Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:04:37 (3437296): wrapper (7.7.26015): starting
13:04:37 (3437296): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 13:04:37] Arguments: --nthreads 12
[2025-07-27 13:04:37] Threads: 12
[2025-07-27 13:04:37] Checking for CVMFS
[2025-07-27 13:04:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:04:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:04:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:04:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:04:39] 2.11.5.0 6492 37600 234488 148822 0 537 30593782 45568001 13215 130560 0 341099508 99.785 217045569 26731 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-27 13:04:39] CVMFS is ok
[2025-07-27 13:04:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:04:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:04:39] Further information can be found at the LHC@home message board.
[2025-07-27 13:04:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:04:39] Checking for apptainer binary...
[2025-07-27 13:04:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:04:39] Running /usr/bin/apptainer --version
[2025-07-27 13:04:39] apptainer version 1.4.1-1.el9
[2025-07-27 13:04:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:04:40] wns0028.triumf.lcg
[2025-07-27 13:04:40] apptainer works
[2025-07-27 13:04:40] Set ATHENA_PROC_NUMBER=12
[2025-07-27 13:04:40] Set ATHENA_CORE_NUMBER=12
[2025-07-27 13:04:40] Starting ATLAS job with PandaID=6747566328
[2025-07-27 13:04:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 13:09:51]  *** The last 200 lines of the pilot log: ***
[2025-07-27 13:09:52] 2025-07-27 20:09:17,036 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:09:52] 2025-07-27 20:09:17,037 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:09:52] 2025-07-27 20:09:17,037 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | WARNING  | wrong length of table data, x=[1753646771.0], y=[2242.0] (must be same and length>=4)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | could have reported an average CPU frequency of 2373 MHz (4 samples)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | ..............................
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . Timing measurements:
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . get job = 0 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . initial setup = 4 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . payload setup = 15 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . stage-in = 0 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . payload execution = 65 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . stage-out = 2 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | . log creation = 0 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | ..............................
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747566328/pilotlog.txt
[2025-07-27 13:09:52] 2025-07-27 20:09:17,053 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-27 13:09:52] - Log from pilotlog.txt -
[2025-07-27 13:09:52] 2025-07-27 20:09:17,036 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6747566328/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,036 | INFO     | extracted standard info from prmon json
[2025-07-27 13:09:52] 2025-07-27 20:09:17,036 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 13:09:52] 2025-07-27 20:09:17,036 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:09:52] 2025-07-27 20:09:17,037 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:09:52] 2025-07-27 20:09:17,037 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | WARNING  | wrong length of table data, x=[1753646771.0], y=[2242.0] (must be same and length>=4)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | could have reported an average CPU frequency of 2373 MHz (4 samples)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | ..............................
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . Timing measurements:
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . get job = 0 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . initial setup = 4 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . payload setup = 15 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . stage-in = 0 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . payload execution = 65 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . stage-out = 2 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | . log creation = 0 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | ..............................
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747566328/pilotlog.txt
[2025-07-27 13:09:52] 2025-07-27 20:09:17,053 | WARNING  | 
[2025-07-27 13:09:52] [begin log extracts]
[2025-07-27 13:09:52] - Log from pilotlog.txt -
[2025-07-27 13:09:52] 2025-07-27 20:09:17,036 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6747566328/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,036 | INFO     | extracted standard info from prmon json
[2025-07-27 13:09:52] 2025-07-27 20:09:17,036 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 13:09:52] 2025-07-27 20:09:17,036 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:09:52] 2025-07-27 20:09:17,037 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:09:52] 2025-07-27 20:09:17,037 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | WARNING  | wrong length of table data, x=[1753646771.0], y=[2242.0] (must be same and length>=4)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | could have reported an average CPU frequency of 2373 MHz (4 samples)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | ..............................
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . Timing measurements:
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . get job = 0 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . initial setup = 4 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . payload setup = 15 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . stage-in = 0 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . payload execution = 65 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,038 | INFO     | . stage-out = 2 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | . log creation = 0 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | ..............................
