Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:04:52 (3372824): wrapper (7.7.26015): starting
16:04:52 (3372824): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 16:04:52] Arguments: --nthreads 8
[2025-07-27 16:04:52] Threads: 8
[2025-07-27 16:04:52] Checking for CVMFS
[2025-07-27 16:04:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:04:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:04:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:04:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:04:53] 2.12.6.0 3144059 18820 349032 148822 2 333 29979316 40960001 9863 16776704 0 61274067 99.757 77241857 28450 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 16:04:53] CVMFS is ok
[2025-07-27 16:04:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:04:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:04:53] Further information can be found at the LHC@home message board.
[2025-07-27 16:04:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:04:53] Checking for apptainer binary...
[2025-07-27 16:04:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:04:53] Running /usr/bin/apptainer --version
[2025-07-27 16:04:53] apptainer version 1.4.1-1.el9
[2025-07-27 16:04:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:04:53] c7-11-15.aglt2.org
[2025-07-27 16:04:53] apptainer works
[2025-07-27 16:04:53] Set ATHENA_PROC_NUMBER=8
[2025-07-27 16:04:53] Set ATHENA_CORE_NUMBER=8
[2025-07-27 16:04:53] Starting ATLAS job with PandaID=6747499990
[2025-07-27 16:04:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:32:40]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:32:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:32:40]  replicas=None
[2025-07-27 17:32:40]  scope=mc23_13p6TeV
[2025-07-27 17:32:40]  status=None
[2025-07-27 17:32:40]  status_code=0
[2025-07-27 17:32:40]  storage_token=
[2025-07-27 17:32:40]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747499990/log.45743349._051375.job.log.tgz.1
[2025-07-27 17:32:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/e1/log.45743349._051375.job.log.tgz.1
[2025-07-27 17:32:40]  workdir=None
[2025-07-27 17:32:40] ]
[2025-07-27 17:32:40] 2025-07-27 21:31:57,322 | INFO     | transferring file log.45743349._051375.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747499990/log.45743349._051375.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:32:40] 2025-07-27 21:31:57,322 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747499990/log.45743349._051375.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._051375.job
[2025-07-27 17:32:40] 2025-07-27 21:31:57,349 | INFO     | adding to output.list: log.45743349._051375.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/e1/log.45743349._051375.job.log.tg
[2025-07-27 17:32:40] 2025-07-27 21:31:57,349 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:32:40] 2025-07-27 21:31:57,350 | INFO     | summary of transferred files:
[2025-07-27 17:32:40] 2025-07-27 21:31:57,350 | INFO     |  -- lfn=log.45743349._051375.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:32:40] 2025-07-27 21:31:57,350 | INFO     | stage-out finished correctly
[2025-07-27 17:32:40] 2025-07-27 21:31:58,634 | INFO     | 5215s have passed since pilot start - server update state is 'RUNNING'
[2025-07-27 17:32:40] 2025-07-27 21:32:00,084 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:32:40] 2025-07-27 21:32:00,821 | WARNING  | process 3385807 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 17:32:40] 2025-07-27 21:32:00,822 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747499990/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:32:40] 2025-07-27 21:32:01,103 | INFO     | number of running child processes to parent process 3385807: 1
[2025-07-27 17:32:40] 2025-07-27 21:32:01,103 | INFO     | maximum number of monitored processes: 6
[2025-07-27 17:32:40] 2025-07-27 21:32:02,062 | INFO     | job 6747499990 has state=finished
[2025-07-27 17:32:40] 2025-07-27 21:32:02,063 | INFO     | preparing for final server update for job 6747499990 in state='finished'
[2025-07-27 17:32:40] 2025-07-27 21:32:02,063 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:32:40] 2025-07-27 21:32:02,063 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:32:40] 2025-07-27 21:32:02,063 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:32:40] 2025-07-27 21:32:02,063 | INFO     | job 6747499990 has finished - writing final server update
[2025-07-27 17:32:40] 2025-07-27 21:32:02,064 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:32:40] 2025-07-27 21:32:02,064 | INFO     | executing command: lscpu
[2025-07-27 17:32:40] 2025-07-27 21:32:02,163 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:32:40] 2025-07-27 21:32:03,619 | INFO     | monitor loop #376: job 0:6747499990 is in state 'finished'
[2025-07-27 17:32:40] 2025-07-27 21:32:03,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:40] 2025-07-27 21:32:06,123 | INFO     | monitor loop #377: job 0:6747499990 is in state 'finished'
[2025-07-27 17:32:40] 2025-07-27 21:32:06,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:40] 2025-07-27 21:32:08,081 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 17:32:40] 2025-07-27 21:32:08,120 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3264.9763281250007
