Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:58:55 (572446): wrapper (7.7.26015): starting
15:58:55 (572446): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:58:55] Arguments: --nthreads 8
[2025-07-27 15:58:55] Threads: 8
[2025-07-27 15:58:55] Checking for CVMFS
[2025-07-27 15:58:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:58:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:58:55] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:58:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:58:55] 2.12.6.0 374543 18814 382800 148822 1 333 21270224 40960001 9469 16776704 2 63591263 99.782 75363110 22009 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 15:58:55] CVMFS is ok
[2025-07-27 15:58:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:58:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:58:55] Further information can be found at the LHC@home message board.
[2025-07-27 15:58:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:58:55] Checking for apptainer binary...
[2025-07-27 15:58:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:58:55] Running /usr/bin/apptainer --version
[2025-07-27 15:58:55] apptainer version 1.4.1-1.el9
[2025-07-27 15:58:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:58:55] c7-10-13.aglt2.org
[2025-07-27 15:58:55] apptainer works
[2025-07-27 15:58:55] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:58:55] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:58:56] Starting ATLAS job with PandaID=6747499855
[2025-07-27 15:58:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:24:19]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:24:19]  mtime=0
[2025-07-27 17:24:19]  protocol_id=None
[2025-07-27 17:24:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:24:19]  replicas=None
[2025-07-27 17:24:19]  scope=mc23_13p6TeV
[2025-07-27 17:24:19]  status=None
[2025-07-27 17:24:19]  status_code=0
[2025-07-27 17:24:19]  storage_token=
[2025-07-27 17:24:19]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747499855/log.45743349._051240.job.log.tgz.1
[2025-07-27 17:24:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/69/log.45743349._051240.job.log.tgz.1
[2025-07-27 17:24:19]  workdir=None
[2025-07-27 17:24:19] ]
[2025-07-27 17:24:19] 2025-07-27 21:23:38,412 | INFO     | transferring file log.45743349._051240.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747499855/log.45743349._051240.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:24:19] 2025-07-27 21:23:38,412 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747499855/log.45743349._051240.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._051240.job
[2025-07-27 17:24:19] 2025-07-27 21:23:38,421 | INFO     | monitor loop #377: job 0:6747499855 is in state 'stageout'
[2025-07-27 17:24:19] 2025-07-27 21:23:38,422 | WARNING  | aborting job monitor tasks since payload process 582496 is not running
[2025-07-27 17:24:19] 2025-07-27 21:23:38,437 | INFO     | adding to output.list: log.45743349._051240.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/69/log.45743349._051240.job.log.tg
[2025-07-27 17:24:19] 2025-07-27 21:23:38,438 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:24:19] 2025-07-27 21:23:38,438 | INFO     | summary of transferred files:
[2025-07-27 17:24:19] 2025-07-27 21:23:38,438 | INFO     |  -- lfn=log.45743349._051240.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:24:19] 2025-07-27 21:23:38,438 | INFO     | stage-out finished correctly
[2025-07-27 17:24:19] 2025-07-27 21:23:39,369 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:24:19] 2025-07-27 21:23:40,045 | INFO     | job 6747499855 has state=finished
[2025-07-27 17:24:19] 2025-07-27 21:23:40,045 | INFO     | preparing for final server update for job 6747499855 in state='finished'
[2025-07-27 17:24:19] 2025-07-27 21:23:40,106 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 17:24:19] 2025-07-27 21:23:40,106 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:24:19] 2025-07-27 21:23:40,106 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:24:19] 2025-07-27 21:23:40,106 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:24:19] 2025-07-27 21:23:40,106 | INFO     | job 6747499855 has finished - writing final server update
[2025-07-27 17:24:19] 2025-07-27 21:23:40,106 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:24:19] 2025-07-27 21:23:40,107 | INFO     | executing command: lscpu
[2025-07-27 17:24:19] 2025-07-27 21:23:40,176 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:24:19] 2025-07-27 21:23:40,929 | INFO     | monitor loop #378: job 0:6747499855 is in state 'finished'
[2025-07-27 17:24:19] 2025-07-27 21:23:40,930 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:24:19] 2025-07-27 21:23:43,433 | INFO     | monitor loop #379: job 0:6747499855 is in state 'finished'
[2025-07-27 17:24:19] 2025-07-27 21:23:43,433 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:24:19] 2025-07-27 21:23:45,390 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 17:24:19] 2025-07-27 21:23:45,394 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3164.6757343750005
[2025-07-27 17:24:19] 2025-07-27 21:23:45,403 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747499855/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:24:19] 2025-07-27 21:23:45,405 | INFO     | extracted standard info from prmon json
