Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:49:37 (3193399): wrapper (7.7.26015): starting
16:49:37 (3193399): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:49:37] Arguments: --nthreads 12
[2025-07-27 16:49:37] Threads: 12
[2025-07-27 16:49:37] Checking for CVMFS
[2025-07-27 16:49:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:49:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:49:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:49:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:49:38] 2.12.6.0 1267368 18862 341252 148823 1 428 23945928 32935936 7515 16776704 0 34779068 99.696 66016662 29459 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 16:49:38] CVMFS is ok
[2025-07-27 16:49:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:49:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:49:38] Further information can be found at the LHC@home message board.
[2025-07-27 16:49:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:49:38] Checking for apptainer binary...
[2025-07-27 16:49:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:49:38] Running /usr/bin/apptainer --version
[2025-07-27 16:49:38] apptainer version 1.4.1-1.el9
[2025-07-27 16:49:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:49:38] c6-2-29-3.aglt2.org
[2025-07-27 16:49:38] apptainer works
[2025-07-27 16:49:38] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:49:38] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:49:38] Starting ATLAS job with PandaID=6747413047
[2025-07-27 16:49:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:59:18]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:59:18]  mtime=0
[2025-07-27 17:59:18]  protocol_id=None
[2025-07-27 17:59:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:59:18]  replicas=None
[2025-07-27 17:59:18]  scope=mc23_13p6TeV
[2025-07-27 17:59:18]  status=None
[2025-07-27 17:59:18]  status_code=0
[2025-07-27 17:59:18]  storage_token=
[2025-07-27 17:59:18]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747413047/log.45743349._049930.job.log.tgz.1
[2025-07-27 17:59:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/85/log.45743349._049930.job.log.tgz.1
[2025-07-27 17:59:18]  workdir=None
[2025-07-27 17:59:18] ]
[2025-07-27 17:59:18] 2025-07-27 21:58:37,521 | INFO     | transferring file log.45743349._049930.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747413047/log.45743349._049930.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:59:18] 2025-07-27 21:58:37,521 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747413047/log.45743349._049930.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049930.job
[2025-07-27 17:59:18] 2025-07-27 21:58:37,537 | INFO     | adding to output.list: log.45743349._049930.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/85/log.45743349._049930.job.log.tg
[2025-07-27 17:59:18] 2025-07-27 21:58:37,538 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:59:18] 2025-07-27 21:58:37,538 | INFO     | summary of transferred files:
[2025-07-27 17:59:18] 2025-07-27 21:58:37,538 | INFO     |  -- lfn=log.45743349._049930.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:59:18] 2025-07-27 21:58:37,538 | INFO     | stage-out finished correctly
[2025-07-27 17:59:18] 2025-07-27 21:58:37,822 | WARNING  | process 3209233 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 17:59:18] 2025-07-27 21:58:37,822 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747413047/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:59:18] 2025-07-27 21:58:38,019 | INFO     | number of running child processes to parent process 3209233: 1
[2025-07-27 17:59:18] 2025-07-27 21:58:38,019 | INFO     | maximum number of monitored processes: 6
[2025-07-27 17:59:18] 2025-07-27 21:58:40,327 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:59:18] 2025-07-27 21:58:40,521 | INFO     | monitor loop #306: job 0:6747413047 is in state 'finished'
[2025-07-27 17:59:18] 2025-07-27 21:58:40,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:59:18] 2025-07-27 21:58:42,012 | INFO     | job 6747413047 has state=finished
[2025-07-27 17:59:18] 2025-07-27 21:58:42,012 | INFO     | preparing for final server update for job 6747413047 in state='finished'
[2025-07-27 17:59:18] 2025-07-27 21:58:42,013 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:59:18] 2025-07-27 21:58:42,013 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:59:18] 2025-07-27 21:58:42,013 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:59:18] 2025-07-27 21:58:42,013 | INFO     | job 6747413047 has finished - writing final server update
[2025-07-27 17:59:18] 2025-07-27 21:58:42,013 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:59:18] 2025-07-27 21:58:42,014 | INFO     | executing command: lscpu
[2025-07-27 17:59:18] 2025-07-27 21:58:42,059 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:59:18] 2025-07-27 21:58:43,024 | INFO     | monitor loop #307: job 0:6747413047 is in state 'finished'
[2025-07-27 17:59:18] 2025-07-27 21:58:43,024 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:59:18] 2025-07-27 21:58:45,427 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 17:59:18] 2025-07-27 21:58:45,430 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2576.8955714285707
