Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:42:47 (4010482): wrapper (7.7.26015): starting
17:42:47 (4010482): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 17:42:47] Arguments: --nthreads 12
[2025-07-27 17:42:47] Threads: 12
[2025-07-27 17:42:47] Checking for CVMFS
[2025-07-27 17:42:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:42:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:42:47] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:42:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:42:47] 2.12.6.0 2624825 18919 337148 148825 2 422 36489104 40960001 8959 16776704 0 58442578 99.779 53563894 31203 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 17:42:47] CVMFS is ok
[2025-07-27 17:42:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:42:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:42:47] Further information can be found at the LHC@home message board.
[2025-07-27 17:42:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:42:47] Checking for apptainer binary...
[2025-07-27 17:42:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:42:47] Running /usr/bin/apptainer --version
[2025-07-27 17:42:47] apptainer version 1.4.1-1.el9
[2025-07-27 17:42:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:42:48] c6-8-12-1.aglt2.org
[2025-07-27 17:42:48] apptainer works
[2025-07-27 17:42:48] Set ATHENA_PROC_NUMBER=12
[2025-07-27 17:42:48] Set ATHENA_CORE_NUMBER=12
[2025-07-27 17:42:48] Starting ATLAS job with PandaID=6744771616
[2025-07-27 17:42:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:04:31]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:04:31]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744771616/log.45743349._002051.job.log.tgz.1
[2025-07-27 19:04:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/f5/log.45743349._002051.job.log.tgz.1
[2025-07-27 19:04:31]  workdir=None
[2025-07-27 19:04:31] ]
[2025-07-27 19:04:31] 2025-07-27 23:03:51,560 | INFO     | transferring file log.45743349._002051.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744771616/log.45743349._002051.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:04:31] 2025-07-27 23:03:51,560 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744771616/log.45743349._002051.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._002051.job
[2025-07-27 19:04:31] 2025-07-27 23:03:51,586 | INFO     | adding to output.list: log.45743349._002051.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/f5/log.45743349._002051.job.log.tg
[2025-07-27 19:04:31] 2025-07-27 23:03:51,587 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:04:31] 2025-07-27 23:03:51,587 | INFO     | summary of transferred files:
[2025-07-27 19:04:31] 2025-07-27 23:03:51,587 | INFO     |  -- lfn=log.45743349._002051.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:04:31] 2025-07-27 23:03:51,587 | INFO     | stage-out finished correctly
[2025-07-27 19:04:31] 2025-07-27 23:03:51,671 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:04:31] 2025-07-27 23:03:53,287 | INFO     | job 6744771616 has state=finished
[2025-07-27 19:04:31] 2025-07-27 23:03:53,288 | INFO     | preparing for final server update for job 6744771616 in state='finished'
[2025-07-27 19:04:31] 2025-07-27 23:03:53,289 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:04:31] 2025-07-27 23:03:53,289 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:04:31] 2025-07-27 23:03:53,289 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:04:31] 2025-07-27 23:03:53,289 | INFO     | job 6744771616 has finished - writing final server update
[2025-07-27 19:04:31] 2025-07-27 23:03:53,289 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:04:31] 2025-07-27 23:03:53,290 | INFO     | executing command: lscpu