[2025-07-27 17:24:19] 2025-07-27 21:23:45,405 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:24:19] 2025-07-27 21:23:45,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:24:19] 2025-07-27 21:23:45,405 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:24:19] 2025-07-27 21:23:45,405 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:24:19] 2025-07-27 21:23:45,407 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:24:19] 2025-07-27 21:23:45,407 | INFO     | sum of square deviations: 136095575.0
[2025-07-27 17:24:19] 2025-07-27 21:23:45,407 | INFO     | sum of deviations: -7799724435.0
[2025-07-27 17:24:19] 2025-07-27 21:23:45,407 | INFO     | mean x: 1753648973.5
[2025-07-27 17:24:19] 2025-07-27 21:23:45,407 | INFO     | mean y: 2251408.6315789474
[2025-07-27 17:24:19] 2025-07-27 21:23:45,408 | INFO     | -- intersect: 100504995520.77937
[2025-07-27 17:24:19] 2025-07-27 21:23:45,408 | INFO     | intersect: 100504995520.77937
[2025-07-27 17:24:19] 2025-07-27 21:23:45,408 | INFO     | chi2: 0.17601631974833412
[2025-07-27 17:24:19] 2025-07-27 21:23:45,408 | INFO     | -- intersect: 100504995520.77937
[2025-07-27 17:24:19] 2025-07-27 21:23:45,408 | INFO     | current memory leak: -57.31 B/s (using 76 data points, chi2=0.18)
[2025-07-27 17:24:19] 2025-07-27 21:23:45,408 | INFO     | could have reported an average CPU frequency of 3186 MHz (6 samples)
[2025-07-27 17:24:19] 2025-07-27 21:23:45,408 | INFO     | ..............................
[2025-07-27 17:24:19] 2025-07-27 21:23:45,408 | INFO     | . Timing measurements:
[2025-07-27 17:24:19] 2025-07-27 21:23:45,409 | INFO     | . get job = 0 s
[2025-07-27 17:24:19] 2025-07-27 21:23:45,409 | INFO     | . initial setup = 2 s
[2025-07-27 17:24:19] 2025-07-27 21:23:45,409 | INFO     | . payload setup = 9 s
[2025-07-27 17:24:19] 2025-07-27 21:23:45,409 | INFO     | . stage-in = 0 s
[2025-07-27 17:24:19] 2025-07-27 21:23:45,409 | INFO     | . payload execution = 5039 s
[2025-07-27 17:24:19] 2025-07-27 21:23:45,409 | INFO     | . stage-out = 0 s
[2025-07-27 17:24:19] 2025-07-27 21:23:45,409 | INFO     | . log creation = 0 s
[2025-07-27 17:24:19] 2025-07-27 21:23:45,409 | INFO     | ..............................
[2025-07-27 17:24:19] 2025-07-27 21:23:45,491 | INFO     | 
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | job summary report
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | --------------------------------------------------
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | PanDA job id: 6747499855
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | task id: 45743349
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | errors: (none)
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | pilot state: finished 
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | transexitcode: 0
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | exeerrorcode: 0
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | exeerrordiag: 
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | exitcode: 0
[2025-07-27 17:24:19] 2025-07-27 21:23:45,492 | INFO     | exitmsg: OK
[2025-07-27 17:24:19] 2025-07-27 21:23:45,493 | INFO     | cpuconsumptiontime: 36885 s
[2025-07-27 17:24:19] 2025-07-27 21:23:45,493 | INFO     | nevents: 400
[2025-07-27 17:24:19] 2025-07-27 21:23:45,493 | INFO     | neventsw: 0
[2025-07-27 17:24:19] 2025-07-27 21:23:45,493 | INFO     | pid: 582496
[2025-07-27 17:24:19] 2025-07-27 21:23:45,493 | INFO     | pgrp: 582496
[2025-07-27 17:24:19] 2025-07-27 21:23:45,493 | INFO     | corecount: 8
[2025-07-27 17:24:19] 2025-07-27 21:23:45,493 | INFO     | event service: False
[2025-07-27 17:24:19] 2025-07-27 21:23:45,493 | INFO     | sizes: {0: 2397424, 6: 2397686, 11: 2397714, 5052: 2433011, 5053: 2433011, 5059: 2433205}
[2025-07-27 17:24:19] 2025-07-27 21:23:45,493 | INFO     | --------------------------------------------------
[2025-07-27 17:24:19] 2025-07-27 21:23:45,493 | INFO     | 
[2025-07-27 17:24:19] 2025-07-27 21:23:45,493 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 17:24:19] 2025-07-27 21:23:45,523 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,523 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,523 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,523 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,523 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,523 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,524 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:24:19] 2025-07-27 21:23:45,525 | INFO     | job 6747499855 has completed (purged errors)
[2025-07-27 17:24:19] 2025-07-27 21:23:45,525 | INFO     | overall cleanup function is called
[2025-07-27 17:24:19] 2025-07-27 21:23:46,529 | INFO     | --- collectZombieJob: --- 10, [582496]
[2025-07-27 17:24:19] 2025-07-27 21:23:46,529 | INFO     | zombie collector waiting for pid 582496
[2025-07-27 17:24:19] 2025-07-27 21:23:46,529 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:24:19] 2025-07-27 21:23:46,529 | INFO     | collected zombie processes
[2025-07-27 17:24:19] 2025-07-27 21:23:46,529 | INFO     | will attempt to kill all subprocesses of pid=582496