[2025-07-27 17:32:40] 2025-07-27 21:32:08,131 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747499990/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:32:40] 2025-07-27 21:32:08,132 | INFO     | extracted standard info from prmon json
[2025-07-27 17:32:40] 2025-07-27 21:32:08,132 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:32:40] 2025-07-27 21:32:08,132 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:32:40] 2025-07-27 21:32:08,132 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:32:40] 2025-07-27 21:32:08,132 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:32:40] 2025-07-27 21:32:08,134 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:32:40] 2025-07-27 21:32:08,134 | INFO     | sum of square deviations: 147126479.5
[2025-07-27 17:32:40] 2025-07-27 21:32:08,134 | INFO     | sum of deviations: -2413492297.5
[2025-07-27 17:32:40] 2025-07-27 21:32:08,134 | INFO     | mean x: 1753649392.5
[2025-07-27 17:32:40] 2025-07-27 21:32:08,134 | INFO     | mean y: 2220300.9615384615
[2025-07-27 17:32:40] 2025-07-27 21:32:08,134 | INFO     | -- intersect: 28769436886.975918
[2025-07-27 17:32:40] 2025-07-27 21:32:08,135 | INFO     | intersect: 28769436886.975918
[2025-07-27 17:32:40] 2025-07-27 21:32:08,135 | INFO     | chi2: 0.11605045791207115
[2025-07-27 17:32:40] 2025-07-27 21:32:08,135 | INFO     | -- intersect: 28769436886.975918
[2025-07-27 17:32:40] 2025-07-27 21:32:08,135 | INFO     | current memory leak: -16.40 B/s (using 78 data points, chi2=0.12)
[2025-07-27 17:32:40] 2025-07-27 21:32:08,135 | INFO     | could have reported an average CPU frequency of 3269 MHz (6 samples)
[2025-07-27 17:32:40] 2025-07-27 21:32:08,135 | INFO     | ..............................
[2025-07-27 17:32:40] 2025-07-27 21:32:08,135 | INFO     | . Timing measurements:
[2025-07-27 17:32:40] 2025-07-27 21:32:08,136 | INFO     | . get job = 0 s
[2025-07-27 17:32:40] 2025-07-27 21:32:08,136 | INFO     | . initial setup = 3 s
[2025-07-27 17:32:40] 2025-07-27 21:32:08,136 | INFO     | . payload setup = 8 s
[2025-07-27 17:32:40] 2025-07-27 21:32:08,136 | INFO     | . stage-in = 0 s
[2025-07-27 17:32:40] 2025-07-27 21:32:08,136 | INFO     | . payload execution = 5180 s
[2025-07-27 17:32:40] 2025-07-27 21:32:08,136 | INFO     | . stage-out = 0 s
[2025-07-27 17:32:40] 2025-07-27 21:32:08,136 | INFO     | . log creation = 0 s
[2025-07-27 17:32:40] 2025-07-27 21:32:08,136 | INFO     | ..............................
[2025-07-27 17:32:40] 2025-07-27 21:32:08,218 | INFO     | 
[2025-07-27 17:32:40] 2025-07-27 21:32:08,218 | INFO     | job summary report
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | --------------------------------------------------
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | PanDA job id: 6747499990
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | task id: 45743349
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | errors: (none)
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | pilot state: finished 
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | transexitcode: 0
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | exeerrorcode: 0
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | exeerrordiag: 
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | exitcode: 0
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | exitmsg: OK
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | cpuconsumptiontime: 34667 s
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | nevents: 400
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | neventsw: 0
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | pid: 3385807
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | pgrp: 3385807
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | corecount: 8
[2025-07-27 17:32:40] 2025-07-27 21:32:08,219 | INFO     | event service: False
[2025-07-27 17:32:40] 2025-07-27 21:32:08,220 | INFO     | sizes: {0: 2397424, 7: 2397686, 11: 2397714, 5193: 2424046, 5194: 2433044, 5197: 2433100, 5205: 2433422}
[2025-07-27 17:32:40] 2025-07-27 21:32:08,220 | INFO     | --------------------------------------------------
[2025-07-27 17:32:40] 2025-07-27 21:32:08,220 | INFO     | 
[2025-07-27 17:32:40] 2025-07-27 21:32:08,220 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 17:32:40] 2025-07-27 21:32:08,269 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,269 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,269 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,269 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,269 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:32:40] 2025-07-27 21:32:08,270 | INFO     | job 6747499990 has completed (purged errors)
[2025-07-27 17:32:40] 2025-07-27 21:32:08,271 | INFO     | overall cleanup function is called
[2025-07-27 17:32:40] 2025-07-27 21:32:09,279 | INFO     | --- collectZombieJob: --- 10, [3385807]
[2025-07-27 17:32:40] 2025-07-27 21:32:09,279 | INFO     | zombie collector waiting for pid 3385807
[2025-07-27 17:32:40] 2025-07-27 21:32:09,280 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:32:40] 2025-07-27 21:32:09,280 | INFO     | collected zombie processes
[2025-07-27 17:32:40] 2025-07-27 21:32:09,280 | INFO     | will attempt to kill all subprocesses of pid=3385807