[2025-07-27 19:04:31] 2025-07-27 23:03:53,357 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:04:31] 2025-07-27 23:03:55,383 | WARNING  | process 4021062 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 19:04:31] 2025-07-27 23:03:55,384 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744771616/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:04:31] 2025-07-27 23:03:55,385 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744771616/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:04:31] 2025-07-27 23:03:55,386 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3797457 B
[2025-07-27 19:04:31] 2025-07-27 23:03:55,386 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15536 B
[2025-07-27 19:04:31] 2025-07-27 23:03:55,386 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 19:04:31] 2025-07-27 23:03:58,607 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 19:04:31] 2025-07-27 23:03:58,628 | INFO     | sufficient remaining disk space (58812530688 B)
[2025-07-27 19:04:31] 2025-07-27 23:03:58,629 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 19:04:31] 2025-07-27 23:03:58,630 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6744771616: 4097363 B (within 2537553920 B limit)
[2025-07-27 19:04:31] 2025-07-27 23:03:58,630 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6744771616/HITS.45743349._002051.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 19:04:31] 2025-07-27 23:03:58,630 | INFO     | total size of present files: 0 B (workdir size: 4097363 B)
[2025-07-27 19:04:31] 2025-07-27 23:03:58,630 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6744771616/HITS.45743349._002051.pool.root.1 since it does not exist
[2025-07-27 19:04:31] 2025-07-27 23:03:58,633 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2790.096499999999
[2025-07-27 19:04:31] 2025-07-27 23:03:58,650 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744771616/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:04:31] 2025-07-27 23:03:58,651 | INFO     | extracted standard info from prmon json
[2025-07-27 19:04:31] 2025-07-27 23:03:58,651 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:04:31] 2025-07-27 23:03:58,651 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:04:31] 2025-07-27 23:03:58,652 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:04:31] 2025-07-27 23:03:58,652 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:04:31] 2025-07-27 23:03:58,659 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:04:31] 2025-07-27 23:03:58,663 | INFO     | sum of square deviations: 120605052.0
[2025-07-27 19:04:31] 2025-07-27 23:03:58,663 | INFO     | sum of deviations: -10315073526.0
[2025-07-27 19:04:31] 2025-07-27 23:03:58,663 | INFO     | mean x: 1753655108.0
[2025-07-27 19:04:31] 2025-07-27 23:03:58,663 | INFO     | mean y: 2472305.4109589043
[2025-07-27 19:04:31] 2025-07-27 23:03:58,663 | INFO     | -- intersect: 149988572209.96115
[2025-07-27 19:04:31] 2025-07-27 23:03:58,663 | INFO     | intersect: 149988572209.96115
[2025-07-27 19:04:31] 2025-07-27 23:03:58,664 | INFO     | chi2: 0.17153132742232935
[2025-07-27 19:04:31] 2025-07-27 23:03:58,664 | INFO     | -- intersect: 149988572209.96115
[2025-07-27 19:04:31] 2025-07-27 23:03:58,664 | INFO     | current memory leak: -85.53 B/s (using 73 data points, chi2=0.17)
[2025-07-27 19:04:31] 2025-07-27 23:03:58,664 | INFO     | could have reported an average CPU frequency of 2752 MHz (6 samples)
[2025-07-27 19:04:31] 2025-07-27 23:03:58,664 | INFO     | ..............................
[2025-07-27 19:04:31] 2025-07-27 23:03:58,665 | INFO     | . Timing measurements:
[2025-07-27 19:04:31] 2025-07-27 23:03:58,665 | INFO     | . get job = 0 s
[2025-07-27 19:04:31] 2025-07-27 23:03:58,665 | INFO     | . initial setup = 2 s
[2025-07-27 19:04:31] 2025-07-27 23:03:58,665 | INFO     | . payload setup = 6 s
[2025-07-27 19:04:31] 2025-07-27 23:03:58,665 | INFO     | . stage-in = 0 s
[2025-07-27 19:04:31] 2025-07-27 23:03:58,665 | INFO     | . payload execution = 4824 s
[2025-07-27 19:04:31] 2025-07-27 23:03:58,665 | INFO     | . stage-out = 1 s
[2025-07-27 19:04:31] 2025-07-27 23:03:58,665 | INFO     | . log creation = 0 s
[2025-07-27 19:04:31] 2025-07-27 23:03:58,665 | INFO     | ..............................