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 13:09:52] 2025-07-27 20:09:17,039 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747566328/pilotlog.txt
[2025-07-27 13:09:52] [end log extracts]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,053 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,054 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-27 13:09:52] 2025-07-27 20:09:17,719 | INFO     | 
[2025-07-27 13:09:52] 2025-07-27 20:09:17,719 | INFO     | job summary report
[2025-07-27 13:09:52] 2025-07-27 20:09:17,719 | INFO     | --------------------------------------------------
[2025-07-27 13:09:52] 2025-07-27 20:09:17,719 | INFO     | PanDA job id: 6747566328
[2025-07-27 13:09:52] 2025-07-27 20:09:17,719 | INFO     | task id: 45743349
[2025-07-27 13:09:52] 2025-07-27 20:09:17,719 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-27 13:06:50,680 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-27 13:09:52] 2025-07-27 20:09:17,719 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 13:09:52] 2025-07-27 20:09:17,719 | INFO     | pilot state: failed 
[2025-07-27 13:09:52] 2025-07-27 20:09:17,719 | INFO     | transexitcode: 65
[2025-07-27 13:09:52] 2025-07-27 20:09:17,720 | INFO     | exeerrorcode: 65
[2025-07-27 13:09:52] 2025-07-27 20:09:17,720 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | exitcode: 65
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | cpuconsumptiontime: 18 s
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | nevents: 0
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | neventsw: 0
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | pid: 3447184
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | pgrp: 3447184
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | corecount: 12
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | event service: False
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | sizes: {0: 2397189, 1: 2397444, 11: 2397706, 12: 2397734, 84: 2420997, 88: 2425445, 218: 2425583}
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | --------------------------------------------------
[2025-07-27 13:09:52] 2025-07-27 20:09:17,731 | INFO     | 
[2025-07-27 13:09:52] 2025-07-27 20:09:17,732 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-27 13:09:52] 2025-07-27 20:09:17,783 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,783 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,783 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,783 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 13:09:52] 2025-07-27 20:09:17,784 | INFO     | job 6747566328 has completed (purged errors)
[2025-07-27 13:09:52] 2025-07-27 20:09:17,785 | INFO     | overall cleanup function is called
[2025-07-27 13:09:52] 2025-07-27 20:09:18,792 | INFO     | --- collectZombieJob: --- 10, [3447184]
[2025-07-27 13:09:52] 2025-07-27 20:09:18,792 | INFO     | zombie collector waiting for pid 3447184
[2025-07-27 13:09:52] 2025-07-27 20:09:18,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 13:09:52] 2025-07-27 20:09:18,792 | INFO     | collected zombie processes
[2025-07-27 13:09:52] 2025-07-27 20:09:18,792 | INFO     | will attempt to kill all subprocesses of pid=3447184
[2025-07-27 13:09:52] 2025-07-27 20:09:18,967 | INFO     | process IDs to be killed: [3447184] (in reverse order)
[2025-07-27 13:09:52] 2025-07-27 20:09:19,029 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 13:09:52] 2025-07-27 20:09:19,030 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 13:09:52] 2025-07-27 20:09:19,051 | INFO     | did not find any defunct processes belonging to 3447184
[2025-07-27 13:09:52] 2025-07-27 20:09:19,057 | INFO     | did not find any defunct processes belonging to 3447184
[2025-07-27 13:09:52] 2025-07-27 20:09:19,060 | INFO     | ready for new job
[2025-07-27 13:09:52] 2025-07-27 20:09:19,061 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 13:09:52] 2025-07-27 20:09:19,063 | INFO     | ***************************************
[2025-07-27 13:09:52] 2025-07-27 20:09:19,063 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 13:09:52] 2025-07-27 20:09:19,063 | INFO     | ***************************************
[2025-07-27 13:09:52] 2025-07-27 20:09:19,063 | INFO     | 
[2025-07-27 13:09:52] 2025-07-27 20:09:19,065 | INFO     | architecture information:
[2025-07-27 13:09:52] 2025-07-27 20:09:19,066 | INFO     | executing command: cat /etc/os-release
[2025-07-27 13:09:52] 2025-07-27 20:09:19,123 | INFO     | cat /etc/os-release:
[2025-07-27 13:09:52] NAME="CentOS Linux"
[2025-07-27 13:09:52] VERSION="7 (Core)"
[2025-07-27 13:09:52] ID="centos"
[2025-07-27 13:09:52] ID_LIKE="rhel fedora"
[2025-07-27 13:09:52] VERSION_ID="7"