[2025-07-27 17:24:19] 2025-07-27 21:23:46,771 | INFO     | process IDs to be killed: [582496] (in reverse order)
[2025-07-27 17:24:19] 2025-07-27 21:23:46,880 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:24:19] 2025-07-27 21:23:46,880 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:24:19] 2025-07-27 21:23:46,893 | INFO     | did not find any defunct processes belonging to 582496
[2025-07-27 17:24:19] 2025-07-27 21:23:46,905 | INFO     | did not find any defunct processes belonging to 582496
[2025-07-27 17:24:19] 2025-07-27 21:23:46,906 | INFO     | ready for new job
[2025-07-27 17:24:19] 2025-07-27 21:23:46,906 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:24:19] 2025-07-27 21:23:46,907 | INFO     | ***************************************
[2025-07-27 17:24:19] 2025-07-27 21:23:46,908 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:24:19] 2025-07-27 21:23:46,908 | INFO     | ***************************************
[2025-07-27 17:24:19] 2025-07-27 21:23:46,908 | INFO     | 
[2025-07-27 17:24:19] 2025-07-27 21:23:46,924 | INFO     | architecture information:
[2025-07-27 17:24:19] 2025-07-27 21:23:46,925 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:24:19] 2025-07-27 21:23:46,941 | INFO     | cat /etc/os-release:
[2025-07-27 17:24:19] NAME="CentOS Linux"
[2025-07-27 17:24:19] VERSION="7 (Core)"
[2025-07-27 17:24:19] ID="centos"
[2025-07-27 17:24:19] ID_LIKE="rhel fedora"
[2025-07-27 17:24:19] VERSION_ID="7"
[2025-07-27 17:24:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:24:19] ANSI_COLOR="0;31"
[2025-07-27 17:24:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:24:19] HOME_URL="https://www.centos.org/"
[2025-07-27 17:24:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:24:19] 
[2025-07-27 17:24:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:24:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:24:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:24:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:24:19] 
[2025-07-27 17:24:19] 2025-07-27 21:23:46,942 | INFO     | ***************************************
[2025-07-27 17:24:19] 2025-07-27 21:23:47,444 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 17:24:19] 2025-07-27 21:23:47,468 | INFO     | sufficient remaining disk space (86032515072 B)
[2025-07-27 17:24:19] 2025-07-27 21:23:47,468 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:24:19] 2025-07-27 21:23:47,468 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:24:19] 2025-07-27 21:23:47,468 | INFO     | update_server=False
[2025-07-27 17:24:19] 2025-07-27 21:23:47,468 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:24:19] 2025-07-27 21:23:47,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:24:19] 2025-07-27 21:23:47,468 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:24:19] 2025-07-27 21:23:47,469 | INFO     | aborting loop
[2025-07-27 17:24:19] 2025-07-27 21:23:47,469 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:24:19] 2025-07-27 21:23:48,116 | INFO     | all payload control threads have been joined
[2025-07-27 17:24:19] 2025-07-27 21:23:48,117 | INFO     | all data control threads have been joined
[2025-07-27 17:24:19] 2025-07-27 21:23:48,473 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:48,473 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:48,474 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:48,818 | INFO     | all job control threads have been joined
[2025-07-27 17:24:19] 2025-07-27 21:23:49,117 | INFO     | [data] control thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:49,121 | INFO     | [payload] control thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:49,142 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:49,264 | INFO     | [job] validate thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:49,268 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:49,475 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:49,582 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:49,711 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:49,714 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:49,823 | INFO     | [job] control thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:49,846 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:49,962 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:24:19] 2025-07-27 21:23:50,056 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:53,967 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:24:19] 2025-07-27 21:23:54,902 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140669084370752)>', '<ExcThread(monitor, started 140668726912768)>']
[2025-07-27 17:24:19] 2025-07-27 21:23:59,909 | INFO     | all workflow threads have been joined
[2025-07-27 17:24:19] 2025-07-27 21:23:59,910 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:24:19] 2025-07-27 21:23:59,910 | INFO     | traces error code: 0
[2025-07-27 17:24:19] 2025-07-27 21:23:59,911 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:24:19] 2025-07-27 21:24:18,860 | INFO     | PID=576027 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 17:24:19] 2025-07-27 21:24:18,861 | INFO     | .. there are 10 such processes running
