Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:28:33 (725752): wrapper (7.7.26015): starting
17:28:33 (725752): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 17:28:33] Arguments: --nthreads 12
[2025-07-27 17:28:33] Threads: 12
[2025-07-27 17:28:33] Checking for CVMFS
[2025-07-27 17:28:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:28:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:28:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:28:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:28:34] 2.13.0.0 1190652 18905 332448 148825 0 135 20695165 32935936 6521 16776704 0 33997623 99.724 58083750 29267 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 17:28:34] CVMFS is ok
[2025-07-27 17:28:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:28:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:28:34] Further information can be found at the LHC@home message board.
[2025-07-27 17:28:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:28:34] Checking for apptainer binary...
[2025-07-27 17:28:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:28:34] Running /usr/bin/apptainer --version
[2025-07-27 17:28:34] apptainer version 1.4.1-1.el9
[2025-07-27 17:28:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:28:34] c6-1-26-3.aglt2.org
[2025-07-27 17:28:34] apptainer works
[2025-07-27 17:28:34] Set ATHENA_PROC_NUMBER=12
[2025-07-27 17:28:34] Set ATHENA_CORE_NUMBER=12
[2025-07-27 17:28:34] Starting ATLAS job with PandaID=6747437700
[2025-07-27 17:28:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:46:34]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:46:34]  is_tar=False
[2025-07-27 18:46:34]  lfn=log.45743349._050339.job.log.tgz.1
[2025-07-27 18:46:34]  mtime=0
[2025-07-27 18:46:34]  protocol_id=None
[2025-07-27 18:46:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:46:34]  replicas=None
[2025-07-27 18:46:34]  scope=mc23_13p6TeV
[2025-07-27 18:46:34]  status=None
[2025-07-27 18:46:34]  status_code=0
[2025-07-27 18:46:34]  storage_token=
[2025-07-27 18:46:34]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747437700/log.45743349._050339.job.log.tgz.1
[2025-07-27 18:46:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/2d/log.45743349._050339.job.log.tgz.1
[2025-07-27 18:46:34]  workdir=None
[2025-07-27 18:46:34] ]
[2025-07-27 18:46:34] 2025-07-27 22:45:54,825 | INFO     | transferring file log.45743349._050339.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747437700/log.45743349._050339.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 18:46:34] 2025-07-27 22:45:54,825 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747437700/log.45743349._050339.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._050339.job
[2025-07-27 18:46:34] 2025-07-27 22:45:54,847 | INFO     | adding to output.list: log.45743349._050339.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/2d/log.45743349._050339.job.log.tg
[2025-07-27 18:46:34] 2025-07-27 22:45:54,849 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:46:34] 2025-07-27 22:45:54,849 | INFO     | summary of transferred files:
[2025-07-27 18:46:34] 2025-07-27 22:45:54,849 | INFO     |  -- lfn=log.45743349._050339.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:46:34] 2025-07-27 22:45:54,850 | INFO     | stage-out finished correctly
[2025-07-27 18:46:34] 2025-07-27 22:45:54,942 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:46:34] 2025-07-27 22:45:56,376 | INFO     | job 6747437700 has state=finished
[2025-07-27 18:46:34] 2025-07-27 22:45:56,376 | INFO     | preparing for final server update for job 6747437700 in state='finished'
