Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:14:43 (4047071): wrapper (7.7.26015): starting
16:14:43 (4047071): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 16:14:43] Arguments: --nthreads 8
[2025-07-27 16:14:43] Threads: 8
[2025-07-27 16:14:43] Checking for CVMFS
[2025-07-27 16:14:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:14:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:14:44] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:14:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:14:45] 2.12.6.0 870721 18847 448060 148822 0 602 26433635 32935936 24295 16776704 1 118268182 99.647 118249442 19598 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 16:14:45] CVMFS is ok
[2025-07-27 16:14:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:14:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:14:45] Further information can be found at the LHC@home message board.
[2025-07-27 16:14:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:14:45] Checking for apptainer binary...
[2025-07-27 16:14:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:14:45] Running /usr/bin/apptainer --version
[2025-07-27 16:14:45] apptainer version 1.4.1-1.el9
[2025-07-27 16:14:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:14:45] lc-10-11.aglt2.org
[2025-07-27 16:14:45] apptainer works
[2025-07-27 16:14:45] Set ATHENA_PROC_NUMBER=8
[2025-07-27 16:14:45] Set ATHENA_CORE_NUMBER=8
[2025-07-27 16:14:45] Starting ATLAS job with PandaID=6747413876
[2025-07-27 16:14:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:54:38]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:54:38] 2025-07-27 22:54:03,217 | INFO     | monitor loop #618: job 0:6747413876 is in state 'finished'
[2025-07-27 18:54:38] 2025-07-27 22:54:03,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:54:38] 2025-07-27 22:54:03,473 | INFO     | PID=4051745 has CPU usage=17.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 18:54:38] 2025-07-27 22:54:03,473 | INFO     | .. there are 30 such processes running
[2025-07-27 18:54:38] 2025-07-27 22:54:04,331 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 18:54:38] 2025-07-27 22:54:04,341 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2355.447395833334
[2025-07-27 18:54:38] 2025-07-27 22:54:04,364 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747413876/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:54:38] 2025-07-27 22:54:04,365 | INFO     | extracted standard info from prmon json
[2025-07-27 18:54:38] 2025-07-27 22:54:04,365 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:54:38] 2025-07-27 22:54:04,365 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:54:38] 2025-07-27 22:54:04,366 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:54:38] 2025-07-27 22:54:04,366 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:54:38] 2025-07-27 22:54:04,370 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:54:38] 2025-07-27 22:54:04,370 | INFO     | sum of square deviations: 1154698287.5870936
[2025-07-27 18:54:38] 2025-07-27 22:54:04,371 | INFO     | sum of deviations: -13691616663.316128
[2025-07-27 18:54:38] 2025-07-27 22:54:04,371 | INFO     | mean x: 1753652105.0516129
[2025-07-27 18:54:38] 2025-07-27 22:54:04,371 | INFO     | mean y: 2195377.664516129
[2025-07-27 18:54:38] 2025-07-27 22:54:04,371 | INFO     | -- intersect: 20795793706.589966
[2025-07-27 18:54:38] 2025-07-27 22:54:04,372 | INFO     | intersect: 20795793706.589966
[2025-07-27 18:54:38] 2025-07-27 22:54:04,372 | INFO     | chi2: 3.0440896747216
[2025-07-27 18:54:38] 2025-07-27 22:54:04,372 | INFO     | sum of square deviations: 1046521955.0733353
[2025-07-27 18:54:38] 2025-07-27 22:54:04,373 | INFO     | sum of deviations: -3524372737.9200025
[2025-07-27 18:54:38] 2025-07-27 22:54:04,374 | INFO     | mean x: 1753651952.5533333
[2025-07-27 18:54:38] 2025-07-27 22:54:04,374 | INFO     | mean y: 2209408.24
