Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:44:59 (2540684): wrapper (7.7.26015): starting
15:44:59 (2540684): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:44:59] Arguments: --nthreads 8
[2025-07-27 15:44:59] Threads: 8
[2025-07-27 15:44:59] Checking for CVMFS
[2025-07-27 15:44:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:44:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:44:59] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:45:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:45:00] 2.13.1.0 116762 8830 201860 148822 1 188 34936298 40960001 13740 16776704 0 123253353 99.999 339676 39074 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 15:45:00] CVMFS is ok
[2025-07-27 15:45:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:45:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:45:00] Further information can be found at the LHC@home message board.
[2025-07-27 15:45:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:45:00] Checking for apptainer binary...
[2025-07-27 15:45:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:45:00] Running /usr/bin/apptainer --version
[2025-07-27 15:45:00] apptainer version 1.4.1-1.el9
[2025-07-27 15:45:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:45:00] c-208-39.aglt2.org
[2025-07-27 15:45:00] apptainer works
[2025-07-27 15:45:00] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:45:00] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:45:00] Starting ATLAS job with PandaID=6747412640
[2025-07-27 15:45:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:41:19]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:41:19]  lfn=log.45743349._049560.job.log.tgz.1
[2025-07-27 16:41:19]  mtime=0
[2025-07-27 16:41:19]  protocol_id=None
[2025-07-27 16:41:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 16:41:19]  replicas=None
[2025-07-27 16:41:19]  scope=mc23_13p6TeV
[2025-07-27 16:41:19]  status=None
[2025-07-27 16:41:19]  status_code=0
[2025-07-27 16:41:19]  storage_token=
[2025-07-27 16:41:19]  surl=/tmp/boinchome/slots/10/PanDA_Pilot-6747412640/log.45743349._049560.job.log.tgz.1
[2025-07-27 16:41:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/9d/log.45743349._049560.job.log.tgz.1
[2025-07-27 16:41:19]  workdir=None
[2025-07-27 16:41:19] ]
[2025-07-27 16:41:19] 2025-07-27 20:40:41,303 | INFO     | transferring file log.45743349._049560.job.log.tgz.1 from /tmp/boinchome/slots/10/PanDA_Pilot-6747412640/log.45743349._049560.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-27 16:41:19] 2025-07-27 20:40:41,304 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/10/PanDA_Pilot-6747412640/log.45743349._049560.job.log.tgz.1 /tmp/boinchome/slots/10/log.45743349._049560.j
[2025-07-27 16:41:19] 2025-07-27 20:40:41,324 | INFO     | adding to output.list: log.45743349._049560.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/9d/log.45743349._049560.job.log.tg
[2025-07-27 16:41:19] 2025-07-27 20:40:41,325 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:41:19] 2025-07-27 20:40:41,325 | INFO     | summary of transferred files:
[2025-07-27 16:41:19] 2025-07-27 20:40:41,325 | INFO     |  -- lfn=log.45743349._049560.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:41:19] 2025-07-27 20:40:41,325 | INFO     | stage-out finished correctly
[2025-07-27 16:41:19] 2025-07-27 20:40:41,383 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:41:19] 2025-07-27 20:40:42,057 | INFO     | job 6747412640 has state=finished
[2025-07-27 16:41:19] 2025-07-27 20:40:42,057 | INFO     | preparing for final server update for job 6747412640 in state='finished'
[2025-07-27 16:41:19] 2025-07-27 20:40:42,057 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:41:19] 2025-07-27 20:40:42,057 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:41:19] 2025-07-27 20:40:42,057 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:41:19] 2025-07-27 20:40:42,058 | INFO     | job 6747412640 has finished - writing final server update
[2025-07-27 16:41:19] 2025-07-27 20:40:42,058 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:41:19] 2025-07-27 20:40:42,058 | INFO     | executing command: lscpu
[2025-07-27 16:41:19] 2025-07-27 20:40:42,114 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:41:19] 2025-07-27 20:40:42,128 | INFO     | monitor loop #242: job 0:6747412640 is in state 'finished'
[2025-07-27 16:41:19] 2025-07-27 20:40:42,128 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:41:19] 2025-07-27 20:40:44,631 | INFO     | monitor loop #243: job 0:6747412640 is in state 'finished'
[2025-07-27 16:41:19] 2025-07-27 20:40:44,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:41:19] 2025-07-27 20:40:45,966 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 16:41:19] 2025-07-27 20:40:45,971 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.9436484374983
[2025-07-27 16:41:19] 2025-07-27 20:40:45,985 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6747412640/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:41:19] 2025-07-27 20:40:45,985 | INFO     | extracted standard info from prmon json