[2025-07-27 17:59:18] 2025-07-27 21:58:45,439 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747413047/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:59:18] 2025-07-27 21:58:45,439 | INFO     | extracted standard info from prmon json
[2025-07-27 17:59:18] 2025-07-27 21:58:45,439 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:59:18] 2025-07-27 21:58:45,439 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:59:18] 2025-07-27 21:58:45,440 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:59:18] 2025-07-27 21:58:45,440 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:59:18] 2025-07-27 21:58:45,441 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:59:18] 2025-07-27 21:58:45,441 | INFO     | sum of square deviations: 70364110.0
[2025-07-27 17:59:18] 2025-07-27 21:58:45,442 | INFO     | sum of deviations: -9027111474.0
[2025-07-27 17:59:18] 2025-07-27 21:58:45,442 | INFO     | mean x: 1753651551.0
[2025-07-27 17:59:18] 2025-07-27 21:58:45,442 | INFO     | mean y: 2495841.5081967213
[2025-07-27 17:59:18] 2025-07-27 21:58:45,442 | INFO     | -- intersect: 224980940639.9999
[2025-07-27 17:59:18] 2025-07-27 21:58:45,442 | INFO     | intersect: 224980940639.9999
[2025-07-27 17:59:18] 2025-07-27 21:58:45,442 | INFO     | chi2: 0.1506604323773081
[2025-07-27 17:59:18] 2025-07-27 21:58:45,442 | INFO     | -- intersect: 224980940639.9999
[2025-07-27 17:59:18] 2025-07-27 21:58:45,442 | INFO     | current memory leak: -128.29 B/s (using 61 data points, chi2=0.15)
[2025-07-27 17:59:18] 2025-07-27 21:58:45,443 | INFO     | could have reported an average CPU frequency of 2681 MHz (6 samples)
[2025-07-27 17:59:18] 2025-07-27 21:58:45,443 | INFO     | ..............................
[2025-07-27 17:59:18] 2025-07-27 21:58:45,443 | INFO     | . Timing measurements:
[2025-07-27 17:59:18] 2025-07-27 21:58:45,443 | INFO     | . get job = 0 s
[2025-07-27 17:59:18] 2025-07-27 21:58:45,443 | INFO     | . initial setup = 2 s
[2025-07-27 17:59:18] 2025-07-27 21:58:45,443 | INFO     | . payload setup = 6 s
[2025-07-27 17:59:18] 2025-07-27 21:58:45,443 | INFO     | . stage-in = 0 s
[2025-07-27 17:59:18] 2025-07-27 21:58:45,443 | INFO     | . payload execution = 4101 s
[2025-07-27 17:59:18] 2025-07-27 21:58:45,443 | INFO     | . stage-out = 0 s
[2025-07-27 17:59:18] 2025-07-27 21:58:45,443 | INFO     | . log creation = 0 s
[2025-07-27 17:59:18] 2025-07-27 21:58:45,443 | INFO     | ..............................
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | 
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | job summary report
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | --------------------------------------------------
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | PanDA job id: 6747413047
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | task id: 45743349
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | errors: (none)
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | pilot state: finished 
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | transexitcode: 0
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | exeerrorcode: 0
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | exeerrordiag: 
[2025-07-27 17:59:18] 2025-07-27 21:58:45,515 | INFO     | exitcode: 0
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | exitmsg: OK
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | cpuconsumptiontime: 44141 s
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | nevents: 400
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | neventsw: 0
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | pid: 3209233
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | pgrp: 3209233
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | corecount: 12
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | event service: False
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | sizes: {0: 2397475, 1: 2397475, 5: 2397765, 11: 2397821, 4111: 2423777, 4112: 2423776, 4113: 2432958, 4116: 2433014, 4121: 2433208}
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | --------------------------------------------------
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | 
[2025-07-27 17:59:18] 2025-07-27 21:58:45,516 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:59:18] 2025-07-27 21:58:45,532 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,532 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,532 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,532 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,533 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,534 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:59:18] 2025-07-27 21:58:45,534 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,534 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:59:18] 2025-07-27 21:58:45,534 | INFO     | job 6747413047 has completed (purged errors)
[2025-07-27 17:59:18] 2025-07-27 21:58:45,534 | INFO     | overall cleanup function is called
[2025-07-27 17:59:18] 2025-07-27 21:58:46,541 | INFO     | --- collectZombieJob: --- 10, [3209233]
[2025-07-27 17:59:18] 2025-07-27 21:58:46,541 | INFO     | zombie collector waiting for pid 3209233
[2025-07-27 17:59:18] 2025-07-27 21:58:46,541 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:59:18] 2025-07-27 21:58:46,541 | INFO     | collected zombie processes