[2025-07-27 18:54:38] 2025-07-27 22:54:04,374 | INFO     | -- intersect: 5907984345.3229475
[2025-07-27 18:54:38] 2025-07-27 22:54:04,374 | INFO     | intersect: 5907984345.3229475
[2025-07-27 18:54:38] 2025-07-27 22:54:04,374 | INFO     | chi2: 2.3949359136957673
[2025-07-27 18:54:38] 2025-07-27 22:54:04,374 | INFO     | current chi2=2.3949359136957673 (change=21.325053805624226 %)
[2025-07-27 18:54:38] 2025-07-27 22:54:04,374 | INFO     | right removable region: 149
[2025-07-27 18:54:38] 2025-07-27 22:54:04,375 | INFO     | sum of square deviations: 1046517075.0733353
[2025-07-27 18:54:38] 2025-07-27 22:54:04,375 | INFO     | sum of deviations: -40121112060.22
[2025-07-27 18:54:38] 2025-07-27 22:54:04,376 | INFO     | mean x: 1753652257.5533333
[2025-07-27 18:54:38] 2025-07-27 22:54:04,376 | INFO     | mean y: 2232304.34
[2025-07-27 18:54:38] 2025-07-27 22:54:04,376 | INFO     | -- intersect: 67233317602.231255
[2025-07-27 18:54:38] 2025-07-27 22:54:04,376 | INFO     | intersect: 67233317602.231255
[2025-07-27 18:54:38] 2025-07-27 22:54:04,376 | INFO     | chi2: 1.1620919282722308
[2025-07-27 18:54:38] 2025-07-27 22:54:04,376 | INFO     | current chi2=1.1620919282722308 (change=61.82464866517078 %)
[2025-07-27 18:54:38] 2025-07-27 22:54:04,377 | INFO     | sum of square deviations: 945312737.5586221
[2025-07-27 18:54:38] 2025-07-27 22:54:04,377 | INFO     | sum of deviations: -44930508139.220665
[2025-07-27 18:54:38] 2025-07-27 22:54:04,377 | INFO     | mean x: 1753652410.0551724
[2025-07-27 18:54:38] 2025-07-27 22:54:04,378 | INFO     | mean y: 2239557.027586207
[2025-07-27 18:54:38] 2025-07-27 22:54:04,378 | INFO     | -- intersect: 83352955941.99713
[2025-07-27 18:54:38] 2025-07-27 22:54:04,378 | INFO     | intersect: 83352955941.99713
[2025-07-27 18:54:38] 2025-07-27 22:54:04,378 | INFO     | chi2: 1.0259545690400593
[2025-07-27 18:54:38] 2025-07-27 22:54:04,378 | INFO     | current chi2=1.0259545690400593 (change=11.7148528373807 %)
[2025-07-27 18:54:38] 2025-07-27 22:54:04,378 | INFO     | left removable region: 20
[2025-07-27 18:54:38] 2025-07-27 22:54:04,379 | INFO     | sum of square deviations: 665640425.5038763
[2025-07-27 18:54:38] 2025-07-27 22:54:04,380 | INFO     | sum of deviations: -29081429434.86823
[2025-07-27 18:54:38] 2025-07-27 22:54:04,380 | INFO     | mean x: 1753652532.0620155
[2025-07-27 18:54:38] 2025-07-27 22:54:04,380 | INFO     | mean y: 2246897.108527132
[2025-07-27 18:54:38] 2025-07-27 22:54:04,380 | INFO     | -- intersect: 76618270219.0612
[2025-07-27 18:54:38] 2025-07-27 22:54:04,380 | INFO     | intersect: 76618270219.0612
[2025-07-27 18:54:38] 2025-07-27 22:54:04,380 | INFO     | chi2: 0.25928236531236526
[2025-07-27 18:54:38] 2025-07-27 22:54:04,381 | INFO     | -- intersect: 76618270219.0612
[2025-07-27 18:54:38] 2025-07-27 22:54:04,381 | INFO     | current memory leak: -43.69 B/s (using 129 data points, chi2=0.26)
[2025-07-27 18:54:38] 2025-07-27 22:54:04,381 | INFO     | could have reported an average CPU frequency of 2409 MHz (9 samples)
[2025-07-27 18:54:38] 2025-07-27 22:54:04,381 | INFO     | ..............................
[2025-07-27 18:54:38] 2025-07-27 22:54:04,382 | INFO     | . Timing measurements:
[2025-07-27 18:54:38] 2025-07-27 22:54:04,382 | INFO     | . get job = 0 s
[2025-07-27 18:54:38] 2025-07-27 22:54:04,382 | INFO     | . initial setup = 4 s
[2025-07-27 18:54:38] 2025-07-27 22:54:04,382 | INFO     | . payload setup = 28 s
[2025-07-27 18:54:38] 2025-07-27 22:54:04,382 | INFO     | . stage-in = 0 s
[2025-07-27 18:54:38] 2025-07-27 22:54:04,382 | INFO     | . payload execution = 9441 s
[2025-07-27 18:54:38] 2025-07-27 22:54:04,382 | INFO     | . stage-out = 1 s
[2025-07-27 18:54:38] 2025-07-27 22:54:04,382 | INFO     | . log creation = 0 s
[2025-07-27 18:54:38] 2025-07-27 22:54:04,382 | INFO     | ..............................
