:35:35,524 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 19:36:05] 2025-07-27 23:35:35,544 | INFO     | sufficient remaining disk space (76543950848 B)
[2025-07-27 19:36:05] 2025-07-27 23:35:35,544 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:36:05] 2025-07-27 23:35:35,544 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:36:05] 2025-07-27 23:35:35,544 | INFO     | update_server=False
[2025-07-27 19:36:05] 2025-07-27 23:35:35,545 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:36:05] 2025-07-27 23:35:35,545 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:36:05] 2025-07-27 23:35:35,546 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:36:05] 2025-07-27 23:35:35,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:36:05] 2025-07-27 23:35:36,275 | INFO     | all data control threads have been joined
[2025-07-27 19:36:05] 2025-07-27 23:35:36,403 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:36:05] 2025-07-27 23:35:36,403 | INFO     | aborting loop
[2025-07-27 19:36:05] 2025-07-27 23:35:36,549 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:36,551 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:36,644 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:36,836 | INFO     | all payload control threads have been joined
[2025-07-27 19:36:05] 2025-07-27 23:35:36,935 | INFO     | all job control threads have been joined
[2025-07-27 19:36:05] 2025-07-27 23:35:36,949 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:36,970 | INFO     | [job] validate thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:37,280 | INFO     | [data] control thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:37,408 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:37,428 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:37,431 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:37,452 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:37,552 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:37,717 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:37,841 | INFO     | [payload] control thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:37,940 | INFO     | [job] control thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:39,551 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:45,987 | INFO     | job.realtimelogging is not enabled
[2025-07-27 19:36:05] 2025-07-27 23:35:46,992 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:36:05] 2025-07-27 23:35:47,316 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695571199808)>', '<ExcThread(monitor, started 139694935365376)>']
[2025-07-27 19:36:05] 2025-07-27 23:35:52,341 | INFO     | all workflow threads have been joined
[2025-07-27 19:36:05] 2025-07-27 23:35:52,341 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:36:05] 2025-07-27 23:35:52,342 | INFO     | traces error code: 0
[2025-07-27 19:36:05] 2025-07-27 23:35:52,342 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:36:05] 2025-07-27 23:36:05,023 | INFO     | PID=801337 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 19:36:05] 2025-07-27 23:36:05,024 | INFO     | .. there are 8 such processes running
[2025-07-27 19:36:05] 2025-07-27 23:36:05,024 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:36:05] 2025-07-27 23:36:05,024 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:36:05] 2025-07-27 23:36:05,024 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:36:05] 2025-07-27 23:36:05,024 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:36:05] 2025-07-27 23:36:05,024 | INFO     | [monitor] control thread has ended
[2025-07-27 19:36:05] 2025-07-27 23:36:05,172 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:36:05] 2025-07-27 23:36:05,174 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:36:05] 2025-07-27 23:36:05,176 [wrapper] pilotpid: 801337
[2025-07-27 19:36:05] 2025-07-27 23:36:05,179 [wrapper] Pilot exit status: 0
[2025-07-27 19:36:05] 2025-07-27 23:36:05,191 [wrapper] pandaids: 6747413858
[2025-07-27 19:36:05] 2025-07-27 23:36:05,270 [wrapper] cleanup supervisor_pilot 1043563 801338
[2025-07-27 19:36:05] 2025-07-27 23:36:05,274 [wrapper] Test setup, not cleaning
[2025-07-27 19:36:05] 2025-07-27 23:36:05,279 [wrapper] apfmon messages muted
[2025-07-27 19:36:05] 2025-07-27 23:36:05,283 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:36:05] 2025-07-27 23:36:05,287 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:36:05]  *** Error codes and diagnostics ***
[2025-07-27 19:36:05]     "exeErrorCode": 0,
[2025-07-27 19:36:05]     "exeErrorDiag": "",
[2025-07-27 19:36:05]     "pilotErrorCode": 0,
[2025-07-27 19:36:05]     "pilotErrorDiag": "",
[2025-07-27 19:36:05]  *** Listing of results directory ***
[2025-07-27 19:36:05] total 351796
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:52 queuedata.json
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 19:36:05] -rwx------. 1 boincer umatlas     36292 Jul 27 10:53 runpilot2-wrapper.sh
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:36:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:55 run_atlas
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:55 job.xml
[2025-07-27 19:36:05] -rw-r--r--. 2 boincer umatlas 143833427 Jul 27 17:55 EVNT.45743347._002800.pool.root.1
[2025-07-27 19:36:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:55 start_atlas.sh
[2025-07-27 19:36:05] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:55 shared
[2025-07-27 19:36:05] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 17:55 input.tar.gz
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:55 boinc_lockfile
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 17:55 pandaJob.out
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas    980117 Jul 27 17:56 agis_schedconf.cvmfs.json
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:56 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:36:05] drwx------. 4 boincer umatlas      4096 Jul 27 17:56 pilot3
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 19:27 init_data.xml
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas 210642440 Jul 27 19:34 HITS.45743349._050284.pool.root.1
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:34 boinc_task_state.xml
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas        95 Jul 27 19:35 pilot_heartbeat.json
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas      1035 Jul 27 19:35 memory_monitor_summary.json
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas    373462 Jul 27 19:35 log.45743349._050284.job.log.tgz.1
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas      7818 Jul 27 19:35 heartbeat.json
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:35 wrapper_checkpoint.txt
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:35 boinc_mmap_file
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas       821 Jul 27 19:36 pilotlog.txt
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas    571594 Jul 27 19:36 log.45743349._050284.job.log.1
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas       357 Jul 27 19:36 output.list
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:36 runtime_log
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas    962560 Jul 27 19:36 result.tar.gz
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 19:36 runtime_log.err
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas       654 Jul 27 19:36 9v1KDmhvH07n9Rq4apOajLDm4fhM0noT9bVof3QYDmai2KDmmze6No.diag
[2025-07-27 19:36:05] -rw-r--r--. 1 boincer umatlas     21664 Jul 27 19:36 stderr.txt
[2025-07-27 19:36:05] HITS file was successfully produced:
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas 210642440 Jul 27 19:34 shared/HITS.pool.root.1
[2025-07-27 19:36:05]  *** Contents of shared directory: ***
[2025-07-27 19:36:05] total 347664
[2025-07-27 19:36:05] -rw-r--r--. 2 boincer umatlas 143833427 Jul 27 17:55 ATLAS.root_0
[2025-07-27 19:36:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:55 start_atlas.sh
[2025-07-27 19:36:05] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 17:55 input.tar.gz
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas 210642440 Jul 27 19:34 HITS.pool.root.1
[2025-07-27 19:36:05] -rw-------. 1 boincer umatlas    962560 Jul 27 19:36 result.tar.gz
19:36:06 (796937): run_atlas exited; CPU time 49512.461343
19:36:06 (796937): called boinc_finish(0)

</stderr_txt>
]]>

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