[2025-07-27 19:04:31] 2025-07-27 23:03:58,770 | INFO     | 
[2025-07-27 19:04:31] 2025-07-27 23:03:58,770 | INFO     | job summary report
[2025-07-27 19:04:31] 2025-07-27 23:03:58,770 | INFO     | --------------------------------------------------
[2025-07-27 19:04:31] 2025-07-27 23:03:58,770 | INFO     | PanDA job id: 6744771616
[2025-07-27 19:04:31] 2025-07-27 23:03:58,770 | INFO     | task id: 45743349
[2025-07-27 19:04:31] 2025-07-27 23:03:58,771 | INFO     | errors: (none)
[2025-07-27 19:04:31] 2025-07-27 23:03:58,771 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:04:31] 2025-07-27 23:03:58,771 | INFO     | pilot state: finished 
[2025-07-27 19:04:31] 2025-07-27 23:03:58,771 | INFO     | transexitcode: 0
[2025-07-27 19:04:31] 2025-07-27 23:03:58,771 | INFO     | exeerrorcode: 0
[2025-07-27 19:04:31] 2025-07-27 23:03:58,771 | INFO     | exeerrordiag: 
[2025-07-27 19:04:31] 2025-07-27 23:03:58,771 | INFO     | exitcode: 0
[2025-07-27 19:04:31] 2025-07-27 23:03:58,771 | INFO     | exitmsg: OK
[2025-07-27 19:04:31] 2025-07-27 23:03:58,772 | INFO     | cpuconsumptiontime: 50748 s
[2025-07-27 19:04:31] 2025-07-27 23:03:58,772 | INFO     | nevents: 400
[2025-07-27 19:04:31] 2025-07-27 23:03:58,772 | INFO     | neventsw: 0
[2025-07-27 19:04:31] 2025-07-27 23:03:58,772 | INFO     | pid: 4021062
[2025-07-27 19:04:31] 2025-07-27 23:03:58,772 | INFO     | pgrp: 4021062
[2025-07-27 19:04:31] 2025-07-27 23:03:58,775 | INFO     | corecount: 12
[2025-07-27 19:04:31] 2025-07-27 23:03:58,775 | INFO     | event service: False
[2025-07-27 19:04:31] 2025-07-27 23:03:58,775 | INFO     | sizes: {0: 2397466, 5: 2397728, 11: 2397784, 4835: 2423910, 4837: 2432964, 4844: 2433130}
[2025-07-27 19:04:31] 2025-07-27 23:03:58,775 | INFO     | --------------------------------------------------
[2025-07-27 19:04:31] 2025-07-27 23:03:58,775 | INFO     | 
[2025-07-27 19:04:31] 2025-07-27 23:03:58,776 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 19:04:31] 2025-07-27 23:03:58,801 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,802 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,802 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,802 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,803 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,804 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:04:31] 2025-07-27 23:03:58,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:04:31] 2025-07-27 23:03:58,804 | INFO     | job 6744771616 has completed (purged errors)
[2025-07-27 19:04:31] 2025-07-27 23:03:58,804 | INFO     | overall cleanup function is called
[2025-07-27 19:04:31] 2025-07-27 23:03:59,046 | INFO     | number of running child processes to parent process 4021062: 1
[2025-07-27 19:04:31] 2025-07-27 23:03:59,046 | INFO     | maximum number of monitored processes: 6
[2025-07-27 19:04:31] 2025-07-27 23:03:59,047 | INFO     | aborting job monitoring since job object (job id=6744771616) has expired
[2025-07-27 19:04:31] 2025-07-27 23:03:59,824 | INFO     | --- collectZombieJob: --- 10, [4021062]
[2025-07-27 19:04:31] 2025-07-27 23:03:59,826 | INFO     | zombie collector waiting for pid 4021062
[2025-07-27 19:04:31] 2025-07-27 23:03:59,826 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:04:31] 2025-07-27 23:03:59,826 | INFO     | collected zombie processes
[2025-07-27 19:04:31] 2025-07-27 23:03:59,826 | INFO     | will attempt to kill all subprocesses of pid=4021062
[2025-07-27 19:04:31] 2025-07-27 23:04:00,191 | INFO     | process IDs to be killed: [4021062] (in reverse order)
[2025-07-27 19:04:31] 2025-07-27 23:04:00,299 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:04:31] 2025-07-27 23:04:00,299 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:04:31] 2025-07-27 23:04:00,310 | INFO     | did not find any defunct processes belonging to 4021062
[2025-07-27 19:04:31] 2025-07-27 23:04:00,321 | INFO     | did not find any defunct processes belonging to 4021062
[2025-07-27 19:04:31] 2025-07-27 23:04:00,322 | INFO     | ready for new job
[2025-07-27 19:04:31] 2025-07-27 23:04:00,322 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:04:31] 2025-07-27 23:04:00,324 | INFO     | ***************************************
[2025-07-27 19:04:31] 2025-07-27 23:04:00,324 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:04:31] 2025-07-27 23:04:00,324 | INFO     | ***************************************
[2025-07-27 19:04:31] 2025-07-27 23:04:00,324 | INFO     | 
[2025-07-27 19:04:31] 2025-07-27 23:04:00,341 | INFO     | architecture information:
[2025-07-27 19:04:31] 2025-07-27 23:04:00,341 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:04:31] 2025-07-27 23:04:00,358 | INFO     | cat /etc/os-release:
[2025-07-27 19:04:31] NAME="CentOS Linux"
[2025-07-27 19:04:31] VERSION="7 (Core)"
[2025-07-27 19:04:31] ID="centos"
[2025-07-27 19:04:31] ID_LIKE="rhel fedora"
[2025-07-27 19:04:31] VERSION_ID="7"
[2025-07-27 19:04:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:04:31] ANSI_COLOR="0;31"
[2025-07-27 19:04:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:04:31] HOME_URL="https://www.centos.org/"
[2025-07-27 19:04:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:04:31] 
[2025-07-27 19:04:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:04:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:04:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:04:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:04:31] 
[2025-07-27 19:04:31] 2025-07-27 23:04:00,358 | INFO     | ***************************************
[2025-07-27 19:04:31] 2025-07-27 23:04:00,861 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 19:04:31] 2025-07-27 23:04:00,882 | INFO     | sufficient remaining disk space (58817773568 B)
[2025-07-27 19:04:31] 2025-07-27 23:04:00,882 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:04:31] 2025-07-27 23:04:00,882 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:04:31] 2025-07-27 23:04:00,882 | INFO     | update_server=False
[2025-07-27 19:04:31] 2025-07-27 23:04:00,883 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:04:31] 2025-07-27 23:04:00,883 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:04:31] 2025-07-27 23:04:00,883 | INFO     | aborting loop
[2025-07-27 19:04:31] 2025-07-27 23:04:01,040 | INFO     | all payload control threads have been joined
[2025-07-27 19:04:31] 2025-07-27 23:04:01,645 | INFO     | all data control threads have been joined
[2025-07-27 19:04:31] 2025-07-27 23:04:01,888 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:01,888 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:02,035 | INFO     | all job control threads have been joined
[2025-07-27 19:04:31] 2025-07-27 23:04:02,046 | INFO     | [payload] control thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:02,182 | INFO     | [job] validate thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:02,185 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:04:31] 2025-07-27 23:04:02,291 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:02,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:04:31] 2025-07-27 23:04:02,323 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:02,358 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:02,380 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:02,651 | INFO     | [data] control thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:02,713 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:03,041 | INFO     | [job] control thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:03,058 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:03,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:04:31] 2025-07-27 23:04:04,191 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:04,786 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:06,297 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:11,801 | INFO     | job.realtimelogging is not enabled
[2025-07-27 19:04:31] 2025-07-27 23:04:12,806 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:04:31] 2025-07-27 23:04:14,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140051438896960)>', '<ExcThread(monitor, started 140050947888896)>']
[2025-07-27 19:04:31] 2025-07-27 23:04:19,561 | INFO     | all workflow threads have been joined
[2025-07-27 19:04:31] 2025-07-27 23:04:19,562 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:04:31] 2025-07-27 23:04:19,562 | INFO     | traces error code: 0
[2025-07-27 19:04:31] 2025-07-27 23:04:19,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:04:31] 2025-07-27 23:04:31,013 | INFO     | PID=4014185 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:04:31] 2025-07-27 23:04:31,014 | INFO     | .. there are 13 such processes running
[2025-07-27 19:04:31] 2025-07-27 23:04:31,014 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:04:31] 2025-07-27 23:04:31,014 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:04:31] 2025-07-27 23:04:31,014 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:04:31] 2025-07-27 23:04:31,014 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:04:31] 2025-07-27 23:04:31,014 | INFO     | [monitor] control thread has ended
[2025-07-27 19:04:31] 2025-07-27 23:04:31,198 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:04:31] 2025-07-27 23:04:31,202 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:04:31] 2025-07-27 23:04:31,205 [wrapper] pilotpid: 4014185