[2025-07-27 18:46:34] 2025-07-27 22:45:56,377 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:46:34] 2025-07-27 22:45:56,378 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:46:34] 2025-07-27 22:45:56,378 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:46:34] 2025-07-27 22:45:56,378 | INFO     | job 6747437700 has finished - writing final server update
[2025-07-27 18:46:34] 2025-07-27 22:45:56,378 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:46:34] 2025-07-27 22:45:56,380 | INFO     | executing command: lscpu
[2025-07-27 18:46:34] 2025-07-27 22:45:56,435 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:46:34] 2025-07-27 22:45:57,055 | INFO     | monitor loop #344: job 0:6747437700 is in state 'finished'
[2025-07-27 18:46:34] 2025-07-27 22:45:57,055 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:46:34] 2025-07-27 22:45:59,558 | INFO     | monitor loop #345: job 0:6747437700 is in state 'finished'
[2025-07-27 18:46:34] 2025-07-27 22:45:59,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:46:34] 2025-07-27 22:45:59,872 | INFO     | PID=729512 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:46:34] 2025-07-27 22:45:59,872 | INFO     | .. there are 9 such processes running
[2025-07-27 18:46:34] 2025-07-27 22:46:01,598 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 18:46:34] 2025-07-27 22:46:01,613 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2665.850714285714
[2025-07-27 18:46:34] 2025-07-27 22:46:01,636 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747437700/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:46:34] 2025-07-27 22:46:01,636 | INFO     | extracted standard info from prmon json
[2025-07-27 18:46:34] 2025-07-27 22:46:01,637 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:46:34] 2025-07-27 22:46:01,637 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:46:34] 2025-07-27 22:46:01,637 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:46:34] 2025-07-27 22:46:01,637 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:46:34] 2025-07-27 22:46:01,639 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:46:34] 2025-07-27 22:46:01,639 | INFO     | sum of square deviations: 101843770.0
[2025-07-27 18:46:34] 2025-07-27 22:46:01,639 | INFO     | sum of deviations: -13535704068.0
[2025-07-27 18:46:34] 2025-07-27 22:46:01,640 | INFO     | mean x: 1753654133.0
[2025-07-27 18:46:34] 2025-07-27 22:46:01,640 | INFO     | mean y: 2569746.4782608696
[2025-07-27 18:46:34] 2025-07-27 22:46:01,640 | INFO     | -- intersect: 233074689738.82645
[2025-07-27 18:46:34] 2025-07-27 22:46:01,640 | INFO     | intersect: 233074689738.82645
[2025-07-27 18:46:34] 2025-07-27 22:46:01,640 | INFO     | chi2: 0.11999009094926191
[2025-07-27 18:46:34] 2025-07-27 22:46:01,640 | INFO     | -- intersect: 233074689738.82645
[2025-07-27 18:46:34] 2025-07-27 22:46:01,640 | INFO     | current memory leak: -132.91 B/s (using 69 data points, chi2=0.12)
[2025-07-27 18:46:34] 2025-07-27 22:46:01,640 | INFO     | could have reported an average CPU frequency of 2663 MHz (6 samples)
[2025-07-27 18:46:34] 2025-07-27 22:46:01,641 | INFO     | ..............................
[2025-07-27 18:46:34] 2025-07-27 22:46:01,641 | INFO     | . Timing measurements:
[2025-07-27 18:46:34] 2025-07-27 22:46:01,641 | INFO     | . get job = 0 s
[2025-07-27 18:46:34] 2025-07-27 22:46:01,641 | INFO     | . initial setup = 2 s
[2025-07-27 18:46:34] 2025-07-27 22:46:01,641 | INFO     | . payload setup = 7 s
[2025-07-27 18:46:34] 2025-07-27 22:46:01,641 | INFO     | . stage-in = 0 s
[2025-07-27 18:46:34] 2025-07-27 22:46:01,641 | INFO     | . payload execution = 4601 s
[2025-07-27 18:46:34] 2025-07-27 22:46:01,641 | INFO     | . stage-out = 0 s
[2025-07-27 18:46:34] 2025-07-27 22:46:01,641 | INFO     | . log creation = 0 s
[2025-07-27 18:46:34] 2025-07-27 22:46:01,641 | INFO     | ..............................