[2025-07-27 18:54:38] 2025-07-27 22:54:04,908 | INFO     | 
[2025-07-27 18:54:38] 2025-07-27 22:54:04,909 | INFO     | job summary report
[2025-07-27 18:54:38] 2025-07-27 22:54:04,909 | INFO     | --------------------------------------------------
[2025-07-27 18:54:38] 2025-07-27 22:54:04,909 | INFO     | PanDA job id: 6747413876
[2025-07-27 18:54:38] 2025-07-27 22:54:04,909 | INFO     | task id: 45743349
[2025-07-27 18:54:38] 2025-07-27 22:54:04,909 | INFO     | errors: (none)
[2025-07-27 18:54:38] 2025-07-27 22:54:04,909 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:54:38] 2025-07-27 22:54:04,909 | INFO     | pilot state: finished 
[2025-07-27 18:54:38] 2025-07-27 22:54:04,909 | INFO     | transexitcode: 0
[2025-07-27 18:54:38] 2025-07-27 22:54:04,909 | INFO     | exeerrorcode: 0
[2025-07-27 18:54:38] 2025-07-27 22:54:04,909 | INFO     | exeerrordiag: 
[2025-07-27 18:54:38] 2025-07-27 22:54:04,909 | INFO     | exitcode: 0
[2025-07-27 18:54:38] 2025-07-27 22:54:04,910 | INFO     | exitmsg: OK
[2025-07-27 18:54:38] 2025-07-27 22:54:04,910 | INFO     | cpuconsumptiontime: 56315 s
[2025-07-27 18:54:38] 2025-07-27 22:54:04,910 | INFO     | nevents: 400
[2025-07-27 18:54:38] 2025-07-27 22:54:04,910 | INFO     | neventsw: 0
[2025-07-27 18:54:38] 2025-07-27 22:54:04,910 | INFO     | pid: 4061037
[2025-07-27 18:54:38] 2025-07-27 22:54:04,910 | INFO     | pgrp: 4061037
[2025-07-27 18:54:38] 2025-07-27 22:54:04,910 | INFO     | corecount: 8
[2025-07-27 18:54:38] 2025-07-27 22:54:04,910 | INFO     | event service: False
[2025-07-27 18:54:38] 2025-07-27 22:54:04,910 | INFO     | sizes: {0: 2397248, 1: 2397503, 2: 2397503, 13: 2397531, 21: 2397849, 24: 2397877, 9472: 2426467, 9473: 2426466, 9474: 2435520, 9475: 2435576, 9484: 2435834}
[2025-07-27 18:54:38] 2025-07-27 22:54:04,910 | INFO     | --------------------------------------------------
[2025-07-27 18:54:38] 2025-07-27 22:54:04,910 | INFO     | 
[2025-07-27 18:54:38] 2025-07-27 22:54:04,911 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 18:54:38] 2025-07-27 22:54:04,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,938 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,938 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,938 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,938 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,938 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,938 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,939 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:54:38] 2025-07-27 22:54:04,940 | INFO     | job 6747413876 has completed (purged errors)
[2025-07-27 18:54:38] 2025-07-27 22:54:04,940 | INFO     | overall cleanup function is called
[2025-07-27 18:54:38] 2025-07-27 22:54:05,950 | INFO     | --- collectZombieJob: --- 10, [4061037]
[2025-07-27 18:54:38] 2025-07-27 22:54:05,950 | INFO     | zombie collector waiting for pid 4061037
[2025-07-27 18:54:38] 2025-07-27 22:54:05,950 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:54:38] 2025-07-27 22:54:05,950 | INFO     | collected zombie processes
[2025-07-27 18:54:38] 2025-07-27 22:54:05,950 | INFO     | will attempt to kill all subprocesses of pid=4061037
[2025-07-27 18:54:38] 2025-07-27 22:54:06,565 | INFO     | process IDs to be killed: [4061037] (in reverse order)
[2025-07-27 18:54:38] 2025-07-27 22:54:06,745 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:54:38] 2025-07-27 22:54:06,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:54:38] 2025-07-27 22:54:06,776 | INFO     | did not find any defunct processes belonging to 4061037
[2025-07-27 18:54:38] 2025-07-27 22:54:06,811 | INFO     | did not find any defunct processes belonging to 4061037
[2025-07-27 18:54:38] 2025-07-27 22:54:06,815 | INFO     | ready for new job
[2025-07-27 18:54:38] 2025-07-27 22:54:06,815 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:54:38] 2025-07-27 22:54:06,820 | INFO     | ***************************************
[2025-07-27 18:54:38] 2025-07-27 22:54:06,824 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:54:38] 2025-07-27 22:54:06,824 | INFO     | ***************************************
[2025-07-27 18:54:38] 2025-07-27 22:54:06,824 | INFO     | 
[2025-07-27 18:54:38] 2025-07-27 22:54:06,847 | INFO     | architecture information:
[2025-07-27 18:54:38] 2025-07-27 22:54:06,848 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:54:38] 2025-07-27 22:54:06,871 | INFO     | cat /etc/os-release:
[2025-07-27 18:54:38] NAME="CentOS Linux"
[2025-07-27 18:54:38] VERSION="7 (Core)"
[2025-07-27 18:54:38] ID="centos"
