Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:52:33 (2758940): wrapper (7.7.26015): starting
15:52:33 (2758940): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:52:33] Arguments: --nthreads 8
[2025-07-27 15:52:33] Threads: 8
[2025-07-27 15:52:33] Checking for CVMFS
[2025-07-27 15:52:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:52:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:52:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:52:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:52:34] 2.12.6.0 1094862 18825 414684 148822 2 467 21581432 32935936 15594 16776704 1 118612993 99.602 120477848 20196 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 15:52:34] CVMFS is ok
[2025-07-27 15:52:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:52:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:52:34] Further information can be found at the LHC@home message board.
[2025-07-27 15:52:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:52:34] Checking for apptainer binary...
[2025-07-27 15:52:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:52:34] Running /usr/bin/apptainer --version
[2025-07-27 15:52:34] apptainer version 1.4.1-1.el9
[2025-07-27 15:52:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:52:34] lc-12-33.aglt2.org
[2025-07-27 15:52:34] apptainer works
[2025-07-27 15:52:34] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:52:34] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:52:34] Starting ATLAS job with PandaID=6747499910
[2025-07-27 15:52:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:32:04]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:32:04]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6747499910/log.45743349._051295.job.log.tgz.1
[2025-07-27 17:32:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/0d/log.45743349._051295.job.log.tgz.1
[2025-07-27 17:32:04]  workdir=None
[2025-07-27 17:32:04] ]
[2025-07-27 17:32:04] 2025-07-27 21:31:25,385 | INFO     | transferring file log.45743349._051295.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6747499910/log.45743349._051295.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:32:04] 2025-07-27 21:31:25,386 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6747499910/log.45743349._051295.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._051295.job
[2025-07-27 17:32:04] 2025-07-27 21:31:25,407 | INFO     | adding to output.list: log.45743349._051295.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/0d/log.45743349._051295.job.log.tg
[2025-07-27 17:32:04] 2025-07-27 21:31:25,408 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:32:04] 2025-07-27 21:31:25,408 | INFO     | summary of transferred files:
[2025-07-27 17:32:04] 2025-07-27 21:31:25,408 | INFO     |  -- lfn=log.45743349._051295.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:32:04] 2025-07-27 21:31:25,409 | INFO     | stage-out finished correctly
[2025-07-27 17:32:04] 2025-07-27 21:31:26,300 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:32:04] 2025-07-27 21:31:26,379 | INFO     | job 6747499910 has state=finished
[2025-07-27 17:32:04] 2025-07-27 21:31:26,379 | INFO     | preparing for final server update for job 6747499910 in state='finished'
[2025-07-27 17:32:04] 2025-07-27 21:31:26,379 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:32:04] 2025-07-27 21:31:26,380 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:32:04] 2025-07-27 21:31:26,380 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:32:04] 2025-07-27 21:31:26,380 | INFO     | job 6747499910 has finished - writing final server update
[2025-07-27 17:32:04] 2025-07-27 21:31:26,380 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:32:04] 2025-07-27 21:31:26,381 | INFO     | executing command: lscpu
