Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:39:25 (2487180): wrapper (7.7.26015): starting
15:39:25 (2487180): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:39:25] Arguments: --nthreads 8
[2025-07-27 15:39:25] Threads: 8
[2025-07-27 15:39:25] Checking for CVMFS
[2025-07-27 15:39:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:39:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:39:25] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:39:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:39:25] 2.13.1.0 116762 8824 202888 148822 3 188 34936146 40960001 12410 16776704 0 123102862 99.999 339676 39074 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 15:39:25] CVMFS is ok
[2025-07-27 15:39:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:39:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:39:25] Further information can be found at the LHC@home message board.
[2025-07-27 15:39:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:39:25] Checking for apptainer binary...
[2025-07-27 15:39:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:39:25] Running /usr/bin/apptainer --version
[2025-07-27 15:39:25] apptainer version 1.4.1-1.el9
[2025-07-27 15:39:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:39:25] c-208-39.aglt2.org
[2025-07-27 15:39:25] apptainer works
[2025-07-27 15:39:25] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:39:25] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:39:25] Starting ATLAS job with PandaID=6747413249
[2025-07-27 15:39:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:35:16]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:35:16]  lfn=log.45743349._050023.job.log.tgz.1
[2025-07-27 16:35:16]  mtime=0
[2025-07-27 16:35:16]  protocol_id=None
[2025-07-27 16:35:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 16:35:16]  replicas=None
[2025-07-27 16:35:16]  scope=mc23_13p6TeV
[2025-07-27 16:35:16]  status=None
[2025-07-27 16:35:16]  status_code=0
[2025-07-27 16:35:16]  storage_token=
[2025-07-27 16:35:16]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747413249/log.45743349._050023.job.log.tgz.1
[2025-07-27 16:35:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/34/log.45743349._050023.job.log.tgz.1
[2025-07-27 16:35:16]  workdir=None
[2025-07-27 16:35:16] ]
[2025-07-27 16:35:16] 2025-07-27 20:34:27,655 | INFO     | transferring file log.45743349._050023.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747413249/log.45743349._050023.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 16:35:16] 2025-07-27 20:34:27,655 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747413249/log.45743349._050023.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._050023.job
[2025-07-27 16:35:16] 2025-07-27 20:34:27,675 | INFO     | adding to output.list: log.45743349._050023.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/34/log.45743349._050023.job.log.tg
[2025-07-27 16:35:16] 2025-07-27 20:34:27,676 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:35:16] 2025-07-27 20:34:27,676 | INFO     | summary of transferred files:
[2025-07-27 16:35:16] 2025-07-27 20:34:27,676 | INFO     |  -- lfn=log.45743349._050023.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:35:16] 2025-07-27 20:34:27,676 | INFO     | stage-out finished correctly
[2025-07-27 16:35:16] 2025-07-27 20:34:29,657 | INFO     | monitor loop #241: job 0:6747413249 is in state 'finished'
[2025-07-27 16:35:16] 2025-07-27 20:34:29,658 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:35:16] 2025-07-27 20:34:30,324 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:35:16] 2025-07-27 20:34:31,360 | INFO     | job 6747413249 has state=finished
[2025-07-27 16:35:16] 2025-07-27 20:34:31,361 | INFO     | preparing for final server update for job 6747413249 in state='finished'
[2025-07-27 16:35:16] 2025-07-27 20:34:31,361 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:35:16] 2025-07-27 20:34:31,361 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:35:16] 2025-07-27 20:34:31,361 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:35:16] 2025-07-27 20:34:31,362 | INFO     | job 6747413249 has finished - writing final server update
[2025-07-27 16:35:16] 2025-07-27 20:34:31,362 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:35:16] 2025-07-27 20:34:31,363 | INFO     | executing command: lscpu
[2025-07-27 16:35:16] 2025-07-27 20:34:31,422 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:35:16] 2025-07-27 20:34:32,161 | INFO     | monitor loop #242: job 0:6747413249 is in state 'finished'
[2025-07-27 16:35:16] 2025-07-27 20:34:32,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:35:16] 2025-07-27 20:34:34,664 | INFO     | monitor loop #243: job 0:6747413249 is in state 'finished'
[2025-07-27 16:35:16] 2025-07-27 20:34:34,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:35:16] 2025-07-27 20:34:35,084 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 16:35:16] 2025-07-27 20:34:35,089 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3748.3484453125016
[2025-07-27 16:35:16] 2025-07-27 20:34:35,102 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747413249/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:35:16] 2025-07-27 20:34:35,103 | INFO     | extracted standard info from prmon json
[2025-07-27 16:35:16] 2025-07-27 20:34:35,103 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:35:16] 2025-07-27 20:34:35,103 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:35:16] 2025-07-27 20:34:35,103 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:35:16] 2025-07-27 20:34:35,103 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:35:16] 2025-07-27 20:34:35,104 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:35:16] 2025-07-27 20:34:35,104 | INFO     | sum of square deviations: 32179208.0
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | sum of deviations: -371151877.00000006
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | mean x: 1753646908.0
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | mean y: 2535180.9787234045
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | -- intersect: 20228929239.51013
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | intersect: 20228929239.51013
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | chi2: 0.0009013909055548585
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | -- intersect: 20228929239.51013
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | current memory leak: -11.53 B/s (using 47 data points, chi2=0.00)
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | could have reported an average CPU frequency of 3763 MHz (5 samples)
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | ..............................
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | . Timing measurements:
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | . get job = 0 s
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | . initial setup = 2 s
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | . payload setup = 5 s
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | . stage-in = 0 s
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | . payload execution = 3268 s
[2025-07-27 16:35:16] 2025-07-27 20:34:35,105 | INFO     | . stage-out = 0 s
[2025-07-27 16:35:16] 2025-07-27 20:34:35,106 | INFO     | . log creation = 0 s
[2025-07-27 16:35:16] 2025-07-27 20:34:35,106 | INFO     | ..............................
[2025-07-27 16:35:16] 2025-07-27 20:34:35,164 | INFO     | 
[2025-07-27 16:35:16] 2025-07-27 20:34:35,165 | INFO     | job summary report
[2025-07-27 16:35:16] 2025-07-27 20:34:35,165 | INFO     | --------------------------------------------------
[2025-07-27 16:35:16] 2025-07-27 20:34:35,165 | INFO     | PanDA job id: 6747413249
[2025-07-27 16:35:16] 2025-07-27 20:34:35,165 | INFO     | task id: 45743349
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | errors: (none)
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | pilot state: finished 
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | transexitcode: 0
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | exeerrorcode: 0
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | exeerrordiag: 
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | exitcode: 0
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | exitmsg: OK
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | cpuconsumptiontime: 24291 s
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | nevents: 400
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | neventsw: 0
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | pid: 2511775
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | pgrp: 2511775
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | corecount: 8
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | event service: False
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | sizes: {0: 2397475, 4: 2397737, 11: 2397765, 3277: 2423317, 3278: 2432315, 3280: 2432371, 3285: 2432725}
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | --------------------------------------------------
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | 
[2025-07-27 16:35:16] 2025-07-27 20:34:35,166 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 16:35:16] 2025-07-27 20:34:35,186 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | job 6747413249 has completed (purged errors)
[2025-07-27 16:35:16] 2025-07-27 20:34:35,187 | INFO     | overall cleanup function is called
[2025-07-27 16:35:16] 2025-07-27 20:34:36,192 | INFO     | --- collectZombieJob: --- 10, [2511775]
[2025-07-27 16:35:16] 2025-07-27 20:34:36,192 | INFO     | zombie collector waiting for pid 2511775
[2025-07-27 16:35:16] 2025-07-27 20:34:36,192 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:35:16] 2025-07-27 20:34:36,192 | INFO     | collected zombie processes
[2025-07-27 16:35:16] 2025-07-27 20:34:36,192 | INFO     | will attempt to kill all subprocesses of pid=2511775
[2025-07-27 16:35:16] 2025-07-27 20:34:36,547 | INFO     | process IDs to be killed: [2511775] (in reverse order)
[2025-07-27 16:35:16] 2025-07-27 20:34:36,670 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:35:16] 2025-07-27 20:34:36,670 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:35:16] 2025-07-27 20:34:36,688 | INFO     | did not find any defunct processes belonging to 2511775
[2025-07-27 16:35:16] 2025-07-27 20:34:36,702 | INFO     | did not find any defunct processes belonging to 2511775
[2025-07-27 16:35:16] 2025-07-27 20:34:36,703 | INFO     | ready for new job
[2025-07-27 16:35:16] 2025-07-27 20:34:36,703 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:35:16] 2025-07-27 20:34:36,704 | INFO     | ***************************************
[2025-07-27 16:35:16] 2025-07-27 20:34:36,704 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:35:16] 2025-07-27 20:34:36,704 | INFO     | ***************************************
[2025-07-27 16:35:16] 2025-07-27 20:34:36,704 | INFO     | 
[2025-07-27 16:35:16] 2025-07-27 20:34:36,709 | INFO     | architecture information:
[2025-07-27 16:35:16] 2025-07-27 20:34:36,709 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:35:16] 2025-07-27 20:34:36,725 | INFO     | cat /etc/os-release:
[2025-07-27 16:35:16] NAME="CentOS Linux"
[2025-07-27 16:35:16] VERSION="7 (Core)"
[2025-07-27 16:35:16] ID="centos"
[2025-07-27 16:35:16] ID_LIKE="rhel fedora"
[2025-07-27 16:35:16] VERSION_ID="7"
[2025-07-27 16:35:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:35:16] ANSI_COLOR="0;31"
[2025-07-27 16:35:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:35:16] HOME_URL="https://www.centos.org/"
[2025-07-27 16:35:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:35:16] 
[2025-07-27 16:35:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:35:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:35:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:35:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:35:16] 
[2025-07-27 16:35:16] 2025-07-27 20:34:36,725 | INFO     | ***************************************
[2025-07-27 16:35:16] 2025-07-27 20:34:37,226 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 16:35:16] 2025-07-27 20:34:37,243 | INFO     | sufficient remaining disk space (165445369856 B)
[2025-07-27 16:35:16] 2025-07-27 20:34:37,243 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:35:16] 2025-07-27 20:34:37,243 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:35:16] 2025-07-27 20:34:37,243 | INFO     | update_server=False
[2025-07-27 16:35:16] 2025-07-27 20:34:37,243 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:35:16] 2025-07-27 20:34:37,244 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:35:16] 2025-07-27 20:34:38,075 | INFO     | all data control threads have been joined
[2025-07-27 16:35:16] 2025-07-27 20:34:38,173 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:35:16] 2025-07-27 20:34:38,173 | INFO     | aborting loop
[2025-07-27 16:35:16] 2025-07-27 20:34:38,244 | INFO     | all job control threads have been joined
[2025-07-27 16:35:16] 2025-07-27 20:34:38,245 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:38,246 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:35:16] 2025-07-27 20:34:38,249 | INFO     | all payload control threads have been joined
[2025-07-27 16:35:16] 2025-07-27 20:34:38,494 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:38,619 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:38,917 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:38,921 | INFO     | [job] validate thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:39,013 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:39,080 | INFO     | [data] control thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:39,178 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:39,249 | INFO     | [job] control thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:39,254 | INFO     | [payload] control thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:39,268 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:39,376 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:40,177 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:35:16] 2025-07-27 20:34:40,252 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:41,182 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:41,250 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:47,848 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:35:16] 2025-07-27 20:34:48,854 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:35:16] 2025-07-27 20:34:50,243 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668887832384)>', '<ExcThread(monitor, started 139668536403712)>']
[2025-07-27 16:35:16] 2025-07-27 20:34:55,268 | INFO     | all workflow threads have been joined
[2025-07-27 16:35:16] 2025-07-27 20:34:55,269 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:35:16] 2025-07-27 20:34:55,269 | INFO     | traces error code: 0
[2025-07-27 16:35:16] 2025-07-27 20:34:55,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:35:16] 2025-07-27 20:35:07,871 | INFO     | PID=2494114 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 16:35:16] 2025-07-27 20:35:07,871 | INFO     | .. there are 16 such processes running
[2025-07-27 16:35:16] 2025-07-27 20:35:07,872 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:35:16] 2025-07-27 20:35:07,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:35:16] 2025-07-27 20:35:07,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:35:16] 2025-07-27 20:35:07,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:35:16] 2025-07-27 20:35:07,872 | INFO     | [monitor] control thread has ended
[2025-07-27 16:35:16] 2025-07-27 20:35:07,967 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:35:16] 2025-07-27 20:35:07,969 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:35:16] 2025-07-27 20:35:07,973 [wrapper] pilotpid: 2494114
[2025-07-27 16:35:16] 2025-07-27 20:35:07,975 [wrapper] Pilot exit status: 0
[2025-07-27 16:35:16] 2025-07-27 20:35:07,987 [wrapper] pandaids: 6747413249
[2025-07-27 16:35:16] 2025-07-27 20:35:08,071 [wrapper] cleanup supervisor_pilot 2734571 2494115
[2025-07-27 16:35:16] 2025-07-27 20:35:08,075 [wrapper] Test setup, not cleaning
[2025-07-27 16:35:16] 2025-07-27 20:35:08,078 [wrapper] apfmon messages muted
[2025-07-27 16:35:16] 2025-07-27 20:35:08,081 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:35:16] 2025-07-27 20:35:08,084 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:35:16]  *** Error codes and diagnostics ***
[2025-07-27 16:35:16]     "exeErrorCode": 0,
[2025-07-27 16:35:16]     "exeErrorDiag": "",
[2025-07-27 16:35:16]     "pilotErrorCode": 0,
[2025-07-27 16:35:16]     "pilotErrorDiag": "",
[2025-07-27 16:35:16]  *** Listing of results directory ***
[2025-07-27 16:35:16] total 347296
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 16:35:16] -rwx------. 1 boincer umatlas     36292 Jul 27 10:28 runpilot2-wrapper.sh
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:28 queuedata.json
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:35:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:39 run_atlas
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:39 job.xml
[2025-07-27 16:35:16] -rw-r--r--. 2 boincer umatlas 145827427 Jul 27 15:39 EVNT.45743347._002781.pool.root.1
[2025-07-27 16:35:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:39 start_atlas.sh
[2025-07-27 16:35:16] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:39 shared
[2025-07-27 16:35:16] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 15:39 input.tar.gz
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:39 boinc_lockfile
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 15:39 pandaJob.out
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas    980125 Jul 27 15:39 agis_schedconf.cvmfs.json
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:39 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:35:16] drwx------. 4 boincer umatlas      4096 Jul 27 15:39 pilot3
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas      7174 Jul 27 16:30 init_data.xml
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas 204666152 Jul 27 16:34 HITS.45743349._050023.pool.root.1
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas       529 Jul 27 16:34 boinc_task_state.xml
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas      1028 Jul 27 16:34 memory_monitor_summary.json
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas    290851 Jul 27 16:34 log.45743349._050023.job.log.tgz.1
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas      7760 Jul 27 16:34 heartbeat.json
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas       823 Jul 27 16:35 pilotlog.txt
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas        95 Jul 27 16:35 pilot_heartbeat.json
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas    338589 Jul 27 16:35 log.45743349._050023.job.log.1
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas       357 Jul 27 16:35 output.list
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas       620 Jul 27 16:35 runtime_log
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas    645120 Jul 27 16:35 result.tar.gz
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 16:35 runtime_log.err
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas       651 Jul 27 16:35 lcGNDmEXH07n9Rq4apOajLDm4fhM0noT9bVof3QYDmHg2KDmOZO3Zn.diag
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas        27 Jul 27 16:35 wrapper_checkpoint.txt
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 16:35 boinc_mmap_file
[2025-07-27 16:35:16] -rw-r--r--. 1 boincer umatlas     21660 Jul 27 16:35 stderr.txt
[2025-07-27 16:35:16] HITS file was successfully produced:
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas 204666152 Jul 27 16:34 shared/HITS.pool.root.1
[2025-07-27 16:35:16]  *** Contents of shared directory: ***
[2025-07-27 16:35:16] total 343472
[2025-07-27 16:35:16] -rw-r--r--. 2 boincer umatlas 145827427 Jul 27 15:39 ATLAS.root_0
[2025-07-27 16:35:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:39 start_atlas.sh
[2025-07-27 16:35:16] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 15:39 input.tar.gz
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas 204666152 Jul 27 16:34 HITS.pool.root.1
[2025-07-27 16:35:16] -rw-------. 1 boincer umatlas    645120 Jul 27 16:35 result.tar.gz
16:35:18 (2487180): run_atlas exited; CPU time 24368.299653
16:35:18 (2487180): called boinc_finish(0)

</stderr_txt>
]]>

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