[2025-07-27 19:04:31] 2025-07-27 23:04:31,209 [wrapper] Pilot exit status: 0
[2025-07-27 19:04:31] 2025-07-27 23:04:31,223 [wrapper] pandaids: 6744771616
[2025-07-27 19:04:31] 2025-07-27 23:04:31,290 [wrapper] cleanup supervisor_pilot   33172 4014186
[2025-07-27 19:04:31] 2025-07-27 23:04:31,294 [wrapper] Test setup, not cleaning
[2025-07-27 19:04:31] 2025-07-27 23:04:31,298 [wrapper] apfmon messages muted
[2025-07-27 19:04:31] 2025-07-27 23:04:31,301 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:04:31] 2025-07-27 23:04:31,305 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:04:31]  *** Error codes and diagnostics ***
[2025-07-27 19:04:31]     "exeErrorCode": 0,
[2025-07-27 19:04:31]     "exeErrorDiag": "",
[2025-07-27 19:04:31]     "pilotErrorCode": 0,
[2025-07-27 19:04:31]     "pilotErrorDiag": "",
[2025-07-27 19:04:31]  *** Listing of results directory ***
[2025-07-27 19:04:31] total 360364
[2025-07-27 19:04:31] -rwx------. 1 boincer umatlas     36292 Jul 24 11:22 runpilot2-wrapper.sh
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 11:23 queuedata.json
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 11:24 pilot3.tar.gz
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:04:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:42 run_atlas
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:42 job.xml
[2025-07-27 19:04:31] -rw-r--r--. 2 boincer umatlas 145674350 Jul 27 17:42 EVNT.45743347._000118.pool.root.1
[2025-07-27 19:04:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:42 start_atlas.sh
[2025-07-27 19:04:31] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:42 shared
[2025-07-27 19:04:31] -rw-r--r--. 2 boincer umatlas    542870 Jul 27 17:42 input.tar.gz
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:42 boinc_lockfile
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas      2559 Jul 27 17:42 pandaJob.out
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas    980117 Jul 27 17:42 agis_schedconf.cvmfs.json
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:42 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:04:31] drwx------. 4 boincer umatlas      4096 Jul 27 17:42 pilot3
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 19:01 init_data.xml
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas 217797479 Jul 27 19:03 HITS.45743349._002051.pool.root.1
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:03 boinc_task_state.xml
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas        95 Jul 27 19:03 pilot_heartbeat.json
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas      1034 Jul 27 19:03 memory_monitor_summary.json
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas    355927 Jul 27 19:03 log.45743349._002051.job.log.tgz.1
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas      7817 Jul 27 19:03 heartbeat.json
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:04 boinc_mmap_file
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:04 wrapper_checkpoint.txt
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas       823 Jul 27 19:04 pilotlog.txt
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas    478040 Jul 27 19:04 log.45743349._002051.job.log.1
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas       357 Jul 27 19:04 output.list
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:04 runtime_log
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas    849920 Jul 27 19:04 result.tar.gz
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 19:04 runtime_log.err
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas       656 Jul 27 19:04 RndLDmQxCz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhXMLDm5AYdan.diag
[2025-07-27 19:04:31] -rw-r--r--. 1 boincer umatlas     22551 Jul 27 19:04 stderr.txt
[2025-07-27 19:04:31] HITS file was successfully produced:
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas 217797479 Jul 27 19:03 shared/HITS.pool.root.1
[2025-07-27 19:04:31]  *** Contents of shared directory: ***
[2025-07-27 19:04:31] total 356344
[2025-07-27 19:04:31] -rw-r--r--. 2 boincer umatlas 145674350 Jul 27 17:42 ATLAS.root_0
[2025-07-27 19:04:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:42 start_atlas.sh
[2025-07-27 19:04:31] -rw-r--r--. 2 boincer umatlas    542870 Jul 27 17:42 input.tar.gz
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas 217797479 Jul 27 19:03 HITS.pool.root.1
[2025-07-27 19:04:31] -rw-------. 1 boincer umatlas    849920 Jul 27 19:04 result.tar.gz
19:04:33 (4010482): run_atlas exited; CPU time 50792.249692
19:04:33 (4010482): called boinc_finish(0)

</stderr_txt>
]]>

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