[2025-07-27 17:59:18] 2025-07-27 21:58:46,541 | INFO     | will attempt to kill all subprocesses of pid=3209233
[2025-07-27 17:59:18] 2025-07-27 21:58:46,787 | INFO     | process IDs to be killed: [3209233] (in reverse order)
[2025-07-27 17:59:18] 2025-07-27 21:58:46,872 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:59:18] 2025-07-27 21:58:46,872 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:59:18] 2025-07-27 21:58:46,883 | INFO     | did not find any defunct processes belonging to 3209233
[2025-07-27 17:59:18] 2025-07-27 21:58:46,893 | INFO     | did not find any defunct processes belonging to 3209233
[2025-07-27 17:59:18] 2025-07-27 21:58:46,894 | INFO     | ready for new job
[2025-07-27 17:59:18] 2025-07-27 21:58:46,894 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:59:18] 2025-07-27 21:58:46,895 | INFO     | ***************************************
[2025-07-27 17:59:18] 2025-07-27 21:58:46,895 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:59:18] 2025-07-27 21:58:46,895 | INFO     | ***************************************
[2025-07-27 17:59:18] 2025-07-27 21:58:46,895 | INFO     | 
[2025-07-27 17:59:18] 2025-07-27 21:58:46,910 | INFO     | architecture information:
[2025-07-27 17:59:18] 2025-07-27 21:58:46,910 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:59:18] 2025-07-27 21:58:46,922 | INFO     | cat /etc/os-release:
[2025-07-27 17:59:18] NAME="CentOS Linux"
[2025-07-27 17:59:18] VERSION="7 (Core)"
[2025-07-27 17:59:18] ID="centos"
[2025-07-27 17:59:18] ID_LIKE="rhel fedora"
[2025-07-27 17:59:18] VERSION_ID="7"
[2025-07-27 17:59:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:59:18] ANSI_COLOR="0;31"
[2025-07-27 17:59:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:59:18] HOME_URL="https://www.centos.org/"
[2025-07-27 17:59:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:59:18] 
[2025-07-27 17:59:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:59:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:59:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:59:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:59:18] 
[2025-07-27 17:59:18] 2025-07-27 21:58:46,923 | INFO     | ***************************************
[2025-07-27 17:59:18] 2025-07-27 21:58:47,425 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:59:18] 2025-07-27 21:58:47,438 | INFO     | sufficient remaining disk space (76445384704 B)
[2025-07-27 17:59:18] 2025-07-27 21:58:47,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:59:18] 2025-07-27 21:58:47,439 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:59:18] 2025-07-27 21:58:47,439 | INFO     | update_server=False
[2025-07-27 17:59:18] 2025-07-27 21:58:47,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:59:18] 2025-07-27 21:58:47,439 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:59:18] 2025-07-27 21:58:47,439 | INFO     | aborting loop
[2025-07-27 17:59:18] 2025-07-27 21:58:47,440 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:59:18] 2025-07-27 21:58:47,441 | INFO     | all data control threads have been joined
[2025-07-27 17:59:18] 2025-07-27 21:58:47,891 | INFO     | all job control threads have been joined
[2025-07-27 17:59:18] 2025-07-27 21:58:48,116 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:59:18] 2025-07-27 21:58:48,444 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:48,444 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:48,445 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:48,446 | INFO     | [data] control thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:48,630 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:48,697 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:48,752 | INFO     | all payload control threads have been joined
[2025-07-27 17:59:18] 2025-07-27 21:58:48,896 | INFO     | [job] control thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:48,929 | INFO     | [job] validate thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:49,351 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:49,598 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:49,598 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:49,611 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:49,730 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:49,757 | INFO     | [payload] control thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:50,121 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:50,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:59:18] 2025-07-27 21:58:54,904 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:59:18] 2025-07-27 21:58:56,093 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140128140306240)>', '<ExcThread(monitor, started 140127644927744)>']
[2025-07-27 17:59:18] 2025-07-27 21:59:01,118 | INFO     | all workflow threads have been joined
[2025-07-27 17:59:18] 2025-07-27 21:59:01,118 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:59:18] 2025-07-27 21:59:01,119 | INFO     | traces error code: 0
[2025-07-27 17:59:18] 2025-07-27 21:59:01,119 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:59:18] 2025-07-27 21:59:17,785 | INFO     | PID=3201715 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:59:18] 2025-07-27 21:59:17,786 | INFO     | .. there are 13 such processes running