[2025-07-27 18:46:34] 2025-07-27 22:46:01,730 | INFO     | 
[2025-07-27 18:46:34] 2025-07-27 22:46:01,730 | INFO     | job summary report
[2025-07-27 18:46:34] 2025-07-27 22:46:01,730 | INFO     | --------------------------------------------------
[2025-07-27 18:46:34] 2025-07-27 22:46:01,730 | INFO     | PanDA job id: 6747437700
[2025-07-27 18:46:34] 2025-07-27 22:46:01,730 | INFO     | task id: 45743349
[2025-07-27 18:46:34] 2025-07-27 22:46:01,730 | INFO     | errors: (none)
[2025-07-27 18:46:34] 2025-07-27 22:46:01,730 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:46:34] 2025-07-27 22:46:01,731 | INFO     | pilot state: finished 
[2025-07-27 18:46:34] 2025-07-27 22:46:01,731 | INFO     | transexitcode: 0
[2025-07-27 18:46:34] 2025-07-27 22:46:01,731 | INFO     | exeerrorcode: 0
[2025-07-27 18:46:34] 2025-07-27 22:46:01,731 | INFO     | exeerrordiag: 
[2025-07-27 18:46:34] 2025-07-27 22:46:01,731 | INFO     | exitcode: 0
[2025-07-27 18:46:34] 2025-07-27 22:46:01,731 | INFO     | exitmsg: OK
[2025-07-27 18:46:34] 2025-07-27 22:46:01,731 | INFO     | cpuconsumptiontime: 50435 s
[2025-07-27 18:46:34] 2025-07-27 22:46:01,731 | INFO     | nevents: 400
[2025-07-27 18:46:34] 2025-07-27 22:46:01,731 | INFO     | neventsw: 0
[2025-07-27 18:46:34] 2025-07-27 22:46:01,731 | INFO     | pid: 740660
[2025-07-27 18:46:34] 2025-07-27 22:46:01,732 | INFO     | pgrp: 740660
[2025-07-27 18:46:34] 2025-07-27 22:46:01,732 | INFO     | corecount: 12
[2025-07-27 18:46:34] 2025-07-27 22:46:01,732 | INFO     | event service: False
[2025-07-27 18:46:34] 2025-07-27 22:46:01,732 | INFO     | sizes: {0: 2397252, 1: 2397451, 5: 2397713, 11: 2397769, 4612: 2423874, 4613: 2433056, 4620: 2433194}
[2025-07-27 18:46:34] 2025-07-27 22:46:01,732 | INFO     | --------------------------------------------------
[2025-07-27 18:46:34] 2025-07-27 22:46:01,732 | INFO     | 
[2025-07-27 18:46:34] 2025-07-27 22:46:01,732 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 18:46:34] 2025-07-27 22:46:01,757 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,758 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,758 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,759 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,759 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,759 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,759 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,760 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,760 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:46:34] 2025-07-27 22:46:01,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:46:34] 2025-07-27 22:46:01,760 | INFO     | job 6747437700 has completed (purged errors)
[2025-07-27 18:46:34] 2025-07-27 22:46:01,760 | INFO     | overall cleanup function is called
[2025-07-27 18:46:34] 2025-07-27 22:46:02,769 | INFO     | --- collectZombieJob: --- 10, [740660]
[2025-07-27 18:46:34] 2025-07-27 22:46:02,769 | INFO     | zombie collector waiting for pid 740660
[2025-07-27 18:46:34] 2025-07-27 22:46:02,770 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:46:34] 2025-07-27 22:46:02,770 | INFO     | collected zombie processes
[2025-07-27 18:46:34] 2025-07-27 22:46:02,770 | INFO     | will attempt to kill all subprocesses of pid=740660
[2025-07-27 18:46:34] 2025-07-27 22:46:03,045 | INFO     | process IDs to be killed: [740660] (in reverse order)
[2025-07-27 18:46:34] 2025-07-27 22:46:03,170 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:46:34] 2025-07-27 22:46:03,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:46:34] 2025-07-27 22:46:03,183 | INFO     | did not find any defunct processes belonging to 740660
[2025-07-27 18:46:34] 2025-07-27 22:46:03,193 | INFO     | did not find any defunct processes belonging to 740660
[2025-07-27 18:46:34] 2025-07-27 22:46:03,193 | INFO     | ready for new job
[2025-07-27 18:46:34] 2025-07-27 22:46:03,194 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:46:34] 2025-07-27 22:46:03,196 | INFO     | ***************************************
[2025-07-27 18:46:34] 2025-07-27 22:46:03,196 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:46:34] 2025-07-27 22:46:03,196 | INFO     | ***************************************
[2025-07-27 18:46:34] 2025-07-27 22:46:03,196 | INFO     | 
[2025-07-27 18:46:34] 2025-07-27 22:46:03,212 | INFO     | architecture information:
[2025-07-27 18:46:34] 2025-07-27 22:46:03,213 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:46:34] 2025-07-27 22:46:03,231 | INFO     | cat /etc/os-release:
[2025-07-27 18:46:34] NAME="CentOS Linux"