[2025-07-27 17:32:40] 2025-07-27 21:32:09,553 | INFO     | process IDs to be killed: [3385807] (in reverse order)
[2025-07-27 17:32:40] 2025-07-27 21:32:09,680 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:32:40] 2025-07-27 21:32:09,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:32:40] 2025-07-27 21:32:09,694 | INFO     | did not find any defunct processes belonging to 3385807
[2025-07-27 17:32:40] 2025-07-27 21:32:09,709 | INFO     | did not find any defunct processes belonging to 3385807
[2025-07-27 17:32:40] 2025-07-27 21:32:09,709 | INFO     | ready for new job
[2025-07-27 17:32:40] 2025-07-27 21:32:09,709 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:32:40] 2025-07-27 21:32:09,711 | INFO     | ***************************************
[2025-07-27 17:32:40] 2025-07-27 21:32:09,711 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:32:40] 2025-07-27 21:32:09,711 | INFO     | ***************************************
[2025-07-27 17:32:40] 2025-07-27 21:32:09,711 | INFO     | 
[2025-07-27 17:32:40] 2025-07-27 21:32:09,728 | INFO     | architecture information:
[2025-07-27 17:32:40] 2025-07-27 21:32:09,729 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:32:40] 2025-07-27 21:32:09,751 | INFO     | cat /etc/os-release:
[2025-07-27 17:32:40] NAME="CentOS Linux"
[2025-07-27 17:32:40] VERSION="7 (Core)"
[2025-07-27 17:32:40] ID="centos"
[2025-07-27 17:32:40] ID_LIKE="rhel fedora"
[2025-07-27 17:32:40] VERSION_ID="7"
[2025-07-27 17:32:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:32:40] ANSI_COLOR="0;31"
[2025-07-27 17:32:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:32:40] HOME_URL="https://www.centos.org/"
[2025-07-27 17:32:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:32:40] 
[2025-07-27 17:32:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:32:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:32:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:32:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:32:40] 
[2025-07-27 17:32:40] 2025-07-27 21:32:09,752 | INFO     | ***************************************
[2025-07-27 17:32:40] 2025-07-27 21:32:10,254 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 17:32:40] 2025-07-27 21:32:10,276 | INFO     | sufficient remaining disk space (86062923776 B)
[2025-07-27 17:32:40] 2025-07-27 21:32:10,277 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:32:40] 2025-07-27 21:32:10,277 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:32:40] 2025-07-27 21:32:10,277 | INFO     | update_server=False
[2025-07-27 17:32:40] 2025-07-27 21:32:10,277 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:32:40] 2025-07-27 21:32:10,278 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:32:40] 2025-07-27 21:32:10,278 | INFO     | aborting loop
[2025-07-27 17:32:40] 2025-07-27 21:32:10,344 | INFO     | all data control threads have been joined
[2025-07-27 17:32:40] 2025-07-27 21:32:10,541 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:32:40] 2025-07-27 21:32:10,684 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:32:40] 2025-07-27 21:32:10,747 | INFO     | all payload control threads have been joined
[2025-07-27 17:32:40] 2025-07-27 21:32:11,283 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:11,285 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:11,349 | INFO     | [data] control thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:11,417 | INFO     | all job control threads have been joined
[2025-07-27 17:32:40] 2025-07-27 21:32:11,752 | INFO     | [payload] control thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:11,902 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:11,965 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:11,981 | INFO     | [job] validate thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:12,045 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:12,103 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:12,422 | INFO     | [job] control thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:12,548 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:12,604 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:12,605 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:13,233 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:32:40] 2025-07-27 21:32:14,239 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:14,690 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:21,201 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:32:40] 2025-07-27 21:32:22,207 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:32:40] 2025-07-27 21:32:23,417 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140644268824384)>', '<ExcThread(monitor, started 140643779200768)>']
[2025-07-27 17:32:40] 2025-07-27 21:32:28,444 | INFO     | all workflow threads have been joined
[2025-07-27 17:32:40] 2025-07-27 21:32:28,444 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:32:40] 2025-07-27 21:32:28,444 | INFO     | traces error code: 0
[2025-07-27 17:32:40] 2025-07-27 21:32:28,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:32:40] 2025-07-27 21:32:40,079 | INFO     | PID=3376447 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:32:40] 2025-07-27 21:32:40,079 | INFO     | .. there are 12 such processes running