[2025-07-27 17:59:18] 2025-07-27 21:59:17,786 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:59:18] 2025-07-27 21:59:17,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:59:18] 2025-07-27 21:59:17,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:59:18] 2025-07-27 21:59:17,786 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:59:18] 2025-07-27 21:59:17,786 | INFO     | [monitor] control thread has ended
[2025-07-27 17:59:18] 2025-07-27 21:59:17,900 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:59:18] 2025-07-27 21:59:17,903 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:59:18] 2025-07-27 21:59:17,905 [wrapper] pilotpid: 3201715
[2025-07-27 17:59:18] 2025-07-27 21:59:17,907 [wrapper] Pilot exit status: 0
[2025-07-27 17:59:18] 2025-07-27 21:59:17,915 [wrapper] pandaids: 6747413047
[2025-07-27 17:59:18] 2025-07-27 21:59:17,972 [wrapper] cleanup supervisor_pilot 3402958 3201716
[2025-07-27 17:59:18] 2025-07-27 21:59:17,975 [wrapper] Test setup, not cleaning
[2025-07-27 17:59:18] 2025-07-27 21:59:17,977 [wrapper] apfmon messages muted
[2025-07-27 17:59:18] 2025-07-27 21:59:17,979 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:59:18] 2025-07-27 21:59:17,980 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:59:18]  *** Error codes and diagnostics ***
[2025-07-27 17:59:18]     "exeErrorCode": 0,
[2025-07-27 17:59:18]     "exeErrorDiag": "",
[2025-07-27 17:59:18]     "pilotErrorCode": 0,
[2025-07-27 17:59:18]     "pilotErrorDiag": "",
[2025-07-27 17:59:18]  *** Listing of results directory ***
[2025-07-27 17:59:18] total 355748
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 17:59:18] -rwx------. 1 boincer umatlas     36292 Jul 27 10:23 runpilot2-wrapper.sh
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:23 queuedata.json
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:59:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:49 run_atlas
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:49 job.xml
[2025-07-27 17:59:18] -rw-r--r--. 2 boincer umatlas 147306228 Jul 27 16:49 EVNT.45743347._002775.pool.root.1
[2025-07-27 17:59:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:49 start_atlas.sh
[2025-07-27 17:59:18] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:49 shared
[2025-07-27 17:59:18] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 16:49 input.tar.gz
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:49 boinc_lockfile
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 16:49 pandaJob.out
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas    980109 Jul 27 16:49 agis_schedconf.cvmfs.json
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:49 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:59:18] drwx------. 4 boincer umatlas      4096 Jul 27 16:49 pilot3
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 17:57 init_data.xml
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas 211553135 Jul 27 17:58 HITS.45743349._049930.pool.root.1
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:58 boinc_task_state.xml
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas        95 Jul 27 17:58 pilot_heartbeat.json
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas      1035 Jul 27 17:58 memory_monitor_summary.json
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas    360416 Jul 27 17:58 log.45743349._049930.job.log.tgz.1
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas      7824 Jul 27 17:58 heartbeat.json
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:59 boinc_mmap_file
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:59 wrapper_checkpoint.txt
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas       823 Jul 27 17:59 pilotlog.txt
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas    417574 Jul 27 17:59 log.45743349._049930.job.log.1
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas       357 Jul 27 17:59 output.list
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:59 runtime_log
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas    798720 Jul 27 17:59 result.tar.gz
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 17:59 runtime_log.err
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas       654 Jul 27 17:59 D6VLDmoSH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTXVLDmWcJNIo.diag
[2025-07-27 17:59:18] -rw-r--r--. 1 boincer umatlas     21794 Jul 27 17:59 stderr.txt
[2025-07-27 17:59:18] HITS file was successfully produced:
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas 211553135 Jul 27 17:58 shared/HITS.pool.root.1
[2025-07-27 17:59:18]  *** Contents of shared directory: ***
[2025-07-27 17:59:18] total 351784
[2025-07-27 17:59:18] -rw-r--r--. 2 boincer umatlas 147306228 Jul 27 16:49 ATLAS.root_0
[2025-07-27 17:59:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:49 start_atlas.sh
[2025-07-27 17:59:18] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 16:49 input.tar.gz
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas 211553135 Jul 27 17:58 HITS.pool.root.1
[2025-07-27 17:59:18] -rw-------. 1 boincer umatlas    798720 Jul 27 17:59 result.tar.gz
17:59:19 (3193399): run_atlas exited; CPU time 44184.415060
17:59:19 (3193399): called boinc_finish(0)

</stderr_txt>
]]>

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