[2025-07-27 18:54:38] ID_LIKE="rhel fedora"
[2025-07-27 18:54:38] VERSION_ID="7"
[2025-07-27 18:54:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:54:38] ANSI_COLOR="0;31"
[2025-07-27 18:54:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:54:38] HOME_URL="https://www.centos.org/"
[2025-07-27 18:54:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:54:38] 
[2025-07-27 18:54:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:54:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:54:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:54:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:54:38] 
[2025-07-27 18:54:38] 2025-07-27 22:54:06,872 | INFO     | ***************************************
[2025-07-27 18:54:38] 2025-07-27 22:54:07,374 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 18:54:38] 2025-07-27 22:54:07,399 | INFO     | sufficient remaining disk space (95552536576 B)
[2025-07-27 18:54:38] 2025-07-27 22:54:07,399 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:54:38] 2025-07-27 22:54:07,400 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:54:38] 2025-07-27 22:54:07,400 | INFO     | update_server=False
[2025-07-27 18:54:38] 2025-07-27 22:54:07,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:54:38] 2025-07-27 22:54:07,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:54:38] 2025-07-27 22:54:07,401 | INFO     | aborting loop
[2025-07-27 18:54:38] 2025-07-27 22:54:07,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:54:38] 2025-07-27 22:54:07,989 | INFO     | all payload control threads have been joined
[2025-07-27 18:54:38] 2025-07-27 22:54:08,299 | INFO     | all data control threads have been joined
[2025-07-27 18:54:38] 2025-07-27 22:54:08,406 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:08,407 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:08,621 | INFO     | all job control threads have been joined
[2025-07-27 18:54:38] 2025-07-27 22:54:08,628 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:08,691 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:08,994 | INFO     | [payload] control thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:09,305 | INFO     | [data] control thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:09,428 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:09,514 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:54:38] 2025-07-27 22:54:09,543 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:09,627 | INFO     | [job] control thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:09,702 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:09,793 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:09,895 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:09,906 | INFO     | [job] validate thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:09,996 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:10,218 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:54:38] 2025-07-27 22:54:10,520 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:14,226 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:54:38] 2025-07-27 22:54:16,323 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140159012276032)>', '<ExcThread(monitor, started 140158523397888)>']
[2025-07-27 18:54:38] 2025-07-27 22:54:21,348 | INFO     | all workflow threads have been joined
[2025-07-27 18:54:38] 2025-07-27 22:54:21,351 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:54:38] 2025-07-27 22:54:21,352 | INFO     | traces error code: 0
[2025-07-27 18:54:38] 2025-07-27 22:54:21,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:54:38] 2025-07-27 22:54:38,270 | INFO     | PID=4051745 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:54:38] 2025-07-27 22:54:38,271 | INFO     | .. there are 30 such processes running
[2025-07-27 18:54:38] 2025-07-27 22:54:38,272 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:54:38] 2025-07-27 22:54:38,272 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:54:38] 2025-07-27 22:54:38,272 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:54:38] 2025-07-27 22:54:38,273 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:54:38] 2025-07-27 22:54:38,273 | INFO     | [monitor] control thread has ended
[2025-07-27 18:54:38] 2025-07-27 22:54:38,523 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:54:38] 2025-07-27 22:54:38,528 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:54:38] 2025-07-27 22:54:38,537 [wrapper] pilotpid: 4051745
[2025-07-27 18:54:38] 2025-07-27 22:54:38,545 [wrapper] Pilot exit status: 0
[2025-07-27 18:54:38] 2025-07-27 22:54:38,566 [wrapper] pandaids: 6747413876