[2025-07-27 17:32:40] 2025-07-27 21:32:40,080 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:32:40] 2025-07-27 21:32:40,080 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:32:40] 2025-07-27 21:32:40,080 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:32:40] 2025-07-27 21:32:40,080 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:32:40] 2025-07-27 21:32:40,080 | INFO     | [monitor] control thread has ended
[2025-07-27 17:32:40] 2025-07-27 21:32:40,229 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:32:40] 2025-07-27 21:32:40,232 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:32:40] 2025-07-27 21:32:40,235 [wrapper] pilotpid: 3376447
[2025-07-27 17:32:40] 2025-07-27 21:32:40,239 [wrapper] Pilot exit status: 0
[2025-07-27 17:32:40] 2025-07-27 21:32:40,258 [wrapper] pandaids: 6747499990
[2025-07-27 17:32:40] 2025-07-27 21:32:40,348 [wrapper] cleanup supervisor_pilot 3706037 3376448
[2025-07-27 17:32:40] 2025-07-27 21:32:40,355 [wrapper] Test setup, not cleaning
[2025-07-27 17:32:40] 2025-07-27 21:32:40,361 [wrapper] apfmon messages muted
[2025-07-27 17:32:40] 2025-07-27 21:32:40,366 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:32:40] 2025-07-27 21:32:40,375 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:32:40]  *** Error codes and diagnostics ***
[2025-07-27 17:32:40]     "exeErrorCode": 0,
[2025-07-27 17:32:40]     "exeErrorDiag": "",
[2025-07-27 17:32:40]     "pilotErrorCode": 0,
[2025-07-27 17:32:40]     "pilotErrorDiag": "",
[2025-07-27 17:32:40]  *** Listing of results directory ***
[2025-07-27 17:32:40] total 346916
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 17:32:40] -rwx------. 1 boincer umatlas     36292 Jul 27 11:14 runpilot2-wrapper.sh
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:14 queuedata.json
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:32:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:04 run_atlas
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:04 job.xml
[2025-07-27 17:32:40] -rw-r--r--. 2 boincer umatlas 145249715 Jul 27 16:04 EVNT.45743347._002751.pool.root.1
[2025-07-27 17:32:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:04 start_atlas.sh
[2025-07-27 17:32:40] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:04 shared
[2025-07-27 17:32:40] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 16:04 input.tar.gz
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:04 boinc_lockfile
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 16:04 pandaJob.out
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas    980125 Jul 27 16:05 agis_schedconf.cvmfs.json
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:05 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:32:40] drwx------. 4 boincer umatlas      4096 Jul 27 16:05 pilot3
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas      6896 Jul 27 17:30 init_data.xml
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas 204499648 Jul 27 17:31 HITS.45743349._051375.pool.root.1
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas       530 Jul 27 17:31 boinc_task_state.xml
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas        95 Jul 27 17:31 pilot_heartbeat.json
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas      1027 Jul 27 17:31 memory_monitor_summary.json
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas    304113 Jul 27 17:31 log.45743349._051375.job.log.tgz.1
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas      7765 Jul 27 17:32 heartbeat.json
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:32 wrapper_checkpoint.txt
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:32 boinc_mmap_file
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas       823 Jul 27 17:32 pilotlog.txt
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas    503310 Jul 27 17:32 log.45743349._051375.job.log.1
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas       357 Jul 27 17:32 output.list
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:32 runtime_log
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas    829440 Jul 27 17:32 result.tar.gz
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 17:32 runtime_log.err
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas       652 Jul 27 17:32 iIDMDmWGI07n9Rq4apOajLDm4fhM0noT9bVof3QYDmtj2KDmyyOCRm.diag
[2025-07-27 17:32:40] -rw-r--r--. 1 boincer umatlas     21917 Jul 27 17:32 stderr.txt
[2025-07-27 17:32:40] HITS file was successfully produced:
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas 204499648 Jul 27 17:31 shared/HITS.pool.root.1
[2025-07-27 17:32:40]  *** Contents of shared directory: ***
[2025-07-27 17:32:40] total 342920
[2025-07-27 17:32:40] -rw-r--r--. 2 boincer umatlas 145249715 Jul 27 16:04 ATLAS.root_0
[2025-07-27 17:32:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:04 start_atlas.sh
[2025-07-27 17:32:40] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 16:04 input.tar.gz
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas 204499648 Jul 27 17:31 HITS.pool.root.1
[2025-07-27 17:32:40] -rw-------. 1 boincer umatlas    829440 Jul 27 17:32 result.tar.gz
17:32:42 (3372824): run_atlas exited; CPU time 34751.501218
17:32:42 (3372824): called boinc_finish(0)

</stderr_txt>
]]>

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