[2025-07-27 17:32:04] 2025-07-27 21:31:26,454 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:32:04] 2025-07-27 21:31:27,804 | WARNING  | process 2770851 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 17:32:04] 2025-07-27 21:31:27,805 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747499910/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:32:04] 2025-07-27 21:31:27,806 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747499910/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:32:04] 2025-07-27 21:31:27,807 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2940717 B
[2025-07-27 17:32:04] 2025-07-27 21:31:27,807 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16263 B
[2025-07-27 17:32:04] 2025-07-27 21:31:27,807 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 17:32:04] 2025-07-27 21:31:31,318 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 17:32:04] 2025-07-27 21:31:31,338 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2517.087093750001
[2025-07-27 17:32:04] 2025-07-27 21:31:31,340 | INFO     | sufficient remaining disk space (75581358080 B)
[2025-07-27 17:32:04] 2025-07-27 21:31:31,340 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 17:32:04] 2025-07-27 21:31:31,341 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6747499910: 3248427 B (within 2537553920 B limit)
[2025-07-27 17:32:04] 2025-07-27 21:31:31,341 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6747499910/HITS.45743349._051295.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 17:32:04] 2025-07-27 21:31:31,342 | INFO     | total size of present files: 0 B (workdir size: 3248427 B)
[2025-07-27 17:32:04] 2025-07-27 21:31:31,342 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6747499910/HITS.45743349._051295.pool.root.1 since it does not exist
[2025-07-27 17:32:04] 2025-07-27 21:31:31,359 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747499910/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:32:04] 2025-07-27 21:31:31,361 | INFO     | extracted standard info from prmon json
[2025-07-27 17:32:04] 2025-07-27 21:31:31,361 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:32:04] 2025-07-27 21:31:31,361 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:32:04] 2025-07-27 21:31:31,361 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:32:04] 2025-07-27 21:31:31,362 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:32:04] 2025-07-27 21:31:31,364 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:32:04] 2025-07-27 21:31:31,364 | INFO     | sum of square deviations: 226022842.5
[2025-07-27 17:32:04] 2025-07-27 21:31:31,365 | INFO     | sum of deviations: -5737943314.5
[2025-07-27 17:32:04] 2025-07-27 21:31:31,365 | INFO     | mean x: 1753649014.5
[2025-07-27 17:32:04] 2025-07-27 21:31:31,365 | INFO     | mean y: 2230341.5
[2025-07-27 17:32:04] 2025-07-27 21:31:31,365 | INFO     | -- intersect: 44521352955.09065
[2025-07-27 17:32:04] 2025-07-27 21:31:31,366 | INFO     | intersect: 44521352955.09065
[2025-07-27 17:32:04] 2025-07-27 21:31:31,366 | INFO     | chi2: 0.06203215378076236
[2025-07-27 17:32:04] 2025-07-27 21:31:31,366 | INFO     | -- intersect: 44521352955.09065
[2025-07-27 17:32:04] 2025-07-27 21:31:31,366 | INFO     | current memory leak: -25.39 B/s (using 90 data points, chi2=0.06)
[2025-07-27 17:32:04] 2025-07-27 21:31:31,366 | INFO     | could have reported an average CPU frequency of 2556 MHz (7 samples)
[2025-07-27 17:32:04] 2025-07-27 21:31:31,367 | INFO     | ..............................
[2025-07-27 17:32:04] 2025-07-27 21:31:31,367 | INFO     | . Timing measurements:
[2025-07-27 17:32:04] 2025-07-27 21:31:31,367 | INFO     | . get job = 0 s
[2025-07-27 17:32:04] 2025-07-27 21:31:31,367 | INFO     | . initial setup = 2 s
[2025-07-27 17:32:04] 2025-07-27 21:31:31,367 | INFO     | . payload setup = 7 s
[2025-07-27 17:32:04] 2025-07-27 21:31:31,368 | INFO     | . stage-in = 0 s
[2025-07-27 17:32:04] 2025-07-27 21:31:31,368 | INFO     | . payload execution = 5891 s
[2025-07-27 17:32:04] 2025-07-27 21:31:31,368 | INFO     | . stage-out = 0 s
[2025-07-27 17:32:04] 2025-07-27 21:31:31,368 | INFO     | . log creation = 0 s
[2025-07-27 17:32:04] 2025-07-27 21:31:31,368 | INFO     | ..............................