[2025-07-27 18:54:38] 2025-07-27 22:54:38,710 [wrapper] cleanup supervisor_pilot  598190 4051746
[2025-07-27 18:54:38] 2025-07-27 22:54:38,716 [wrapper] Test setup, not cleaning
[2025-07-27 18:54:38] 2025-07-27 22:54:38,720 [wrapper] apfmon messages muted
[2025-07-27 18:54:38] 2025-07-27 22:54:38,723 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:54:38] 2025-07-27 22:54:38,728 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:54:38]  *** Error codes and diagnostics ***
[2025-07-27 18:54:38]     "exeErrorCode": 0,
[2025-07-27 18:54:38]     "exeErrorDiag": "",
[2025-07-27 18:54:38]     "pilotErrorCode": 0,
[2025-07-27 18:54:38]     "pilotErrorDiag": "",
[2025-07-27 18:54:38]  *** Listing of results directory ***
[2025-07-27 18:54:38] total 439288
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:41 pilot3.tar.gz
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:49 queuedata.json
[2025-07-27 18:54:38] -rwx------. 1 boincer umatlas     36292 Jul 27 10:52 runpilot2-wrapper.sh
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:54:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:14 run_atlas
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:14 job.xml
[2025-07-27 18:54:38] -rw-r--r--. 2 boincer umatlas 229365345 Jul 27 16:14 EVNT.45743347._002801.pool.root.1
[2025-07-27 18:54:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:14 start_atlas.sh
[2025-07-27 18:54:38] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:14 shared
[2025-07-27 18:54:38] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 16:14 input.tar.gz
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:14 boinc_lockfile
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 16:14 pandaJob.out
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas    980125 Jul 27 16:15 agis_schedconf.cvmfs.json
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:15 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:54:38] drwx------. 4 boincer umatlas      4096 Jul 27 16:15 pilot3
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas      6864 Jul 27 18:48 init_data.xml
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas       530 Jul 27 18:53 boinc_task_state.xml
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas 214226063 Jul 27 18:53 HITS.45743349._050302.pool.root.1
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas      1043 Jul 27 18:53 memory_monitor_summary.json
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas    351021 Jul 27 18:53 log.45743349._050302.job.log.tgz.1
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas      7832 Jul 27 18:54 heartbeat.json
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:54 boinc_mmap_file
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas        27 Jul 27 18:54 wrapper_checkpoint.txt
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas        95 Jul 27 18:54 pilot_heartbeat.json
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas       823 Jul 27 18:54 pilotlog.txt
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas    830304 Jul 27 18:54 log.45743349._050302.job.log.1
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas       357 Jul 27 18:54 output.list
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:54 runtime_log
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas   1198080 Jul 27 18:54 result.tar.gz
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 18:54 runtime_log.err
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas       654 Jul 27 18:54 pVILDmguH07n9Rq4apOajLDm4fhM0noT9bVof3QYDmPh2KDmXL1dRm.diag
[2025-07-27 18:54:38] -rw-r--r--. 1 boincer umatlas     21330 Jul 27 18:54 stderr.txt
[2025-07-27 18:54:38] HITS file was successfully produced:
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas 214226063 Jul 27 18:53 shared/HITS.pool.root.1
[2025-07-27 18:54:38]  *** Contents of shared directory: ***
[2025-07-27 18:54:38] total 434928
[2025-07-27 18:54:38] -rw-r--r--. 2 boincer umatlas 229365345 Jul 27 16:14 ATLAS.root_0
[2025-07-27 18:54:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:14 start_atlas.sh
[2025-07-27 18:54:38] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 16:14 input.tar.gz
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas 214226063 Jul 27 18:53 HITS.pool.root.1
[2025-07-27 18:54:38] -rw-------. 1 boincer umatlas   1198080 Jul 27 18:54 result.tar.gz
18:54:40 (4047071): run_atlas exited; CPU time 56824.843253
18:54:40 (4047071): called boinc_finish(0)

</stderr_txt>
]]>

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