[2025-07-27 18:46:34] VERSION="7 (Core)"
[2025-07-27 18:46:34] ID="centos"
[2025-07-27 18:46:34] ID_LIKE="rhel fedora"
[2025-07-27 18:46:34] VERSION_ID="7"
[2025-07-27 18:46:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:46:34] ANSI_COLOR="0;31"
[2025-07-27 18:46:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:46:34] HOME_URL="https://www.centos.org/"
[2025-07-27 18:46:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:46:34] 
[2025-07-27 18:46:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:46:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:46:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:46:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:46:34] 
[2025-07-27 18:46:34] 2025-07-27 22:46:03,231 | INFO     | ***************************************
[2025-07-27 18:46:34] 2025-07-27 22:46:03,734 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 18:46:34] 2025-07-27 22:46:03,754 | INFO     | sufficient remaining disk space (76266078208 B)
[2025-07-27 18:46:34] 2025-07-27 22:46:03,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:46:34] 2025-07-27 22:46:03,755 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:46:34] 2025-07-27 22:46:03,755 | INFO     | update_server=False
[2025-07-27 18:46:34] 2025-07-27 22:46:03,755 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:46:34] 2025-07-27 22:46:03,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:46:34] 2025-07-27 22:46:03,756 | INFO     | aborting loop
[2025-07-27 18:46:34] 2025-07-27 22:46:03,756 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:46:34] 2025-07-27 22:46:04,089 | INFO     | all data control threads have been joined
[2025-07-27 18:46:34] 2025-07-27 22:46:04,760 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:04,762 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:04,776 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:04,800 | INFO     | all payload control threads have been joined
[2025-07-27 18:46:34] 2025-07-27 22:46:05,061 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:05,094 | INFO     | [data] control thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:05,154 | INFO     | all job control threads have been joined
[2025-07-27 18:46:34] 2025-07-27 22:46:05,445 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:05,573 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:46:34] 2025-07-27 22:46:05,627 | INFO     | [job] validate thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:05,761 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:05,805 | INFO     | [payload] control thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:05,824 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:06,051 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:06,083 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:06,159 | INFO     | [job] control thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:06,235 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:06,746 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:46:34] 2025-07-27 22:46:07,751 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:09,579 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:46:34] 2025-07-27 22:46:10,920 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140376008353600)>', '<ExcThread(monitor, started 140375654110976)>']
[2025-07-27 18:46:34] 2025-07-27 22:46:15,945 | INFO     | all workflow threads have been joined
[2025-07-27 18:46:34] 2025-07-27 22:46:15,945 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:46:34] 2025-07-27 22:46:15,946 | INFO     | traces error code: 0
[2025-07-27 18:46:34] 2025-07-27 22:46:15,946 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:46:34] 2025-07-27 22:46:34,278 | INFO     | PID=729512 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 18:46:34] 2025-07-27 22:46:34,279 | INFO     | .. there are 9 such processes running
[2025-07-27 18:46:34] 2025-07-27 22:46:34,281 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:46:34] 2025-07-27 22:46:34,281 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:46:34] 2025-07-27 22:46:34,281 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:46:34] 2025-07-27 22:46:34,281 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:46:34] 2025-07-27 22:46:34,281 | INFO     | [monitor] control thread has ended
[2025-07-27 18:46:34] 2025-07-27 22:46:34,516 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:46:34] 2025-07-27 22:46:34,521 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:46:34] 2025-07-27 22:46:34,524 [wrapper] pilotpid: 729512
