Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:41:09 (1982835): wrapper (7.7.26015): starting
15:41:09 (1982835): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:41:09] Arguments: --nthreads 8
[2025-07-27 15:41:09] Threads: 8
[2025-07-27 15:41:09] Checking for CVMFS
[2025-07-27 15:41:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:41:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:41:09] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:41:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:41:10] 2.12.6.0 4167112 18813 298020 148822 2 105 25101142 32935936 19492 16776704 1 100805152 99.673 167727284 16374 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 15:41:10] CVMFS is ok
[2025-07-27 15:41:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:41:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:41:10] Further information can be found at the LHC@home message board.
[2025-07-27 15:41:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:41:10] Checking for apptainer binary...
[2025-07-27 15:41:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:41:10] Running /usr/bin/apptainer --version
[2025-07-27 15:41:10] apptainer version 1.4.1-1.el9
[2025-07-27 15:41:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:41:10] c7-16-8.aglt2.org
[2025-07-27 15:41:10] apptainer works
[2025-07-27 15:41:10] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:41:10] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:41:10] Starting ATLAS job with PandaID=6747413298
[2025-07-27 15:41:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:09:57]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:09:57]  status=None
[2025-07-27 17:09:57]  status_code=0
[2025-07-27 17:09:57]  storage_token=
[2025-07-27 17:09:57]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6747413298/log.45743349._050072.job.log.tgz.1
[2025-07-27 17:09:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/dd/log.45743349._050072.job.log.tgz.1
[2025-07-27 17:09:57]  workdir=None
[2025-07-27 17:09:57] ]
[2025-07-27 17:09:57] 2025-07-27 21:09:13,042 | INFO     | transferring file log.45743349._050072.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6747413298/log.45743349._050072.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:09:57] 2025-07-27 21:09:13,042 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6747413298/log.45743349._050072.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._050072.job
[2025-07-27 17:09:57] 2025-07-27 21:09:13,124 | INFO     | adding to output.list: log.45743349._050072.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/dd/log.45743349._050072.job.log.tg
[2025-07-27 17:09:57] 2025-07-27 21:09:13,125 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:09:57] 2025-07-27 21:09:13,125 | INFO     | summary of transferred files:
[2025-07-27 17:09:57] 2025-07-27 21:09:13,125 | INFO     |  -- lfn=log.45743349._050072.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:09:57] 2025-07-27 21:09:13,125 | INFO     | stage-out finished correctly
[2025-07-27 17:09:57] 2025-07-27 21:09:13,206 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:09:57] 2025-07-27 21:09:13,286 | INFO     | job 6747413298 has state=finished
[2025-07-27 17:09:57] 2025-07-27 21:09:13,286 | INFO     | preparing for final server update for job 6747413298 in state='finished'
[2025-07-27 17:09:57] 2025-07-27 21:09:13,286 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:09:57] 2025-07-27 21:09:13,286 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:09:57] 2025-07-27 21:09:13,286 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:09:57] 2025-07-27 21:09:13,287 | INFO     | job 6747413298 has finished - writing final server update
[2025-07-27 17:09:57] 2025-07-27 21:09:13,287 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:09:57] 2025-07-27 21:09:13,287 | INFO     | executing command: lscpu
[2025-07-27 17:09:57] 2025-07-27 21:09:13,418 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:09:57] 2025-07-27 21:09:14,430 | INFO     | PID=1987405 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 17:09:57] 2025-07-27 21:09:14,431 | INFO     | .. there are 25 such processes running
[2025-07-27 17:09:57] 2025-07-27 21:09:14,527 | INFO     | monitor loop #371: job 0:6747413298 is in state 'finished'
[2025-07-27 17:09:57] 2025-07-27 21:09:14,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:09:57] 2025-07-27 21:09:17,030 | INFO     | monitor loop #372: job 0:6747413298 is in state 'finished'
[2025-07-27 17:09:57] 2025-07-27 21:09:17,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:09:57] 2025-07-27 21:09:17,437 | INFO     | 5271s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 17:09:57] 2025-07-27 21:09:19,534 | INFO     | monitor loop #373: job 0:6747413298 is in state 'finished'
[2025-07-27 17:09:57] 2025-07-27 21:09:19,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:09:57] 2025-07-27 21:09:22,042 | INFO     | monitor loop #374: job 0:6747413298 is in state 'finished'
[2025-07-27 17:09:57] 2025-07-27 21:09:22,043 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:09:57] 2025-07-27 21:09:24,485 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 17:09:57] 2025-07-27 21:09:24,492 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3038.026979166667
[2025-07-27 17:09:57] 2025-07-27 21:09:24,508 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747413298/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:09:57] 2025-07-27 21:09:24,508 | INFO     | extracted standard info from prmon json
[2025-07-27 17:09:57] 2025-07-27 21:09:24,509 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:09:57] 2025-07-27 21:09:24,509 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:09:57] 2025-07-27 21:09:24,509 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:09:57] 2025-07-27 21:09:24,509 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:09:57] 2025-07-27 21:09:24,511 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:09:57] 2025-07-27 21:09:24,513 | INFO     | sum of square deviations: 152859412.98734194
[2025-07-27 17:09:57] 2025-07-27 21:09:24,513 | INFO     | sum of deviations: -8185314076.0
[2025-07-27 17:09:57] 2025-07-27 21:09:24,514 | INFO     | mean x: 1753648013.012658
[2025-07-27 17:09:57] 2025-07-27 21:09:24,515 | INFO     | mean y: 2245745.0
[2025-07-27 17:09:57] 2025-07-27 21:09:24,515 | INFO     | -- intersect: 93906569232.4295
[2025-07-27 17:09:57] 2025-07-27 21:09:24,515 | INFO     | intersect: 93906569232.4295
[2025-07-27 17:09:57] 2025-07-27 21:09:24,515 | INFO     | chi2: 0.06940763497599327
[2025-07-27 17:09:57] 2025-07-27 21:09:24,515 | INFO     | -- intersect: 93906569232.4295
[2025-07-27 17:09:57] 2025-07-27 21:09:24,515 | INFO     | current memory leak: -53.55 B/s (using 79 data points, chi2=0.07)
[2025-07-27 17:09:57] 2025-07-27 21:09:24,517 | INFO     | could have reported an average CPU frequency of 2983 MHz (6 samples)
[2025-07-27 17:09:57] 2025-07-27 21:09:24,517 | INFO     | ..............................
[2025-07-27 17:09:57] 2025-07-27 21:09:24,517 | INFO     | . Timing measurements:
[2025-07-27 17:09:57] 2025-07-27 21:09:24,517 | INFO     | . get job = 0 s
[2025-07-27 17:09:57] 2025-07-27 21:09:24,517 | INFO     | . initial setup = 3 s
[2025-07-27 17:09:57] 2025-07-27 21:09:24,518 | INFO     | . payload setup = 12 s
[2025-07-27 17:09:57] 2025-07-27 21:09:24,518 | INFO     | . stage-in = 0 s
[2025-07-27 17:09:57] 2025-07-27 21:09:24,518 | INFO     | . payload execution = 5226 s
[2025-07-27 17:09:57] 2025-07-27 21:09:24,518 | INFO     | . stage-out = 0 s
[2025-07-27 17:09:57] 2025-07-27 21:09:24,518 | INFO     | . log creation = 0 s
[2025-07-27 17:09:57] 2025-07-27 21:09:24,518 | INFO     | ..............................
[2025-07-27 17:09:57] 2025-07-27 21:09:24,616 | INFO     | 
[2025-07-27 17:09:57] 2025-07-27 21:09:24,616 | INFO     | job summary report
[2025-07-27 17:09:57] 2025-07-27 21:09:24,616 | INFO     | --------------------------------------------------
[2025-07-27 17:09:57] 2025-07-27 21:09:24,616 | INFO     | PanDA job id: 6747413298
[2025-07-27 17:09:57] 2025-07-27 21:09:24,616 | INFO     | task id: 45743349
[2025-07-27 17:09:57] 2025-07-27 21:09:24,616 | INFO     | errors: (none)
[2025-07-27 17:09:57] 2025-07-27 21:09:24,616 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:09:57] 2025-07-27 21:09:24,616 | INFO     | pilot state: finished 
[2025-07-27 17:09:57] 2025-07-27 21:09:24,616 | INFO     | transexitcode: 0
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | exeerrorcode: 0
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | exeerrordiag: 
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | exitcode: 0
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | exitmsg: OK
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | cpuconsumptiontime: 35485 s
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | nevents: 400
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | neventsw: 0
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | pid: 1994807
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | pgrp: 1994807
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | corecount: 8
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | event service: False
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | sizes: {0: 2397469, 10: 2397731, 11: 2397759, 5243: 2424188, 5244: 2433242, 5256: 2433380}
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | --------------------------------------------------
[2025-07-27 17:09:57] 2025-07-27 21:09:24,617 | INFO     | 
[2025-07-27 17:09:57] 2025-07-27 21:09:24,618 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 17:09:57] 2025-07-27 21:09:24,642 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,642 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,642 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,643 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:09:57] 2025-07-27 21:09:24,644 | INFO     | job 6747413298 has completed (purged errors)
[2025-07-27 17:09:57] 2025-07-27 21:09:24,644 | INFO     | overall cleanup function is called
[2025-07-27 17:09:57] 2025-07-27 21:09:25,652 | INFO     | --- collectZombieJob: --- 10, [1994807]
[2025-07-27 17:09:57] 2025-07-27 21:09:25,652 | INFO     | zombie collector waiting for pid 1994807
[2025-07-27 17:09:57] 2025-07-27 21:09:25,652 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:09:57] 2025-07-27 21:09:25,652 | INFO     | collected zombie processes
[2025-07-27 17:09:57] 2025-07-27 21:09:25,652 | INFO     | will attempt to kill all subprocesses of pid=1994807
[2025-07-27 17:09:57] 2025-07-27 21:09:26,200 | INFO     | process IDs to be killed: [1994807] (in reverse order)
[2025-07-27 17:09:57] 2025-07-27 21:09:26,425 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:09:57] 2025-07-27 21:09:26,425 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:09:57] 2025-07-27 21:09:26,451 | INFO     | did not find any defunct processes belonging to 1994807
[2025-07-27 17:09:57] 2025-07-27 21:09:26,474 | INFO     | did not find any defunct processes belonging to 1994807
[2025-07-27 17:09:57] 2025-07-27 21:09:26,475 | INFO     | ready for new job
[2025-07-27 17:09:57] 2025-07-27 21:09:26,475 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:09:57] 2025-07-27 21:09:26,476 | INFO     | ***************************************
[2025-07-27 17:09:57] 2025-07-27 21:09:26,476 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:09:57] 2025-07-27 21:09:26,476 | INFO     | ***************************************
[2025-07-27 17:09:57] 2025-07-27 21:09:26,476 | INFO     | 
[2025-07-27 17:09:57] 2025-07-27 21:09:26,496 | INFO     | architecture information:
[2025-07-27 17:09:57] 2025-07-27 21:09:26,496 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:09:57] 2025-07-27 21:09:26,517 | INFO     | cat /etc/os-release:
[2025-07-27 17:09:57] NAME="CentOS Linux"
[2025-07-27 17:09:57] VERSION="7 (Core)"
[2025-07-27 17:09:57] ID="centos"
[2025-07-27 17:09:57] ID_LIKE="rhel fedora"
[2025-07-27 17:09:57] VERSION_ID="7"
[2025-07-27 17:09:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:09:57] ANSI_COLOR="0;31"
[2025-07-27 17:09:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:09:57] HOME_URL="https://www.centos.org/"
[2025-07-27 17:09:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:09:57] 
[2025-07-27 17:09:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:09:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:09:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:09:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:09:57] 
[2025-07-27 17:09:57] 2025-07-27 21:09:26,518 | INFO     | ***************************************
[2025-07-27 17:09:57] 2025-07-27 21:09:27,024 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 17:09:57] 2025-07-27 21:09:27,048 | INFO     | sufficient remaining disk space (75877056512 B)
[2025-07-27 17:09:57] 2025-07-27 21:09:27,049 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:09:57] 2025-07-27 21:09:27,049 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:09:57] 2025-07-27 21:09:27,049 | INFO     | update_server=False
[2025-07-27 17:09:57] 2025-07-27 21:09:27,049 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:09:57] 2025-07-27 21:09:27,050 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:09:57] 2025-07-27 21:09:27,059 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 17:09:57] 2025-07-27 21:09:27,059 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 17:09:57] 2025-07-27 21:09:27,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:09:57] 2025-07-27 21:09:27,059 | INFO     | will abort loop
[2025-07-27 17:09:57] 2025-07-27 21:09:27,229 | INFO     | all payload control threads have been joined
[2025-07-27 17:09:57] 2025-07-27 21:09:27,711 | INFO     | all data control threads have been joined
[2025-07-27 17:09:57] 2025-07-27 21:09:28,055 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:28,068 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:28,068 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:28,153 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:28,204 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:28,234 | INFO     | [payload] control thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:28,341 | INFO     | all job control threads have been joined
[2025-07-27 17:09:57] 2025-07-27 21:09:28,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:09:57] 2025-07-27 21:09:28,483 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:28,717 | INFO     | [data] control thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:28,921 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:29,057 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:29,076 | INFO     | [job] validate thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:29,337 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:29,349 | INFO     | [job] control thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:29,413 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:29,620 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:09:57] 2025-07-27 21:09:30,625 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:32,353 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:09:57] 2025-07-27 21:09:33,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140058627655488)>', '<ExcThread(monitor, started 140058111751936)>']
[2025-07-27 17:09:57] 2025-07-27 21:09:38,605 | INFO     | all workflow threads have been joined
[2025-07-27 17:09:57] 2025-07-27 21:09:38,605 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:09:57] 2025-07-27 21:09:38,605 | INFO     | traces error code: 0
[2025-07-27 17:09:57] 2025-07-27 21:09:38,605 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:09:57] 2025-07-27 21:09:57,109 | INFO     | PID=1987405 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:09:57] 2025-07-27 21:09:57,109 | INFO     | .. there are 25 such processes running
[2025-07-27 17:09:57] 2025-07-27 21:09:57,109 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:09:57] 2025-07-27 21:09:57,110 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:09:57] 2025-07-27 21:09:57,110 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:09:57] 2025-07-27 21:09:57,110 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:09:57] 2025-07-27 21:09:57,110 | INFO     | [monitor] control thread has ended
[2025-07-27 17:09:57] 2025-07-27 21:09:57,233 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:09:57] 2025-07-27 21:09:57,239 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:09:57] 2025-07-27 21:09:57,245 [wrapper] pilotpid: 1987405
[2025-07-27 17:09:57] 2025-07-27 21:09:57,263 [wrapper] Pilot exit status: 0
[2025-07-27 17:09:57] 2025-07-27 21:09:57,302 [wrapper] pandaids: 6747413298
[2025-07-27 17:09:57] 2025-07-27 21:09:57,447 [wrapper] cleanup supervisor_pilot 2532591 1987406
[2025-07-27 17:09:57] 2025-07-27 21:09:57,454 [wrapper] Test setup, not cleaning
[2025-07-27 17:09:57] 2025-07-27 21:09:57,465 [wrapper] apfmon messages muted
[2025-07-27 17:09:57] 2025-07-27 21:09:57,479 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:09:57] 2025-07-27 21:09:57,535 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:09:57]  *** Error codes and diagnostics ***
[2025-07-27 17:09:57]     "exeErrorCode": 0,
[2025-07-27 17:09:57]     "exeErrorDiag": "",
[2025-07-27 17:09:57]     "pilotErrorCode": 0,
[2025-07-27 17:09:57]     "pilotErrorDiag": "",
[2025-07-27 17:09:57]  *** Listing of results directory ***
[2025-07-27 17:09:57] total 344816
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:25 queuedata.json
[2025-07-27 17:09:57] -rwx------. 1 boincer umatlas     36292 Jul 27 10:27 runpilot2-wrapper.sh
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:09:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:41 run_atlas
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:41 job.xml
[2025-07-27 17:09:57] -rw-r--r--. 2 boincer umatlas 148056590 Jul 27 15:41 EVNT.45743347._002785.pool.root.1
[2025-07-27 17:09:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:41 start_atlas.sh
[2025-07-27 17:09:57] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:41 shared
[2025-07-27 17:09:57] -rw-r--r--. 2 boincer umatlas    542883 Jul 27 15:41 input.tar.gz
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:41 boinc_lockfile
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas      2560 Jul 27 15:41 pandaJob.out
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas    980125 Jul 27 15:41 agis_schedconf.cvmfs.json
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:41 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:09:57] drwx------. 4 boincer umatlas      4096 Jul 27 15:41 pilot3
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas      6932 Jul 27 17:00 init_data.xml
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas 199560365 Jul 27 17:08 HITS.45743349._050072.pool.root.1
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:08 boinc_task_state.xml
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas        95 Jul 27 17:09 pilot_heartbeat.json
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas      1032 Jul 27 17:09 memory_monitor_summary.json
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas    295757 Jul 27 17:09 log.45743349._050072.job.log.tgz.1
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas      7764 Jul 27 17:09 heartbeat.json
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:09 wrapper_checkpoint.txt
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas       823 Jul 27 17:09 pilotlog.txt
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas    503652 Jul 27 17:09 log.45743349._050072.job.log.1
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:09 boinc_mmap_file
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas       357 Jul 27 17:09 output.list
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:09 runtime_log
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas    819200 Jul 27 17:09 result.tar.gz
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas       651 Jul 27 17:09 xoDODmFWH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVYVLDmTI2y6n.diag
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 17:09 runtime_log.err
[2025-07-27 17:09:57] -rw-r--r--. 1 boincer umatlas     22130 Jul 27 17:09 stderr.txt
[2025-07-27 17:09:57] HITS file was successfully produced:
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas 199560365 Jul 27 17:08 shared/HITS.pool.root.1
[2025-07-27 17:09:57]  *** Contents of shared directory: ***
[2025-07-27 17:09:57] total 340828
[2025-07-27 17:09:57] -rw-r--r--. 2 boincer umatlas 148056590 Jul 27 15:41 ATLAS.root_0
[2025-07-27 17:09:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:41 start_atlas.sh
[2025-07-27 17:09:57] -rw-r--r--. 2 boincer umatlas    542883 Jul 27 15:41 input.tar.gz
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas 199560365 Jul 27 17:08 HITS.pool.root.1
[2025-07-27 17:09:57] -rw-------. 1 boincer umatlas    819200 Jul 27 17:09 result.tar.gz
17:09:59 (1982835): run_atlas exited; CPU time 35647.250030
17:09:59 (1982835): called boinc_finish(0)

</stderr_txt>
]]>

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