[2025-07-27 17:24:19] 2025-07-27 21:24:18,861 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:24:19] 2025-07-27 21:24:18,861 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:24:19] 2025-07-27 21:24:18,861 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:24:19] 2025-07-27 21:24:18,861 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:24:19] 2025-07-27 21:24:18,861 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 17:24:19] 2025-07-27 21:24:18,861 | INFO     | [monitor] control thread has ended
[2025-07-27 17:24:19] 2025-07-27 21:24:18,952 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:24:19] 2025-07-27 21:24:18,956 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:24:19] 2025-07-27 21:24:18,958 [wrapper] pilotpid: 576027
[2025-07-27 17:24:19] 2025-07-27 21:24:18,960 [wrapper] Pilot exit status: 0
[2025-07-27 17:24:19] 2025-07-27 21:24:18,973 [wrapper] pandaids: 6747499855
[2025-07-27 17:24:19] 2025-07-27 21:24:19,042 [wrapper] cleanup supervisor_pilot  693928 576028
[2025-07-27 17:24:19] 2025-07-27 21:24:19,047 [wrapper] Test setup, not cleaning
[2025-07-27 17:24:19] 2025-07-27 21:24:19,050 [wrapper] apfmon messages muted
[2025-07-27 17:24:19] 2025-07-27 21:24:19,057 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:24:19] 2025-07-27 21:24:19,061 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:24:19]  *** Error codes and diagnostics ***
[2025-07-27 17:24:19]     "exeErrorCode": 0,
[2025-07-27 17:24:19]     "exeErrorDiag": "",
[2025-07-27 17:24:19]     "pilotErrorCode": 0,
[2025-07-27 17:24:19]     "pilotErrorDiag": "",
[2025-07-27 17:24:19]  *** Listing of results directory ***
[2025-07-27 17:24:19] total 428300
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 17:24:19] -rwx------. 1 boincer umatlas     36292 Jul 27 11:01 runpilot2-wrapper.sh
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:01 queuedata.json
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:24:19] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:58 run_atlas
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:58 job.xml
[2025-07-27 17:24:19] -rw-r--r--. 2 boincer umatlas 229530435 Jul 27 15:58 EVNT.45743347._002743.pool.root.1
[2025-07-27 17:24:19] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 15:58 input.tar.gz
[2025-07-27 17:24:19] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:58 start_atlas.sh
[2025-07-27 17:24:19] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:58 shared
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:58 boinc_lockfile
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 15:58 pandaJob.out
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas    980125 Jul 27 15:59 agis_schedconf.cvmfs.json
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:59 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:24:19] drwx------. 4 boincer umatlas      4096 Jul 27 15:59 pilot3
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas      6897 Jul 27 17:19 init_data.xml
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas 203535466 Jul 27 17:23 HITS.45743349._051240.pool.root.1
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:23 boinc_task_state.xml
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas      1022 Jul 27 17:23 memory_monitor_summary.json
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas    319909 Jul 27 17:23 log.45743349._051240.job.log.tgz.1
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas        95 Jul 27 17:23 pilot_heartbeat.json
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas      7766 Jul 27 17:23 heartbeat.json
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:24 boinc_mmap_file
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:24 wrapper_checkpoint.txt
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas       892 Jul 27 17:24 pilotlog.txt
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas    499325 Jul 27 17:24 log.45743349._051240.job.log.1
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas       357 Jul 27 17:24 output.list
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:24 runtime_log
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas    839680 Jul 27 17:24 result.tar.gz
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 17:24 runtime_log.err
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas       653 Jul 27 17:24 r4dKDmW3H07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOcVLDmfvllHm.diag
[2025-07-27 17:24:19] -rw-r--r--. 1 boincer umatlas     21669 Jul 27 17:24 stderr.txt
[2025-07-27 17:24:19] HITS file was successfully produced:
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas 203535466 Jul 27 17:23 shared/HITS.pool.root.1
[2025-07-27 17:24:19]  *** Contents of shared directory: ***
[2025-07-27 17:24:19] total 424292
[2025-07-27 17:24:19] -rw-r--r--. 2 boincer umatlas 229530435 Jul 27 15:58 ATLAS.root_0
[2025-07-27 17:24:19] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 15:58 input.tar.gz
[2025-07-27 17:24:19] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:58 start_atlas.sh
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas 203535466 Jul 27 17:23 HITS.pool.root.1
[2025-07-27 17:24:19] -rw-------. 1 boincer umatlas    839680 Jul 27 17:24 result.tar.gz
17:24:21 (572446): run_atlas exited; CPU time 36942.753986
17:24:21 (572446): called boinc_finish(0)

</stderr_txt>
]]>

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