[2025-07-27 18:46:34] 2025-07-27 22:46:34,528 [wrapper] Pilot exit status: 0
[2025-07-27 18:46:34] 2025-07-27 22:46:34,541 [wrapper] pandaids: 6747437700
[2025-07-27 18:46:34] 2025-07-27 22:46:34,609 [wrapper] cleanup supervisor_pilot 1073157 729513
[2025-07-27 18:46:34] 2025-07-27 22:46:34,613 [wrapper] Test setup, not cleaning
[2025-07-27 18:46:34] 2025-07-27 22:46:34,617 [wrapper] apfmon messages muted
[2025-07-27 18:46:34] 2025-07-27 22:46:34,620 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:46:34] 2025-07-27 22:46:34,624 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:46:34]  *** Error codes and diagnostics ***
[2025-07-27 18:46:34]     "exeErrorCode": 0,
[2025-07-27 18:46:34]     "exeErrorDiag": "",
[2025-07-27 18:46:34]     "pilotErrorCode": 0,
[2025-07-27 18:46:34]     "pilotErrorDiag": "",
[2025-07-27 18:46:34]  *** Listing of results directory ***
[2025-07-27 18:46:34] total 440784
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:52 queuedata.json
[2025-07-27 18:46:34] -rwx------. 1 boincer umatlas     36292 Jul 27 10:53 runpilot2-wrapper.sh
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:46:34] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:28 run_atlas
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:28 job.xml
[2025-07-27 18:46:34] -rw-r--r--. 2 boincer umatlas 229454013 Jul 27 17:28 EVNT.45743347._001413.pool.root.1
[2025-07-27 18:46:34] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 17:28 input.tar.gz
[2025-07-27 18:46:34] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:28 start_atlas.sh
[2025-07-27 18:46:34] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:28 shared
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:28 boinc_lockfile
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 17:28 pandaJob.out
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas    980117 Jul 27 17:28 agis_schedconf.cvmfs.json
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:28 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:46:34] drwx------. 4 boincer umatlas      4096 Jul 27 17:28 pilot3
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas 216369313 Jul 27 18:45 HITS.45743349._050339.pool.root.1
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas       530 Jul 27 18:45 boinc_task_state.xml
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 18:45 init_data.xml
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas      1037 Jul 27 18:45 memory_monitor_summary.json
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas    369721 Jul 27 18:45 log.45743349._050339.job.log.tgz.1
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas      7826 Jul 27 18:46 heartbeat.json
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:46 boinc_mmap_file
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas        27 Jul 27 18:46 wrapper_checkpoint.txt
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas        95 Jul 27 18:46 pilot_heartbeat.json
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas       821 Jul 27 18:46 pilotlog.txt
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas    460829 Jul 27 18:46 log.45743349._050339.job.log.1
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas       357 Jul 27 18:46 output.list
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:46 runtime_log
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas    849920 Jul 27 18:46 result.tar.gz
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 18:46 runtime_log.err
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas       655 Jul 27 18:46 oJ0NDmZvH07n9Rq4apOajLDm4fhM0noT9bVof3QYDmyh2KDms0NV5n.diag
[2025-07-27 18:46:34] -rw-r--r--. 1 boincer umatlas     21654 Jul 27 18:46 stderr.txt
[2025-07-27 18:46:34] HITS file was successfully produced:
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas 216369313 Jul 27 18:45 shared/HITS.pool.root.1
[2025-07-27 18:46:34]  *** Contents of shared directory: ***
[2025-07-27 18:46:34] total 436764
[2025-07-27 18:46:34] -rw-r--r--. 2 boincer umatlas 229454013 Jul 27 17:28 ATLAS.root_0
[2025-07-27 18:46:34] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 17:28 input.tar.gz
[2025-07-27 18:46:34] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:28 start_atlas.sh
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas 216369313 Jul 27 18:45 HITS.pool.root.1
[2025-07-27 18:46:34] -rw-------. 1 boincer umatlas    849920 Jul 27 18:46 result.tar.gz
18:46:35 (725752): run_atlas exited; CPU time 50503.885996
18:46:35 (725752): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN