Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:36:03 (2439014): wrapper (7.7.26015): starting
15:36:03 (2439014): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:36:03] Arguments: --nthreads 8
[2025-07-27 15:36:03] Threads: 8
[2025-07-27 15:36:03] Checking for CVMFS
[2025-07-27 15:36:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:36:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:36:03] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:36:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:36:03] 2.13.1.0 116762 8821 203812 148822 2 188 34936146 40960001 12916 16776704 0 122966272 99.999 339675 39074 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 15:36:03] CVMFS is ok
[2025-07-27 15:36:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:36:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:36:03] Further information can be found at the LHC@home message board.
[2025-07-27 15:36:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:36:03] Checking for apptainer binary...
[2025-07-27 15:36:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:36:03] Running /usr/bin/apptainer --version
[2025-07-27 15:36:03] apptainer version 1.4.1-1.el9
[2025-07-27 15:36:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:36:03] c-208-39.aglt2.org
[2025-07-27 15:36:03] apptainer works
[2025-07-27 15:36:04] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:36:04] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:36:04] Starting ATLAS job with PandaID=6747413219
[2025-07-27 15:36:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:31:00]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:31:00]  mtime=0
[2025-07-27 16:31:00]  protocol_id=None
[2025-07-27 16:31:00]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 16:31:00]  replicas=None
[2025-07-27 16:31:00]  scope=mc23_13p6TeV
[2025-07-27 16:31:00]  status=None
[2025-07-27 16:31:00]  status_code=0
[2025-07-27 16:31:00]  storage_token=
[2025-07-27 16:31:00]  surl=/tmp/boinchome/slots/9/PanDA_Pilot-6747413219/log.45743349._049993.job.log.tgz.1
[2025-07-27 16:31:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/49/log.45743349._049993.job.log.tgz.1
[2025-07-27 16:31:00]  workdir=None
[2025-07-27 16:31:00] ]
[2025-07-27 16:31:00] 2025-07-27 20:30:21,076 | INFO     | transferring file log.45743349._049993.job.log.tgz.1 from /tmp/boinchome/slots/9/PanDA_Pilot-6747413219/log.45743349._049993.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 16:31:00] 2025-07-27 20:30:21,076 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/9/PanDA_Pilot-6747413219/log.45743349._049993.job.log.tgz.1 /tmp/boinchome/slots/9/log.45743349._049993.job
[2025-07-27 16:31:00] 2025-07-27 20:30:21,096 | INFO     | adding to output.list: log.45743349._049993.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/49/log.45743349._049993.job.log.tg
[2025-07-27 16:31:00] 2025-07-27 20:30:21,096 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:31:00] 2025-07-27 20:30:21,097 | INFO     | summary of transferred files:
[2025-07-27 16:31:00] 2025-07-27 20:30:21,097 | INFO     |  -- lfn=log.45743349._049993.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:31:00] 2025-07-27 20:30:21,097 | INFO     | stage-out finished correctly
[2025-07-27 16:31:00] 2025-07-27 20:30:21,424 | WARNING  | process 2451144 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 16:31:00] 2025-07-27 20:30:21,424 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6747413219/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:31:00] 2025-07-27 20:30:21,782 | INFO     | number of running child processes to parent process 2451144: 1
[2025-07-27 16:31:00] 2025-07-27 20:30:21,782 | INFO     | maximum number of monitored processes: 6
[2025-07-27 16:31:00] 2025-07-27 20:30:22,274 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:31:00] 2025-07-27 20:30:24,177 | INFO     | job 6747413219 has state=finished
[2025-07-27 16:31:00] 2025-07-27 20:30:24,178 | INFO     | preparing for final server update for job 6747413219 in state='finished'
[2025-07-27 16:31:00] 2025-07-27 20:30:24,178 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:31:00] 2025-07-27 20:30:24,178 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:31:00] 2025-07-27 20:30:24,178 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:31:00] 2025-07-27 20:30:24,178 | INFO     | job 6747413219 has finished - writing final server update
[2025-07-27 16:31:00] 2025-07-27 20:30:24,179 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:31:00] 2025-07-27 20:30:24,179 | INFO     | executing command: lscpu
[2025-07-27 16:31:00] 2025-07-27 20:30:24,238 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:31:00] 2025-07-27 20:30:24,286 | INFO     | monitor loop #237: job 0:6747413219 is in state 'finished'
[2025-07-27 16:31:00] 2025-07-27 20:30:24,286 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:31:00] 2025-07-27 20:30:26,789 | INFO     | monitor loop #238: job 0:6747413219 is in state 'finished'
[2025-07-27 16:31:00] 2025-07-27 20:30:26,789 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:31:00] 2025-07-27 20:30:27,863 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 16:31:00] 2025-07-27 20:30:27,868 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3744.237554687501
[2025-07-27 16:31:00] 2025-07-27 20:30:27,881 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6747413219/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:31:00] 2025-07-27 20:30:27,881 | INFO     | extracted standard info from prmon json
[2025-07-27 16:31:00] 2025-07-27 20:30:27,881 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:31:00] 2025-07-27 20:30:27,881 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:31:00] 2025-07-27 20:30:27,882 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:31:00] 2025-07-27 20:30:27,882 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:31:00] 2025-07-27 20:30:27,882 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | sum of square deviations: 30168007.5
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | sum of deviations: -338305054.49999994
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | mean x: 1753646673.5
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | mean y: 2538332.717391304
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | -- intersect: 19667991327.98601
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | intersect: 19667991327.98601
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | chi2: 0.0006539200299396028
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | -- intersect: 19667991327.98601
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | current memory leak: -11.21 B/s (using 46 data points, chi2=0.00)
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | could have reported an average CPU frequency of 3753 MHz (5 samples)
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | ..............................
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | . Timing measurements:
[2025-07-27 16:31:00] 2025-07-27 20:30:27,883 | INFO     | . get job = 0 s
[2025-07-27 16:31:00] 2025-07-27 20:30:27,884 | INFO     | . initial setup = 2 s
[2025-07-27 16:31:00] 2025-07-27 20:30:27,884 | INFO     | . payload setup = 5 s
[2025-07-27 16:31:00] 2025-07-27 20:30:27,884 | INFO     | . stage-in = 0 s
[2025-07-27 16:31:00] 2025-07-27 20:30:27,884 | INFO     | . payload execution = 3224 s
[2025-07-27 16:31:00] 2025-07-27 20:30:27,884 | INFO     | . stage-out = 0 s
[2025-07-27 16:31:00] 2025-07-27 20:30:27,884 | INFO     | . log creation = 0 s
[2025-07-27 16:31:00] 2025-07-27 20:30:27,884 | INFO     | ..............................
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | 
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | job summary report
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | --------------------------------------------------
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | PanDA job id: 6747413219
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | task id: 45743349
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | errors: (none)
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | pilot state: finished 
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | transexitcode: 0
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | exeerrorcode: 0
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | exeerrordiag: 
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | exitcode: 0
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | exitmsg: OK
[2025-07-27 16:31:00] 2025-07-27 20:30:28,294 | INFO     | cpuconsumptiontime: 23413 s
[2025-07-27 16:31:00] 2025-07-27 20:30:28,295 | INFO     | nevents: 400
[2025-07-27 16:31:00] 2025-07-27 20:30:28,295 | INFO     | neventsw: 0
[2025-07-27 16:31:00] 2025-07-27 20:30:28,295 | INFO     | pid: 2451144
[2025-07-27 16:31:00] 2025-07-27 20:30:28,295 | INFO     | pgrp: 2451144
[2025-07-27 16:31:00] 2025-07-27 20:30:28,295 | INFO     | corecount: 8
[2025-07-27 16:31:00] 2025-07-27 20:30:28,295 | INFO     | event service: False
[2025-07-27 16:31:00] 2025-07-27 20:30:28,295 | INFO     | sizes: {0: 2397475, 4: 2397737, 11: 2397765, 3234: 2423317, 3235: 2432315, 3236: 2432371, 3242: 2432725}
[2025-07-27 16:31:00] 2025-07-27 20:30:28,295 | INFO     | --------------------------------------------------
[2025-07-27 16:31:00] 2025-07-27 20:30:28,295 | INFO     | 
[2025-07-27 16:31:00] 2025-07-27 20:30:28,295 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-07-27 16:31:00] 2025-07-27 20:30:28,312 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,312 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,312 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,312 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | job 6747413219 has completed (purged errors)
[2025-07-27 16:31:00] 2025-07-27 20:30:28,313 | INFO     | overall cleanup function is called
[2025-07-27 16:31:00] 2025-07-27 20:30:29,317 | INFO     | --- collectZombieJob: --- 10, [2451144]
[2025-07-27 16:31:00] 2025-07-27 20:30:29,317 | INFO     | zombie collector waiting for pid 2451144
[2025-07-27 16:31:00] 2025-07-27 20:30:29,317 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:31:00] 2025-07-27 20:30:29,318 | INFO     | collected zombie processes
[2025-07-27 16:31:00] 2025-07-27 20:30:29,318 | INFO     | will attempt to kill all subprocesses of pid=2451144
[2025-07-27 16:31:00] 2025-07-27 20:30:29,672 | INFO     | process IDs to be killed: [2451144] (in reverse order)
[2025-07-27 16:31:00] 2025-07-27 20:30:29,795 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:31:00] 2025-07-27 20:30:29,796 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:31:00] 2025-07-27 20:30:29,811 | INFO     | did not find any defunct processes belonging to 2451144
[2025-07-27 16:31:00] 2025-07-27 20:30:29,826 | INFO     | did not find any defunct processes belonging to 2451144
[2025-07-27 16:31:00] 2025-07-27 20:30:29,826 | INFO     | ready for new job
[2025-07-27 16:31:00] 2025-07-27 20:30:29,826 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:31:00] 2025-07-27 20:30:29,828 | INFO     | ***************************************
[2025-07-27 16:31:00] 2025-07-27 20:30:29,828 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:31:00] 2025-07-27 20:30:29,828 | INFO     | ***************************************
[2025-07-27 16:31:00] 2025-07-27 20:30:29,828 | INFO     | 
[2025-07-27 16:31:00] 2025-07-27 20:30:29,832 | INFO     | architecture information:
[2025-07-27 16:31:00] 2025-07-27 20:30:29,833 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:31:00] 2025-07-27 20:30:29,848 | INFO     | cat /etc/os-release:
[2025-07-27 16:31:00] NAME="CentOS Linux"
[2025-07-27 16:31:00] VERSION="7 (Core)"
[2025-07-27 16:31:00] ID="centos"
[2025-07-27 16:31:00] ID_LIKE="rhel fedora"
[2025-07-27 16:31:00] VERSION_ID="7"
[2025-07-27 16:31:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:31:00] ANSI_COLOR="0;31"
[2025-07-27 16:31:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:31:00] HOME_URL="https://www.centos.org/"
[2025-07-27 16:31:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:31:00] 
[2025-07-27 16:31:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:31:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:31:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:31:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:31:00] 
[2025-07-27 16:31:00] 2025-07-27 20:30:29,848 | INFO     | ***************************************
[2025-07-27 16:31:00] 2025-07-27 20:30:30,349 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-07-27 16:31:00] 2025-07-27 20:30:30,364 | INFO     | sufficient remaining disk space (165362532352 B)
[2025-07-27 16:31:00] 2025-07-27 20:30:30,364 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:31:00] 2025-07-27 20:30:30,364 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:31:00] 2025-07-27 20:30:30,364 | INFO     | update_server=False
[2025-07-27 16:31:00] 2025-07-27 20:30:30,364 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:31:00] 2025-07-27 20:30:30,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:31:00] 2025-07-27 20:30:30,365 | INFO     | aborting loop
[2025-07-27 16:31:00] 2025-07-27 20:30:30,422 | INFO     | all job control threads have been joined
[2025-07-27 16:31:00] 2025-07-27 20:30:30,622 | INFO     | all data control threads have been joined
[2025-07-27 16:31:00] 2025-07-27 20:30:31,369 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:31,369 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:31,427 | INFO     | [job] control thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:31,504 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:31,518 | INFO     | all payload control threads have been joined
[2025-07-27 16:31:00] 2025-07-27 20:30:31,628 | INFO     | [data] control thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:31,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:31:00] 2025-07-27 20:30:31,874 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:32,061 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:32,202 | INFO     | [job] validate thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:32,274 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:32,325 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:32,523 | INFO     | [payload] control thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:32,611 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:32,623 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:32,832 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:31:00] 2025-07-27 20:30:32,948 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:31:00] 2025-07-27 20:30:33,671 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:33,953 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:36,837 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:31:00] 2025-07-27 20:30:36,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139928879589184)>', '<ExcThread(monitor, started 139928021235456)>']
[2025-07-27 16:31:00] 2025-07-27 20:30:41,997 | INFO     | all workflow threads have been joined
[2025-07-27 16:31:00] 2025-07-27 20:30:41,997 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:31:00] 2025-07-27 20:30:41,997 | INFO     | traces error code: 0
[2025-07-27 16:31:00] 2025-07-27 20:30:41,998 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:31:00] 2025-07-27 20:31:00,488 | INFO     | PID=2442602 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 16:31:00] 2025-07-27 20:31:00,488 | INFO     | .. there are 16 such processes running
[2025-07-27 16:31:00] 2025-07-27 20:31:00,488 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:31:00] 2025-07-27 20:31:00,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:31:00] 2025-07-27 20:31:00,488 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:31:00] 2025-07-27 20:31:00,488 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:31:00] 2025-07-27 20:31:00,488 | INFO     | [monitor] control thread has ended
[2025-07-27 16:31:00] 2025-07-27 20:31:00,610 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:31:00] 2025-07-27 20:31:00,614 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:31:00] 2025-07-27 20:31:00,617 [wrapper] pilotpid: 2442602
[2025-07-27 16:31:00] 2025-07-27 20:31:00,619 [wrapper] Pilot exit status: 0
[2025-07-27 16:31:00] 2025-07-27 20:31:00,628 [wrapper] pandaids: 6747413219
[2025-07-27 16:31:00] 2025-07-27 20:31:00,711 [wrapper] cleanup supervisor_pilot 2731459 2442603
[2025-07-27 16:31:00] 2025-07-27 20:31:00,714 [wrapper] Test setup, not cleaning
[2025-07-27 16:31:00] 2025-07-27 20:31:00,716 [wrapper] apfmon messages muted
[2025-07-27 16:31:00] 2025-07-27 20:31:00,719 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:31:00] 2025-07-27 20:31:00,720 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:31:00]  *** Error codes and diagnostics ***
[2025-07-27 16:31:00]     "exeErrorCode": 0,
[2025-07-27 16:31:00]     "exeErrorDiag": "",
[2025-07-27 16:31:00]     "pilotErrorCode": 0,
[2025-07-27 16:31:00]     "pilotErrorDiag": "",
[2025-07-27 16:31:00]  *** Listing of results directory ***
[2025-07-27 16:31:00] total 344484
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:23 queuedata.json
[2025-07-27 16:31:00] -rwx------. 1 boincer umatlas     36292 Jul 27 10:23 runpilot2-wrapper.sh
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:31:00] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:36 run_atlas
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:36 job.xml
[2025-07-27 16:31:00] -rw-r--r--. 2 boincer umatlas 145394459 Jul 27 15:36 EVNT.45743347._002779.pool.root.1
[2025-07-27 16:31:00] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:36 start_atlas.sh
[2025-07-27 16:31:00] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:36 shared
[2025-07-27 16:31:00] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 15:36 input.tar.gz
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:36 boinc_lockfile
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 15:36 pandaJob.out
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas    980125 Jul 27 15:36 agis_schedconf.cvmfs.json
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:36 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:31:00] drwx------. 4 boincer umatlas      4096 Jul 27 15:36 pilot3
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas 202228915 Jul 27 16:29 HITS.45743349._049993.pool.root.1
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas       529 Jul 27 16:29 boinc_task_state.xml
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas      1027 Jul 27 16:30 memory_monitor_summary.json
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas      7174 Jul 27 16:30 init_data.xml
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas        95 Jul 27 16:30 pilot_heartbeat.json
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas    289429 Jul 27 16:30 log.45743349._049993.job.log.tgz.1
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas      7769 Jul 27 16:30 heartbeat.json
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas        27 Jul 27 16:30 wrapper_checkpoint.txt
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 16:30 boinc_mmap_file
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas       823 Jul 27 16:31 pilotlog.txt
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas    334972 Jul 27 16:31 log.45743349._049993.job.log.1
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas       357 Jul 27 16:31 output.list
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas       620 Jul 27 16:31 runtime_log
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas    645120 Jul 27 16:31 result.tar.gz
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 16:31 runtime_log.err
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas       651 Jul 27 16:31 MzoNDm9SH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOYVLDmlJYxVn.diag
[2025-07-27 16:31:00] -rw-r--r--. 1 boincer umatlas     21765 Jul 27 16:31 stderr.txt
[2025-07-27 16:31:00] HITS file was successfully produced:
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas 202228915 Jul 27 16:29 shared/HITS.pool.root.1
[2025-07-27 16:31:00]  *** Contents of shared directory: ***
[2025-07-27 16:31:00] total 340668
[2025-07-27 16:31:00] -rw-r--r--. 2 boincer umatlas 145394459 Jul 27 15:36 ATLAS.root_0
[2025-07-27 16:31:00] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:36 start_atlas.sh
[2025-07-27 16:31:00] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 15:36 input.tar.gz
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas 202228915 Jul 27 16:29 HITS.pool.root.1
[2025-07-27 16:31:00] -rw-------. 1 boincer umatlas    645120 Jul 27 16:31 result.tar.gz
16:31:02 (2439014): run_atlas exited; CPU time 23477.171209
16:31:02 (2439014): called boinc_finish(0)

</stderr_txt>
]]>

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