[2025-07-27 17:32:04] 2025-07-27 21:31:31,466 | INFO     | 
[2025-07-27 17:32:04] 2025-07-27 21:31:31,466 | INFO     | job summary report
[2025-07-27 17:32:04] 2025-07-27 21:31:31,466 | INFO     | --------------------------------------------------
[2025-07-27 17:32:04] 2025-07-27 21:31:31,466 | INFO     | PanDA job id: 6747499910
[2025-07-27 17:32:04] 2025-07-27 21:31:31,466 | INFO     | task id: 45743349
[2025-07-27 17:32:04] 2025-07-27 21:31:31,467 | INFO     | errors: (none)
[2025-07-27 17:32:04] 2025-07-27 21:31:31,467 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:32:04] 2025-07-27 21:31:31,467 | INFO     | pilot state: finished 
[2025-07-27 17:32:04] 2025-07-27 21:31:31,467 | INFO     | transexitcode: 0
[2025-07-27 17:32:04] 2025-07-27 21:31:31,467 | INFO     | exeerrorcode: 0
[2025-07-27 17:32:04] 2025-07-27 21:31:31,467 | INFO     | exeerrordiag: 
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | exitcode: 0
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | exitmsg: OK
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | cpuconsumptiontime: 43695 s
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | nevents: 400
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | neventsw: 0
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | pid: 2770851
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | pgrp: 2770851
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | corecount: 8
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | event service: False
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | sizes: {0: 2397304, 1: 2397503, 6: 2397765, 12: 2397793, 5902: 2424526, 5903: 2433524, 5904: 2433708, 5909: 2433930}
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | --------------------------------------------------
[2025-07-27 17:32:04] 2025-07-27 21:31:31,468 | INFO     | 
[2025-07-27 17:32:04] 2025-07-27 21:31:31,469 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 17:32:04] 2025-07-27 21:31:31,491 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,491 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,492 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,493 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,493 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,493 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,493 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:32:04] 2025-07-27 21:31:31,493 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,493 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:32:04] 2025-07-27 21:31:31,493 | INFO     | job 6747499910 has completed (purged errors)
[2025-07-27 17:32:04] 2025-07-27 21:31:31,493 | INFO     | overall cleanup function is called
[2025-07-27 17:32:04] 2025-07-27 21:31:31,916 | INFO     | number of running child processes to parent process 2770851: 1
[2025-07-27 17:32:04] 2025-07-27 21:31:31,916 | INFO     | maximum number of monitored processes: 6
[2025-07-27 17:32:04] 2025-07-27 21:31:31,917 | INFO     | aborting job monitoring since job object (job id=6747499910) has expired
[2025-07-27 17:32:04] 2025-07-27 21:31:32,504 | INFO     | --- collectZombieJob: --- 10, [2770851]
[2025-07-27 17:32:04] 2025-07-27 21:31:32,505 | INFO     | zombie collector waiting for pid 2770851
[2025-07-27 17:32:04] 2025-07-27 21:31:32,505 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:32:04] 2025-07-27 21:31:32,505 | INFO     | collected zombie processes
[2025-07-27 17:32:04] 2025-07-27 21:31:32,505 | INFO     | will attempt to kill all subprocesses of pid=2770851
[2025-07-27 17:32:04] 2025-07-27 21:31:32,927 | INFO     | process IDs to be killed: [2770851] (in reverse order)
[2025-07-27 17:32:04] 2025-07-27 21:31:33,075 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:32:04] 2025-07-27 21:31:33,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:32:04] 2025-07-27 21:31:33,092 | INFO     | did not find any defunct processes belonging to 2770851
[2025-07-27 17:32:04] 2025-07-27 21:31:33,108 | INFO     | did not find any defunct processes belonging to 2770851
[2025-07-27 17:32:04] 2025-07-27 21:31:33,108 | INFO     | ready for new job
[2025-07-27 17:32:04] 2025-07-27 21:31:33,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:32:04] 2025-07-27 21:31:33,110 | INFO     | ***************************************
[2025-07-27 17:32:04] 2025-07-27 21:31:33,110 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:32:04] 2025-07-27 21:31:33,110 | INFO     | ***************************************
[2025-07-27 17:32:04] 2025-07-27 21:31:33,110 | INFO     | 
[2025-07-27 17:32:04] 2025-07-27 21:31:33,128 | INFO     | architecture information:
[2025-07-27 17:32:04] 2025-07-27 21:31:33,128 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:32:04] 2025-07-27 21:31:33,143 | INFO     | cat /etc/os-release:
[2025-07-27 17:32:04] NAME="CentOS Linux"
[2025-07-27 17:32:04] VERSION="7 (Core)"
[2025-07-27 17:32:04] ID="centos"
[2025-07-27 17:32:04] ID_LIKE="rhel fedora"
[2025-07-27 17:32:04] VERSION_ID="7"
[2025-07-27 17:32:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:32:04] ANSI_COLOR="0;31"
[2025-07-27 17:32:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:32:04] HOME_URL="https://www.centos.org/"
[2025-07-27 17:32:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:32:04] 
[2025-07-27 17:32:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:32:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:32:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:32:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:32:04] 
[2025-07-27 17:32:04] 2025-07-27 21:31:33,143 | INFO     | ***************************************
[2025-07-27 17:32:04] 2025-07-27 21:31:33,646 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 17:32:04] 2025-07-27 21:31:33,662 | INFO     | sufficient remaining disk space (75585552384 B)
[2025-07-27 17:32:04] 2025-07-27 21:31:33,662 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:32:04] 2025-07-27 21:31:33,663 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:32:04] 2025-07-27 21:31:33,663 | INFO     | update_server=False
[2025-07-27 17:32:04] 2025-07-27 21:31:33,663 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:32:04] 2025-07-27 21:31:33,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:32:04] 2025-07-27 21:31:33,663 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:32:04] 2025-07-27 21:31:33,665 | INFO     | aborting loop
[2025-07-27 17:32:04] 2025-07-27 21:31:33,946 | INFO     | all job control threads have been joined
[2025-07-27 17:32:04] 2025-07-27 21:31:34,176 | INFO     | all data control threads have been joined
[2025-07-27 17:32:04] 2025-07-27 21:31:34,668 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:34,670 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:34,952 | INFO     | [job] control thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:35,049 | INFO     | all payload control threads have been joined
[2025-07-27 17:32:04] 2025-07-27 21:31:35,160 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:35,177 | INFO     | [job] validate thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:35,181 | INFO     | [data] control thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:35,317 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:35,421 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:35,670 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:35,946 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:35,971 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:36,055 | INFO     | [payload] control thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:36,091 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:36,475 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:32:04] 2025-07-27 21:31:36,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:32:04] 2025-07-27 21:31:37,481 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:40,893 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:44,424 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:32:04] 2025-07-27 21:31:45,430 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:32:04] 2025-07-27 21:31:45,489 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140435117262656)>', '<ExcThread(monitor, started 140434332436224)>']
[2025-07-27 17:32:04] 2025-07-27 21:31:50,514 | INFO     | all workflow threads have been joined
[2025-07-27 17:32:04] 2025-07-27 21:31:50,515 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:32:04] 2025-07-27 21:31:50,515 | INFO     | traces error code: 0
[2025-07-27 17:32:04] 2025-07-27 21:31:50,516 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:32:04] 2025-07-27 21:32:04,504 | INFO     | PID=2762755 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:32:04] 2025-07-27 21:32:04,504 | INFO     | .. there are 25 such processes running
[2025-07-27 17:32:04] 2025-07-27 21:32:04,505 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:32:04] 2025-07-27 21:32:04,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:32:04] 2025-07-27 21:32:04,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:32:04] 2025-07-27 21:32:04,505 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:32:04] 2025-07-27 21:32:04,505 | INFO     | [monitor] control thread has ended
[2025-07-27 17:32:04] 2025-07-27 21:32:04,760 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:32:04] 2025-07-27 21:32:04,763 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:32:04] 2025-07-27 21:32:04,767 [wrapper] pilotpid: 2762755