[2025-07-27 13:09:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 13:09:52] ANSI_COLOR="0;31"
[2025-07-27 13:09:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 13:09:52] HOME_URL="https://www.centos.org/"
[2025-07-27 13:09:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 13:09:52] 
[2025-07-27 13:09:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 13:09:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 13:09:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 13:09:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 13:09:52] 
[2025-07-27 13:09:52] 2025-07-27 20:09:19,124 | INFO     | ***************************************
[2025-07-27 13:09:52] 2025-07-27 20:09:19,627 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-27 13:09:52] 2025-07-27 20:09:19,718 | INFO     | sufficient remaining disk space (2082100740096 B)
[2025-07-27 13:09:52] 2025-07-27 20:09:19,719 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 13:09:52] 2025-07-27 20:09:19,719 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 13:09:52] 2025-07-27 20:09:19,719 | INFO     | update_server=False
[2025-07-27 13:09:52] 2025-07-27 20:09:19,719 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 13:09:52] 2025-07-27 20:09:19,720 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 13:09:52] 2025-07-27 20:09:19,742 | INFO     | all data control threads have been joined
[2025-07-27 13:09:52] 2025-07-27 20:09:20,107 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:09:52] 2025-07-27 20:09:20,107 | INFO     | aborting loop
[2025-07-27 13:09:52] 2025-07-27 20:09:20,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 13:09:52] 2025-07-27 20:09:20,147 | INFO     | all payload control threads have been joined
[2025-07-27 13:09:52] 2025-07-27 20:09:20,714 | INFO     | all job control threads have been joined
[2025-07-27 13:09:52] 2025-07-27 20:09:20,729 | INFO     | [job] retrieve thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:20,748 | INFO     | [data] control thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:20,775 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:20,777 | INFO     | [payload] failed_post thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:21,113 | INFO     | [job] job monitor thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:21,153 | INFO     | [payload] control thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:21,181 | INFO     | [job] validate thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:21,230 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:21,252 | INFO     | [data] copytool_in thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:21,707 | INFO     | [payload] validate_post thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:21,721 | INFO     | [job] control thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:22,127 | INFO     | [data] copytool_out thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:22,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:22,183 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:22,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:09:52] 2025-07-27 20:09:23,369 | INFO     | [job] queue monitor thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:23,733 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 13:09:52] 2025-07-27 20:09:23,846 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139919220799296)>', '<ExcThread(monitor, started 139918667925248)>']
[2025-07-27 13:09:52] 2025-07-27 20:09:28,872 | INFO     | all workflow threads have been joined
[2025-07-27 13:09:52] 2025-07-27 20:09:28,872 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 13:09:52] 2025-07-27 20:09:28,873 | INFO     | traces error code: 0
[2025-07-27 13:09:52] 2025-07-27 20:09:28,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 13:09:52] 2025-07-27 20:09:50,340 | INFO     | PID=3440878 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 13:09:52] 2025-07-27 20:09:50,341 | INFO     | .. there are 14 such processes running
[2025-07-27 13:09:52] 2025-07-27 20:09:50,341 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 13:09:52] 2025-07-27 20:09:50,342 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 13:09:52] 2025-07-27 20:09:50,342 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 13:09:52] 2025-07-27 20:09:50,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 13:09:52] 2025-07-27 20:09:50,342 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 13:09:52] 2025-07-27 20:09:50,342 | INFO     | [monitor] control thread has ended
[2025-07-27 13:09:52] 2025-07-27 20:09:51,145 [wrapper] ==== pilot stdout END ====