[2025-07-27 16:41:19] 2025-07-27 20:40:45,986 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:41:19] 2025-07-27 20:40:45,986 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:41:19] 2025-07-27 20:40:45,986 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:41:19] 2025-07-27 20:40:45,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:41:19] 2025-07-27 20:40:45,987 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:41:19] 2025-07-27 20:40:45,988 | INFO     | sum of square deviations: 34277852.0
[2025-07-27 16:41:19] 2025-07-27 20:40:45,988 | INFO     | sum of deviations: -343045273.0000001
[2025-07-27 16:41:19] 2025-07-27 20:40:45,988 | INFO     | mean x: 1753647272.5
[2025-07-27 16:41:19] 2025-07-27 20:40:45,988 | INFO     | mean y: 2535905.2916666665
[2025-07-27 16:41:19] 2025-07-27 20:40:45,988 | INFO     | -- intersect: 17552655654.34911
[2025-07-27 16:41:19] 2025-07-27 20:40:45,988 | INFO     | intersect: 17552655654.34911
[2025-07-27 16:41:19] 2025-07-27 20:40:45,988 | INFO     | chi2: 0.000728888842072738
[2025-07-27 16:41:19] 2025-07-27 20:40:45,988 | INFO     | -- intersect: 17552655654.34911
[2025-07-27 16:41:19] 2025-07-27 20:40:45,988 | INFO     | current memory leak: -10.01 B/s (using 48 data points, chi2=0.00)
[2025-07-27 16:41:19] 2025-07-27 20:40:45,988 | INFO     | could have reported an average CPU frequency of 3797 MHz (5 samples)
[2025-07-27 16:41:19] 2025-07-27 20:40:45,988 | INFO     | ..............................
[2025-07-27 16:41:19] 2025-07-27 20:40:45,989 | INFO     | . Timing measurements:
[2025-07-27 16:41:19] 2025-07-27 20:40:45,989 | INFO     | . get job = 0 s
[2025-07-27 16:41:19] 2025-07-27 20:40:45,989 | INFO     | . initial setup = 2 s
[2025-07-27 16:41:19] 2025-07-27 20:40:45,989 | INFO     | . payload setup = 5 s
[2025-07-27 16:41:19] 2025-07-27 20:40:45,989 | INFO     | . stage-in = 0 s
[2025-07-27 16:41:19] 2025-07-27 20:40:45,989 | INFO     | . payload execution = 3306 s
[2025-07-27 16:41:19] 2025-07-27 20:40:45,989 | INFO     | . stage-out = 0 s
[2025-07-27 16:41:19] 2025-07-27 20:40:45,989 | INFO     | . log creation = 0 s
[2025-07-27 16:41:19] 2025-07-27 20:40:45,989 | INFO     | ..............................
[2025-07-27 16:41:19] 2025-07-27 20:40:46,048 | INFO     | 
[2025-07-27 16:41:19] 2025-07-27 20:40:46,048 | INFO     | job summary report
[2025-07-27 16:41:19] 2025-07-27 20:40:46,048 | INFO     | --------------------------------------------------
[2025-07-27 16:41:19] 2025-07-27 20:40:46,048 | INFO     | PanDA job id: 6747412640
[2025-07-27 16:41:19] 2025-07-27 20:40:46,048 | INFO     | task id: 45743349
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | errors: (none)
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | pilot state: finished 
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | transexitcode: 0
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | exeerrorcode: 0
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | exeerrordiag: 
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | exitcode: 0
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | exitmsg: OK
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | cpuconsumptiontime: 24493 s
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | nevents: 400
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | neventsw: 0
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | pid: 2550882
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | pgrp: 2550882
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | corecount: 8
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | event service: False
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | sizes: {0: 2396596, 1: 2397453, 5: 2397715, 11: 2397771, 3316: 2423452, 3317: 2432452, 3318: 2432636, 3322: 2432862}
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | --------------------------------------------------
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | 
[2025-07-27 16:41:19] 2025-07-27 20:40:46,049 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,073 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,074 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,074 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,074 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,074 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:41:19] 2025-07-27 20:40:46,074 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,074 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:41:19] 2025-07-27 20:40:46,074 | INFO     | job 6747412640 has completed (purged errors)
[2025-07-27 16:41:19] 2025-07-27 20:40:46,074 | INFO     | overall cleanup function is called
[2025-07-27 16:41:19] 2025-07-27 20:40:47,081 | INFO     | --- collectZombieJob: --- 10, [2550882]
[2025-07-27 16:41:19] 2025-07-27 20:40:47,081 | INFO     | zombie collector waiting for pid 2550882
[2025-07-27 16:41:19] 2025-07-27 20:40:47,082 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:41:19] 2025-07-27 20:40:47,082 | INFO     | collected zombie processes
[2025-07-27 16:41:19] 2025-07-27 20:40:47,082 | INFO     | will attempt to kill all subprocesses of pid=2550882
[2025-07-27 16:41:19] 2025-07-27 20:40:47,438 | INFO     | process IDs to be killed: [2550882] (in reverse order)
[2025-07-27 16:41:19] 2025-07-27 20:40:47,559 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:41:19] 2025-07-27 20:40:47,560 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:41:19] 2025-07-27 20:40:47,576 | INFO     | did not find any defunct processes belonging to 2550882
[2025-07-27 16:41:19] 2025-07-27 20:40:47,589 | INFO     | did not find any defunct processes belonging to 2550882
[2025-07-27 16:41:19] 2025-07-27 20:40:47,589 | INFO     | ready for new job
[2025-07-27 16:41:19] 2025-07-27 20:40:47,589 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:41:19] 2025-07-27 20:40:47,591 | INFO     | ***************************************
[2025-07-27 16:41:19] 2025-07-27 20:40:47,591 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:41:19] 2025-07-27 20:40:47,591 | INFO     | ***************************************
[2025-07-27 16:41:19] 2025-07-27 20:40:47,591 | INFO     | 
[2025-07-27 16:41:19] 2025-07-27 20:40:47,595 | INFO     | architecture information:
[2025-07-27 16:41:19] 2025-07-27 20:40:47,596 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:41:19] 2025-07-27 20:40:47,612 | INFO     | cat /etc/os-release:
[2025-07-27 16:41:19] NAME="CentOS Linux"
[2025-07-27 16:41:19] VERSION="7 (Core)"
[2025-07-27 16:41:19] ID="centos"
[2025-07-27 16:41:19] ID_LIKE="rhel fedora"
[2025-07-27 16:41:19] VERSION_ID="7"
[2025-07-27 16:41:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:41:19] ANSI_COLOR="0;31"
[2025-07-27 16:41:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:41:19] HOME_URL="https://www.centos.org/"
[2025-07-27 16:41:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:41:19] 
[2025-07-27 16:41:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:41:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:41:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:41:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:41:19] 
[2025-07-27 16:41:19] 2025-07-27 20:40:47,612 | INFO     | ***************************************
[2025-07-27 16:41:19] 2025-07-27 20:40:48,113 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-07-27 16:41:19] 2025-07-27 20:40:48,132 | INFO     | sufficient remaining disk space (165667667968 B)
[2025-07-27 16:41:19] 2025-07-27 20:40:48,133 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:41:19] 2025-07-27 20:40:48,133 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:41:19] 2025-07-27 20:40:48,133 | INFO     | update_server=False
[2025-07-27 16:41:19] 2025-07-27 20:40:48,133 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:41:19] 2025-07-27 20:40:48,133 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:41:19] 2025-07-27 20:40:48,139 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:41:19] 2025-07-27 20:40:48,139 | INFO     | aborting loop
[2025-07-27 16:41:19] 2025-07-27 20:40:48,238 | INFO     | all data control threads have been joined
[2025-07-27 16:41:19] 2025-07-27 20:40:48,311 | INFO     | all job control threads have been joined
[2025-07-27 16:41:19] 2025-07-27 20:40:49,138 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:49,143 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:49,243 | INFO     | [data] control thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:49,308 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:49,316 | INFO     | [job] control thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:49,377 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:49,390 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:41:19] 2025-07-27 20:40:49,485 | INFO     | all payload control threads have been joined
[2025-07-27 16:41:19] 2025-07-27 20:40:49,580 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:49,627 | INFO     | [job] validate thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:49,978 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:50,244 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:50,256 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:50,490 | INFO     | [payload] control thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:51,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:41:19] 2025-07-27 20:40:51,397 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:52,062 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:52,140 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:40:58,669 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:41:19] 2025-07-27 20:40:59,673 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:41:19] 2025-07-27 20:41:00,618 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140359691179840)>', '<ExcThread(monitor, started 140358893680384)>']
[2025-07-27 16:41:19] 2025-07-27 20:41:05,644 | INFO     | all workflow threads have been joined
[2025-07-27 16:41:19] 2025-07-27 20:41:05,644 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:41:19] 2025-07-27 20:41:05,645 | INFO     | traces error code: 0
[2025-07-27 16:41:19] 2025-07-27 20:41:05,645 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:41:19] 2025-07-27 20:41:17,595 | INFO     | 3340s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 16:41:19] 2025-07-27 20:41:19,041 | INFO     | PID=2544487 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 16:41:19] 2025-07-27 20:41:19,041 | INFO     | .. there are 16 such processes running
[2025-07-27 16:41:19] 2025-07-27 20:41:19,042 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:41:19] 2025-07-27 20:41:19,042 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:41:19] 2025-07-27 20:41:19,042 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:41:19] 2025-07-27 20:41:19,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:41:19] 2025-07-27 20:41:19,042 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 16:41:19] 2025-07-27 20:41:19,042 | INFO     | [monitor] control thread has ended
[2025-07-27 16:41:19] 2025-07-27 20:41:19,156 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:41:19] 2025-07-27 20:41:19,158 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:41:19] 2025-07-27 20:41:19,161 [wrapper] pilotpid: 2544487
[2025-07-27 16:41:19] 2025-07-27 20:41:19,162 [wrapper] Pilot exit status: 0
[2025-07-27 16:41:19] 2025-07-27 20:41:19,171 [wrapper] pandaids: 6747412640
[2025-07-27 16:41:19] 2025-07-27 20:41:19,252 [wrapper] cleanup supervisor_pilot 2798105 2544488
[2025-07-27 16:41:19] 2025-07-27 20:41:19,255 [wrapper] Test setup, not cleaning
[2025-07-27 16:41:19] 2025-07-27 20:41:19,257 [wrapper] apfmon messages muted
[2025-07-27 16:41:19] 2025-07-27 20:41:19,260 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:41:19] 2025-07-27 20:41:19,261 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:41:19]  *** Error codes and diagnostics ***
[2025-07-27 16:41:19]     "exeErrorCode": 0,
[2025-07-27 16:41:19]     "exeErrorDiag": "",
[2025-07-27 16:41:19]     "pilotErrorCode": 0,
[2025-07-27 16:41:19]     "pilotErrorDiag": "",
[2025-07-27 16:41:19]  *** Listing of results directory ***
[2025-07-27 16:41:19] total 437720
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 09:42 pilot3.tar.gz
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:04 queuedata.json
[2025-07-27 16:41:19] -rwx------. 1 boincer umatlas     36292 Jul 27 10:06 runpilot2-wrapper.sh
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:41:19] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:44 run_atlas
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:44 job.xml
[2025-07-27 16:41:19] -rw-r--r--. 2 boincer umatlas 228611461 Jul 27 15:44 EVNT.45743347._002733.pool.root.1
[2025-07-27 16:41:19] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:44 start_atlas.sh
[2025-07-27 16:41:19] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:44 shared
[2025-07-27 16:41:19] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 15:44 input.tar.gz
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:44 boinc_lockfile
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 15:45 pandaJob.out
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas    980125 Jul 27 15:45 agis_schedconf.cvmfs.json
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:45 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:41:19] drwx------. 4 boincer umatlas      4096 Jul 27 15:45 pilot3
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas      7175 Jul 27 16:37 init_data.xml
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas 214467141 Jul 27 16:40 HITS.45743349._049560.pool.root.1
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas       530 Jul 27 16:40 boinc_task_state.xml
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas      1026 Jul 27 16:40 memory_monitor_summary.json
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas    293533 Jul 27 16:40 log.45743349._049560.job.log.tgz.1
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas      7769 Jul 27 16:40 heartbeat.json
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 16:41 boinc_mmap_file
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas        27 Jul 27 16:41 wrapper_checkpoint.txt
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas        95 Jul 27 16:41 pilot_heartbeat.json
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas      1008 Jul 27 16:41 pilotlog.txt
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas    341673 Jul 27 16:41 log.45743349._049560.job.log.1
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas       357 Jul 27 16:41 output.list
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas       620 Jul 27 16:41 runtime_log
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas    655360 Jul 27 16:41 result.tar.gz
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas       651 Jul 27 16:41 Nt2MDmCCH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCTVLDm3b6RTm.diag
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas      8674 Jul 27 16:41 runtime_log.err
[2025-07-27 16:41:19] -rw-r--r--. 1 boincer umatlas     21647 Jul 27 16:41 stderr.txt
[2025-07-27 16:41:19] HITS file was successfully produced:
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas 214467141 Jul 27 16:40 shared/HITS.pool.root.1
[2025-07-27 16:41:19]  *** Contents of shared directory: ***
[2025-07-27 16:41:19] total 433892
[2025-07-27 16:41:19] -rw-r--r--. 2 boincer umatlas 228611461 Jul 27 15:44 ATLAS.root_0
[2025-07-27 16:41:19] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:44 start_atlas.sh
[2025-07-27 16:41:19] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 15:44 input.tar.gz
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas 214467141 Jul 27 16:40 HITS.pool.root.1
[2025-07-27 16:41:19] -rw-------. 1 boincer umatlas    655360 Jul 27 16:41 result.tar.gz
16:41:21 (2540684): run_atlas exited; CPU time 24575.683369
16:41:21 (2540684): called boinc_finish(0)

</stderr_txt>
]]>

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