[2025-07-27 17:32:04] 2025-07-27 21:32:04,771 [wrapper] Pilot exit status: 0
[2025-07-27 17:32:04] 2025-07-27 21:32:04,782 [wrapper] pandaids: 6747499910
[2025-07-27 17:32:04] 2025-07-27 21:32:04,868 [wrapper] cleanup supervisor_pilot 3277250 2762756
[2025-07-27 17:32:04] 2025-07-27 21:32:04,872 [wrapper] Test setup, not cleaning
[2025-07-27 17:32:04] 2025-07-27 21:32:04,876 [wrapper] apfmon messages muted
[2025-07-27 17:32:04] 2025-07-27 21:32:04,879 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:32:04] 2025-07-27 21:32:04,881 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:32:04]  *** Error codes and diagnostics ***
[2025-07-27 17:32:04]     "exeErrorCode": 0,
[2025-07-27 17:32:04]     "exeErrorDiag": "",
[2025-07-27 17:32:04]     "pilotErrorCode": 0,
[2025-07-27 17:32:04]     "pilotErrorDiag": "",
[2025-07-27 17:32:04]  *** Listing of results directory ***
[2025-07-27 17:32:04] total 348660
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:06 queuedata.json
[2025-07-27 17:32:04] -rwx------. 1 boincer umatlas     36292 Jul 27 11:06 runpilot2-wrapper.sh
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:32:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:52 run_atlas
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:52 job.xml
[2025-07-27 17:32:04] -rw-r--r--. 2 boincer umatlas 143611053 Jul 27 15:52 EVNT.45743347._002746.pool.root.1
[2025-07-27 17:32:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:52 start_atlas.sh
[2025-07-27 17:32:04] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:52 shared
[2025-07-27 17:32:04] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 15:52 input.tar.gz
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:52 boinc_lockfile
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 15:52 pandaJob.out
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas    980125 Jul 27 15:52 agis_schedconf.cvmfs.json
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:52 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:32:04] drwx------. 4 boincer umatlas      4096 Jul 27 15:52 pilot3
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas      6878 Jul 27 17:29 init_data.xml
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas 207787112 Jul 27 17:30 HITS.45743349._051295.pool.root.1
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:30 boinc_task_state.xml
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas      1037 Jul 27 17:31 memory_monitor_summary.json
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas    308607 Jul 27 17:31 log.45743349._051295.job.log.tgz.1
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas      7818 Jul 27 17:31 heartbeat.json
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:32 boinc_mmap_file
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:32 wrapper_checkpoint.txt
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas        95 Jul 27 17:32 pilot_heartbeat.json
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas       823 Jul 27 17:32 pilotlog.txt
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas    565823 Jul 27 17:32 log.45743349._051295.job.log.1
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas       357 Jul 27 17:32 output.list
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:32 runtime_log
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas    890880 Jul 27 17:32 result.tar.gz
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 17:32 runtime_log.err
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas       652 Jul 27 17:32 qv0MDmZ8H07n9Rq4apOajLDm4fhM0noT9bVof3QYDmYj2KDmqA71Jo.diag
[2025-07-27 17:32:04] -rw-r--r--. 1 boincer umatlas     22561 Jul 27 17:32 stderr.txt
[2025-07-27 17:32:04] HITS file was successfully produced:
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas 207787112 Jul 27 17:30 shared/HITS.pool.root.1
[2025-07-27 17:32:04]  *** Contents of shared directory: ***
[2025-07-27 17:32:04] total 344596
[2025-07-27 17:32:04] -rw-r--r--. 2 boincer umatlas 143611053 Jul 27 15:52 ATLAS.root_0
[2025-07-27 17:32:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:52 start_atlas.sh
[2025-07-27 17:32:04] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 15:52 input.tar.gz
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas 207787112 Jul 27 17:30 HITS.pool.root.1
[2025-07-27 17:32:04] -rw-------. 1 boincer umatlas    890880 Jul 27 17:32 result.tar.gz
17:32:06 (2758940): run_atlas exited; CPU time 44004.172022
17:32:06 (2758940): called boinc_finish(0)

</stderr_txt>
]]>

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