Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:36:19 (6312): wrapper (7.7.26015): starting
15:36:19 (6312): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:36:19] Arguments: --nthreads 8
[2025-07-27 15:36:19] Threads: 8
[2025-07-27 15:36:19] Checking for CVMFS
[2025-07-27 15:36:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:36:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:36:19] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:36:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:36:19] 2.11.2.0 1598 105751 118764 148822 0 57 20190919 20275201 917 130560 0 75119582 99.986 8201342 9295 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 15:36:19] CVMFS is ok
[2025-07-27 15:36:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:36:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:36:19] Further information can be found at the LHC@home message board.
[2025-07-27 15:36:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:36:19] Checking for apptainer binary...
[2025-07-27 15:36:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:36:19] Running /usr/bin/apptainer --version
[2025-07-27 15:36:19] apptainer version 1.3.2-1.el7
[2025-07-27 15:36:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:36:20] c-205-36.aglt2.org
[2025-07-27 15:36:20] apptainer works
[2025-07-27 15:36:20] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:36:20] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:36:20] Starting ATLAS job with PandaID=6747413266
[2025-07-27 15:36:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:51:53]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:51:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 16:51:53]  replicas=None
[2025-07-27 16:51:53]  scope=mc23_13p6TeV
[2025-07-27 16:51:53]  status=None
[2025-07-27 16:51:53]  status_code=0
[2025-07-27 16:51:53]  storage_token=
[2025-07-27 16:51:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747413266/log.45743349._050040.job.log.tgz.1
[2025-07-27 16:51:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/c9/log.45743349._050040.job.log.tgz.1
[2025-07-27 16:51:53]  workdir=None
[2025-07-27 16:51:53] ]
[2025-07-27 16:51:53] 2025-07-27 20:51:13,233 | INFO     | transferring file log.45743349._050040.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747413266/log.45743349._050040.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 16:51:53] 2025-07-27 20:51:13,233 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747413266/log.45743349._050040.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._050040.job
[2025-07-27 16:51:53] 2025-07-27 20:51:13,250 | INFO     | adding to output.list: log.45743349._050040.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/c9/log.45743349._050040.job.log.tg
[2025-07-27 16:51:53] 2025-07-27 20:51:13,251 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:51:53] 2025-07-27 20:51:13,252 | INFO     | summary of transferred files:
[2025-07-27 16:51:53] 2025-07-27 20:51:13,252 | INFO     |  -- lfn=log.45743349._050040.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:51:53] 2025-07-27 20:51:13,252 | INFO     | stage-out finished correctly
[2025-07-27 16:51:53] 2025-07-27 20:51:14,039 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:51:53] 2025-07-27 20:51:15,657 | INFO     | monitor loop #338: job 0:6747413266 is in state 'finished'
[2025-07-27 16:51:53] 2025-07-27 20:51:15,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:51:53] 2025-07-27 20:51:16,361 | INFO     | job 6747413266 has state=finished
[2025-07-27 16:51:53] 2025-07-27 20:51:16,361 | INFO     | preparing for final server update for job 6747413266 in state='finished'
[2025-07-27 16:51:53] 2025-07-27 20:51:16,362 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:51:53] 2025-07-27 20:51:16,362 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:51:53] 2025-07-27 20:51:16,362 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:51:53] 2025-07-27 20:51:16,362 | INFO     | job 6747413266 has finished - writing final server update
[2025-07-27 16:51:53] 2025-07-27 20:51:16,363 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:51:53] 2025-07-27 20:51:16,363 | INFO     | executing command: lscpu
[2025-07-27 16:51:53] 2025-07-27 20:51:16,394 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:51:53] 2025-07-27 20:51:18,160 | INFO     | monitor loop #339: job 0:6747413266 is in state 'finished'
[2025-07-27 16:51:53] 2025-07-27 20:51:18,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:51:53] 2025-07-27 20:51:20,662 | INFO     | monitor loop #340: job 0:6747413266 is in state 'finished'
[2025-07-27 16:51:53] 2025-07-27 20:51:20,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:51:53] 2025-07-27 20:51:20,924 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 16:51:53] 2025-07-27 20:51:20,929 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2018.1515000000004
[2025-07-27 16:51:53] 2025-07-27 20:51:20,933 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747413266/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:51:53] 2025-07-27 20:51:20,934 | INFO     | extracted standard info from prmon json
[2025-07-27 16:51:53] 2025-07-27 20:51:20,934 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:51:53] 2025-07-27 20:51:20,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:51:53] 2025-07-27 20:51:20,935 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:51:53] 2025-07-27 20:51:20,935 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:51:53] 2025-07-27 20:51:20,937 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:51:53] 2025-07-27 20:51:20,937 | INFO     | sum of square deviations: 89127252.5
[2025-07-27 16:51:53] 2025-07-27 20:51:20,938 | INFO     | sum of deviations: -8409266691.000001
[2025-07-27 16:51:53] 2025-07-27 20:51:20,938 | INFO     | mean x: 1753647305.5
[2025-07-27 16:51:53] 2025-07-27 20:51:20,938 | INFO     | mean y: 2639471.0606060605
[2025-07-27 16:51:53] 2025-07-27 20:51:20,938 | INFO     | -- intersect: 165461435296.75998
[2025-07-27 16:51:53] 2025-07-27 20:51:20,939 | INFO     | intersect: 165461435296.75998
[2025-07-27 16:51:53] 2025-07-27 20:51:20,939 | INFO     | chi2: 0.03821603873059769
[2025-07-27 16:51:53] 2025-07-27 20:51:20,939 | INFO     | -- intersect: 165461435296.75998
[2025-07-27 16:51:53] 2025-07-27 20:51:20,939 | INFO     | current memory leak: -94.35 B/s (using 66 data points, chi2=0.04)
[2025-07-27 16:51:53] 2025-07-27 20:51:20,939 | INFO     | could have reported an average CPU frequency of 2186 MHz (6 samples)
[2025-07-27 16:51:53] 2025-07-27 20:51:20,940 | INFO     | ..............................
[2025-07-27 16:51:53] 2025-07-27 20:51:20,940 | INFO     | . Timing measurements:
[2025-07-27 16:51:53] 2025-07-27 20:51:20,940 | INFO     | . get job = 0 s
[2025-07-27 16:51:53] 2025-07-27 20:51:20,940 | INFO     | . initial setup = 2 s
[2025-07-27 16:51:53] 2025-07-27 20:51:20,940 | INFO     | . payload setup = 7 s
[2025-07-27 16:51:53] 2025-07-27 20:51:20,940 | INFO     | . stage-in = 0 s
[2025-07-27 16:51:53] 2025-07-27 20:51:20,940 | INFO     | . payload execution = 4454 s
[2025-07-27 16:51:53] 2025-07-27 20:51:20,940 | INFO     | . stage-out = 0 s
[2025-07-27 16:51:53] 2025-07-27 20:51:20,941 | INFO     | . log creation = 0 s
[2025-07-27 16:51:53] 2025-07-27 20:51:20,941 | INFO     | ..............................
[2025-07-27 16:51:53] 2025-07-27 20:51:21,024 | INFO     | 
[2025-07-27 16:51:53] 2025-07-27 20:51:21,025 | INFO     | job summary report
[2025-07-27 16:51:53] 2025-07-27 20:51:21,025 | INFO     | --------------------------------------------------
[2025-07-27 16:51:53] 2025-07-27 20:51:21,025 | INFO     | PanDA job id: 6747413266
[2025-07-27 16:51:53] 2025-07-27 20:51:21,025 | INFO     | task id: 45743349
[2025-07-27 16:51:53] 2025-07-27 20:51:21,025 | INFO     | errors: (none)
[2025-07-27 16:51:53] 2025-07-27 20:51:21,025 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:51:53] 2025-07-27 20:51:21,025 | INFO     | pilot state: finished 
[2025-07-27 16:51:53] 2025-07-27 20:51:21,025 | INFO     | transexitcode: 0
[2025-07-27 16:51:53] 2025-07-27 20:51:21,026 | INFO     | exeerrorcode: 0
[2025-07-27 16:51:53] 2025-07-27 20:51:21,026 | INFO     | exeerrordiag: 
[2025-07-27 16:51:53] 2025-07-27 20:51:21,026 | INFO     | exitcode: 0
[2025-07-27 16:51:53] 2025-07-27 20:51:21,026 | INFO     | exitmsg: OK
[2025-07-27 16:51:53] 2025-07-27 20:51:21,026 | INFO     | cpuconsumptiontime: 33398 s
[2025-07-27 16:51:53] 2025-07-27 20:51:21,026 | INFO     | nevents: 400
[2025-07-27 16:51:53] 2025-07-27 20:51:21,026 | INFO     | neventsw: 0
[2025-07-27 16:51:53] 2025-07-27 20:51:21,026 | INFO     | pid: 16450
[2025-07-27 16:51:53] 2025-07-27 20:51:21,026 | INFO     | pgrp: 16450
[2025-07-27 16:51:53] 2025-07-27 20:51:21,027 | INFO     | corecount: 8
[2025-07-27 16:51:53] 2025-07-27 20:51:21,027 | INFO     | event service: False
[2025-07-27 16:51:53] 2025-07-27 20:51:21,027 | INFO     | sizes: {0: 2397197, 1: 2397452, 5: 2397714, 12: 2397770, 4465: 2423985, 4466: 2432983, 4467: 2433167, 4474: 2433361}
[2025-07-27 16:51:53] 2025-07-27 20:51:21,027 | INFO     | --------------------------------------------------
[2025-07-27 16:51:53] 2025-07-27 20:51:21,027 | INFO     | 
[2025-07-27 16:51:53] 2025-07-27 20:51:21,027 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 16:51:53] 2025-07-27 20:51:21,047 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,047 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,047 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,047 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,048 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,048 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,048 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,048 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,048 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,048 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,048 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,048 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,048 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,049 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,049 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,049 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,049 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,049 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:51:53] 2025-07-27 20:51:21,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,049 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:51:53] 2025-07-27 20:51:21,049 | INFO     | job 6747413266 has completed (purged errors)
[2025-07-27 16:51:53] 2025-07-27 20:51:21,050 | INFO     | overall cleanup function is called
[2025-07-27 16:51:53] 2025-07-27 20:51:22,057 | INFO     | --- collectZombieJob: --- 10, [16450]
[2025-07-27 16:51:53] 2025-07-27 20:51:22,057 | INFO     | zombie collector waiting for pid 16450
[2025-07-27 16:51:53] 2025-07-27 20:51:22,057 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:51:53] 2025-07-27 20:51:22,057 | INFO     | collected zombie processes
[2025-07-27 16:51:53] 2025-07-27 20:51:22,057 | INFO     | will attempt to kill all subprocesses of pid=16450
[2025-07-27 16:51:53] 2025-07-27 20:51:22,171 | INFO     | process IDs to be killed: [16450] (in reverse order)
[2025-07-27 16:51:53] 2025-07-27 20:51:22,217 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:51:53] 2025-07-27 20:51:22,217 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:51:53] 2025-07-27 20:51:22,220 | INFO     | did not find any defunct processes belonging to 16450
[2025-07-27 16:51:53] 2025-07-27 20:51:22,223 | INFO     | did not find any defunct processes belonging to 16450
[2025-07-27 16:51:53] 2025-07-27 20:51:22,223 | INFO     | ready for new job
[2025-07-27 16:51:53] 2025-07-27 20:51:22,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:51:53] 2025-07-27 20:51:22,224 | INFO     | ***************************************
[2025-07-27 16:51:53] 2025-07-27 20:51:22,224 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:51:53] 2025-07-27 20:51:22,224 | INFO     | ***************************************
[2025-07-27 16:51:53] 2025-07-27 20:51:22,224 | INFO     | 
[2025-07-27 16:51:53] 2025-07-27 20:51:22,225 | INFO     | architecture information:
[2025-07-27 16:51:53] 2025-07-27 20:51:22,226 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:51:53] 2025-07-27 20:51:22,240 | INFO     | cat /etc/os-release:
[2025-07-27 16:51:53] NAME="CentOS Linux"
[2025-07-27 16:51:53] VERSION="7 (Core)"
[2025-07-27 16:51:53] ID="centos"
[2025-07-27 16:51:53] ID_LIKE="rhel fedora"
[2025-07-27 16:51:53] VERSION_ID="7"
[2025-07-27 16:51:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:51:53] ANSI_COLOR="0;31"
[2025-07-27 16:51:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:51:53] HOME_URL="https://www.centos.org/"
[2025-07-27 16:51:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:51:53] 
[2025-07-27 16:51:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:51:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:51:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:51:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:51:53] 
[2025-07-27 16:51:53] 2025-07-27 20:51:22,240 | INFO     | ***************************************
[2025-07-27 16:51:53] 2025-07-27 20:51:22,743 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 16:51:53] 2025-07-27 20:51:22,760 | INFO     | sufficient remaining disk space (33016512512 B)
[2025-07-27 16:51:53] 2025-07-27 20:51:22,761 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:51:53] 2025-07-27 20:51:22,761 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:51:53] 2025-07-27 20:51:22,761 | INFO     | update_server=False
[2025-07-27 16:51:53] 2025-07-27 20:51:22,761 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:51:53] 2025-07-27 20:51:22,762 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:51:53] 2025-07-27 20:51:22,897 | INFO     | all data control threads have been joined
[2025-07-27 16:51:53] 2025-07-27 20:51:23,088 | INFO     | all payload control threads have been joined
[2025-07-27 16:51:53] 2025-07-27 20:51:23,165 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 16:51:53] 2025-07-27 20:51:23,165 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 16:51:53] 2025-07-27 20:51:23,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:51:53] 2025-07-27 20:51:23,166 | INFO     | will abort loop
[2025-07-27 16:51:53] 2025-07-27 20:51:23,763 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:23,767 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:23,847 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:51:53] 2025-07-27 20:51:23,903 | INFO     | [data] control thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:24,092 | INFO     | [payload] control thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:24,166 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:24,222 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:24,395 | INFO     | all job control threads have been joined
[2025-07-27 16:51:53] 2025-07-27 20:51:24,497 | INFO     | [job] validate thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:24,588 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:24,594 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:24,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:51:53] 2025-07-27 20:51:24,743 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:24,799 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:25,007 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:25,400 | INFO     | [job] control thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:25,853 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:28,637 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:28,978 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-07-27 16:51:53] 2025-07-27 20:51:33,711 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:51:53] 2025-07-27 20:51:34,717 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:51:53] 2025-07-27 20:51:36,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223955519296)>', '<ExcThread(monitor, started 140223669319424)>']
[2025-07-27 16:51:53] 2025-07-27 20:51:41,557 | INFO     | all workflow threads have been joined
[2025-07-27 16:51:53] 2025-07-27 20:51:41,558 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:51:53] 2025-07-27 20:51:41,558 | INFO     | traces error code: 0
[2025-07-27 16:51:53] 2025-07-27 20:51:41,559 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:51:53] 2025-07-27 20:51:53,673 | INFO     | PID=9934 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 16:51:53] 2025-07-27 20:51:53,673 | INFO     | .. there are 2 such processes running
[2025-07-27 16:51:53] 2025-07-27 20:51:53,674 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:51:53] 2025-07-27 20:51:53,674 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:51:53] 2025-07-27 20:51:53,674 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:51:53] 2025-07-27 20:51:53,674 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:51:53] 2025-07-27 20:51:53,674 | INFO     | [monitor] control thread has ended
[2025-07-27 16:51:53] 2025-07-27 20:51:53,774 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:51:53] 2025-07-27 20:51:53,777 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:51:53] 2025-07-27 20:51:53,781 [wrapper] pilotpid: 9934
[2025-07-27 16:51:53] 2025-07-27 20:51:53,784 [wrapper] Pilot exit status: 0
[2025-07-27 16:51:53] 2025-07-27 20:51:53,796 [wrapper] pandaids: 6747413266
[2025-07-27 16:51:53] 2025-07-27 20:51:53,836 [wrapper] cleanup supervisor_pilot  2694 9935
[2025-07-27 16:51:53] 2025-07-27 20:51:53,839 [wrapper] Test setup, not cleaning
[2025-07-27 16:51:53] 2025-07-27 20:51:53,842 [wrapper] apfmon messages muted
[2025-07-27 16:51:53] 2025-07-27 20:51:53,846 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:51:53] 2025-07-27 20:51:53,849 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:51:53]  *** Error codes and diagnostics ***
[2025-07-27 16:51:53]     "exeErrorCode": 0,
[2025-07-27 16:51:53]     "exeErrorDiag": "",
[2025-07-27 16:51:53]     "pilotErrorCode": 0,
[2025-07-27 16:51:53]     "pilotErrorDiag": "",
[2025-07-27 16:51:53]  *** Listing of results directory ***
[2025-07-27 16:51:53] total 350108
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 10:25 queuedata.json
[2025-07-27 16:51:53] -rwx------ 1 boincer umatlas     36292 Jul 27 10:26 runpilot2-wrapper.sh
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas       100 Jul 27 15:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:51:53] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 15:36 run_atlas
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas       105 Jul 27 15:36 job.xml
[2025-07-27 16:51:53] -rw-r--r-- 2 boincer umatlas 146314960 Jul 27 15:36 EVNT.45743347._002782.pool.root.1
[2025-07-27 16:51:53] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 15:36 start_atlas.sh
[2025-07-27 16:51:53] drwxrwx--x 2 boincer umatlas      4096 Jul 27 15:36 shared
[2025-07-27 16:51:53] -rw-r--r-- 2 boincer umatlas    542892 Jul 27 15:36 input.tar.gz
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas         0 Jul 27 15:36 boinc_lockfile
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas      2562 Jul 27 15:36 pandaJob.out
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas    980125 Jul 27 15:36 agis_schedconf.cvmfs.json
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas   1593052 Jul 27 15:36 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:51:53] drwx------ 4 boincer umatlas      4096 Jul 27 15:36 pilot3
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas      6048 Jul 27 16:46 init_data.xml
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas 206809417 Jul 27 16:50 HITS.45743349._050040.pool.root.1
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas       529 Jul 27 16:50 boinc_task_state.xml
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas      1047 Jul 27 16:51 memory_monitor_summary.json
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas    306499 Jul 27 16:51 log.45743349._050040.job.log.tgz.1
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas      7838 Jul 27 16:51 heartbeat.json
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 16:51 boinc_mmap_file
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas        27 Jul 27 16:51 wrapper_checkpoint.txt
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas        95 Jul 27 16:51 pilot_heartbeat.json
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas       819 Jul 27 16:51 pilotlog.txt
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas    448598 Jul 27 16:51 log.45743349._050040.job.log.1
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas       357 Jul 27 16:51 output.list
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas       620 Jul 27 16:51 runtime_log
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas    778240 Jul 27 16:51 result.tar.gz
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas      8660 Jul 27 16:51 runtime_log.err
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas       658 Jul 27 16:51 HKZKDmkVH07n9Rq4apOajLDm4fhM0noT9bVof3QYDm4f2KDmuYvCHo.diag
[2025-07-27 16:51:53] -rw-r--r-- 1 boincer umatlas     21828 Jul 27 16:51 stderr.txt
[2025-07-27 16:51:53] HITS file was successfully produced:
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas 206809417 Jul 27 16:50 shared/HITS.pool.root.1
[2025-07-27 16:51:53]  *** Contents of shared directory: ***
[2025-07-27 16:51:53] total 346164
[2025-07-27 16:51:53] -rw-r--r-- 2 boincer umatlas 146314960 Jul 27 15:36 ATLAS.root_0
[2025-07-27 16:51:53] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 15:36 start_atlas.sh
[2025-07-27 16:51:53] -rw-r--r-- 2 boincer umatlas    542892 Jul 27 15:36 input.tar.gz
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas 206809417 Jul 27 16:50 HITS.pool.root.1
[2025-07-27 16:51:53] -rw------- 1 boincer umatlas    778240 Jul 27 16:51 result.tar.gz
16:51:55 (6312): run_atlas exited; CPU time 33384.422192
16:51:55 (6312): called boinc_finish(0)

</stderr_txt>
]]>

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