[2025-07-27 13:09:52] 2025-07-27 20:09:51,186 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 13:09:52] 2025-07-27 20:09:51,238 [wrapper] pilotpid: 3440878
[2025-07-27 13:09:52] 2025-07-27 20:09:51,296 [wrapper] Pilot exit status: 0
[2025-07-27 13:09:52] 2025-07-27 20:09:51,458 [wrapper] pandaids: 6747566328
[2025-07-27 13:09:52] 2025-07-27 20:09:51,787 [wrapper] cleanup supervisor_pilot 3440884 3440879
[2025-07-27 13:09:52] 2025-07-27 20:09:51,817 [wrapper] Test setup, not cleaning
[2025-07-27 13:09:52] 2025-07-27 20:09:51,855 [wrapper] apfmon messages muted
[2025-07-27 13:09:52] 2025-07-27 20:09:51,864 [wrapper] ==== wrapper stdout END ====
[2025-07-27 13:09:52] 2025-07-27 20:09:51,881 [wrapper] ==== wrapper stderr END ====
[2025-07-27 13:09:52]  *** Error codes and diagnostics ***
[2025-07-27 13:09:52]     "exeErrorCode": 65,
[2025-07-27 13:09:52]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-27 13:09:52]     "pilotErrorCode": 1305,
[2025-07-27 13:09:52]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-27 13:09:52]  *** Listing of results directory ***
[2025-07-27 13:09:52] total 142760
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc      5112 Jul 27 10:28 queuedata.json
[2025-07-27 13:09:52] -rwx------. 1 boinc boinc     36292 Jul 27 10:29 runpilot2-wrapper.sh
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc    530466 Jul 27 10:29 pilot3.tar.gz
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc       100 Jul 27 13:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 13:09:52] -rwxr-xr-x. 1 boinc boinc      7986 Jul 27 13:04 run_atlas
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc       105 Jul 27 13:04 job.xml
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc      6595 Jul 27 13:04 init_data.xml
[2025-07-27 13:09:52] -rw-r--r--. 2 boinc boinc 142104776 Jul 27 13:04 EVNT.45743347._002227.pool.root.1
[2025-07-27 13:09:52] -rw-r--r--. 2 boinc boinc     15095 Jul 27 13:04 start_atlas.sh
[2025-07-27 13:09:52] drwxrwx--x. 2 boinc boinc      4096 Jul 27 13:04 shared
[2025-07-27 13:09:52] -rw-r--r--. 2 boinc boinc    542876 Jul 27 13:04 input.tar.gz
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc         0 Jul 27 13:04 boinc_lockfile
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc      2560 Jul 27 13:04 pandaJob.out
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc    980125 Jul 27 13:05 agis_schedconf.cvmfs.json
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc   1593052 Jul 27 13:05 agis_ddmendpoints.agis.ALL.json
[2025-07-27 13:09:52] drwx------. 4 boinc boinc      4096 Jul 27 13:05 pilot3
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc       524 Jul 27 13:06 boinc_task_state.xml
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc       946 Jul 27 13:06 memory_monitor_summary.json
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc     21775 Jul 27 13:07 log.45743349._052889.job.log.tgz.1
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc      8383 Jul 27 13:09 heartbeat.json
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc      8192 Jul 27 13:09 boinc_mmap_file
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc        22 Jul 27 13:09 wrapper_checkpoint.txt
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc        95 Jul 27 13:09 pilot_heartbeat.json
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc       893 Jul 27 13:09 pilotlog.txt
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc     80340 Jul 27 13:09 log.45743349._052889.job.log.1
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc       188 Jul 27 13:09 output.list
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc       620 Jul 27 13:09 runtime_log
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc    122880 Jul 27 13:09 result.tar.gz
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc      8485 Jul 27 13:09 runtime_log.err
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc       643 Jul 27 13:09 9oELDmiMK07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4xVLDmPig9tm.diag
[2025-07-27 13:09:52] -rw-r--r--. 1 boinc boinc     21775 Jul 27 13:09 stderr.txt
[2025-07-27 13:09:52] No HITS result produced
[2025-07-27 13:09:52]  *** Contents of shared directory: ***
[2025-07-27 13:09:52] total 139444
[2025-07-27 13:09:52] -rw-r--r--. 2 boinc boinc 142104776 Jul 27 13:04 ATLAS.root_0
[2025-07-27 13:09:52] -rw-r--r--. 2 boinc boinc     15095 Jul 27 13:04 start_atlas.sh
[2025-07-27 13:09:52] -rw-r--r--. 2 boinc boinc    542876 Jul 27 13:04 input.tar.gz
[2025-07-27 13:09:52] -rw-------. 1 boinc boinc    122880 Jul 27 13:09 result.tar.gz
13:09:53 (3437296): run_atlas exited; CPU time 26.655000
13:09:53 (3437296): called boinc_finish(0)

</stderr_txt>
]]>

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