Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
11:00:25 (1712204): wrapper (7.7.26015): starting
11:00:25 (1712204): wrapper: running run_atlas (--nthreads 3)
[2025-07-28 11:00:25] Arguments: --nthreads 3
[2025-07-28 11:00:25] Threads: 3
[2025-07-28 11:00:25] Checking for CVMFS
[2025-07-28 11:00:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 11:00:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 11:00:25] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 11:00:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 11:00:25] 2.9.2.0 3414332 9364 86544 148841 3 57 29873320 36864000 0 130560 0 6359757 99.989 340921 1987 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-28 11:00:25] CVMFS is ok
[2025-07-28 11:00:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 11:00:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 11:00:25] Further information can be found at the LHC@home message board.
[2025-07-28 11:00:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 11:00:25] Checking for apptainer binary...
[2025-07-28 11:00:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 11:00:25] Running /usr/bin/apptainer --version
[2025-07-28 11:00:25] apptainer version 1.3.6-4.2
[2025-07-28 11:00:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 11:00:25] thA371b
[2025-07-28 11:00:25] apptainer works
[2025-07-28 11:00:25] Set ATHENA_PROC_NUMBER=3
[2025-07-28 11:00:25] Set ATHENA_CORE_NUMBER=3
[2025-07-28 11:00:25] Starting ATLAS job with PandaID=6747376531
[2025-07-28 11:00:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 12:36:57]  *** The last 200 lines of the pilot log: ***
[2025-07-28 12:36:57]  is_tar=False
[2025-07-28 12:36:57]  lfn=log.45743349._047740.job.log.tgz.1
[2025-07-28 12:36:57]  mtime=0
[2025-07-28 12:36:57]  protocol_id=None
[2025-07-28 12:36:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 12:36:57]  replicas=None
[2025-07-28 12:36:57]  scope=mc23_13p6TeV
[2025-07-28 12:36:57]  status=None
[2025-07-28 12:36:57]  status_code=0
[2025-07-28 12:36:57]  storage_token=
[2025-07-28 12:36:57]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6747376531/log.45743349._047740.job.log.tgz.1
[2025-07-28 12:36:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/28/log.45743349._047740.job.log.tgz.1
[2025-07-28 12:36:57]  workdir=None
[2025-07-28 12:36:57] ]
[2025-07-28 12:36:57] 2025-07-28 10:36:20,113 | INFO     | transferring file log.45743349._047740.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6747376531/log.45743349._047740.job.log.tgz.1 to /local/data/boinc/
[2025-07-28 12:36:57] 2025-07-28 10:36:20,113 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6747376531/log.45743349._047740.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0477
[2025-07-28 12:36:57] 2025-07-28 10:36:20,126 | INFO     | adding to output.list: log.45743349._047740.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/28/log.45743349._047740.job.log.tg
[2025-07-28 12:36:57] 2025-07-28 10:36:20,127 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 12:36:57] 2025-07-28 10:36:20,127 | INFO     | summary of transferred files:
[2025-07-28 12:36:57] 2025-07-28 10:36:20,127 | INFO     |  -- lfn=log.45743349._047740.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 12:36:57] 2025-07-28 10:36:20,127 | INFO     | stage-out finished correctly
[2025-07-28 12:36:57] 2025-07-28 10:36:20,344 | INFO     | monitor loop #441: job 0:6747376531 is in state 'finished'
[2025-07-28 12:36:57] 2025-07-28 10:36:20,344 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:36:57] 2025-07-28 10:36:22,767 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 12:36:57] 2025-07-28 10:36:22,847 | INFO     | monitor loop #442: job 0:6747376531 is in state 'finished'
[2025-07-28 12:36:57] 2025-07-28 10:36:22,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:36:57] 2025-07-28 10:36:23,274 | INFO     | job 6747376531 has state=finished
[2025-07-28 12:36:57] 2025-07-28 10:36:23,274 | INFO     | preparing for final server update for job 6747376531 in state='finished'
[2025-07-28 12:36:57] 2025-07-28 10:36:23,274 | INFO     | this job has now completed (state=finished)
[2025-07-28 12:36:57] 2025-07-28 10:36:23,274 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 12:36:57] 2025-07-28 10:36:23,274 | INFO     | log transfer has been attempted: DONE
[2025-07-28 12:36:57] 2025-07-28 10:36:23,274 | INFO     | job 6747376531 has finished - writing final server update
[2025-07-28 12:36:57] 2025-07-28 10:36:23,275 | INFO     | total number of processed events: 400 (read)
[2025-07-28 12:36:57] 2025-07-28 10:36:23,275 | INFO     | executing command: lscpu
[2025-07-28 12:36:57] 2025-07-28 10:36:23,287 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 12:36:57] 2025-07-28 10:36:25,350 | INFO     | monitor loop #443: job 0:6747376531 is in state 'finished'
[2025-07-28 12:36:57] 2025-07-28 10:36:25,350 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:36:57] 2025-07-28 10:36:25,458 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 12:36:57] 2025-07-28 10:36:25,459 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3923.4616666666666
[2025-07-28 12:36:57] 2025-07-28 10:36:25,460 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6747376531/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 12:36:57] 2025-07-28 10:36:25,460 | INFO     | extracted standard info from prmon json
[2025-07-28 12:36:57] 2025-07-28 10:36:25,460 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 12:36:57] 2025-07-28 10:36:25,460 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 12:36:57] 2025-07-28 10:36:25,461 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 12:36:57] 2025-07-28 10:36:25,461 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 12:36:57] 2025-07-28 10:36:25,461 | INFO     | fitting pss+swap vs Time
[2025-07-28 12:36:57] 2025-07-28 10:36:25,461 | INFO     | sum of square deviations: 204163828.0
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | sum of deviations: -5018954157.0
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | mean x: 1753696178.0
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | mean y: 2382225.632183908
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | -- intersect: 43113450473.66735
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | intersect: 43113450473.66735
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | chi2: 0.13119166244745897
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | -- intersect: 43113450473.66735
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | current memory leak: -24.58 B/s (using 87 data points, chi2=0.13)
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | could have reported an average CPU frequency of 4096 MHz (7 samples)
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | ..............................
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | . Timing measurements:
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | . get job = 0 s
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | . initial setup = 1 s
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | . payload setup = 3 s
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | . stage-in = 0 s
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | . payload execution = 5727 s
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | . stage-out = 0 s
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | . log creation = 0 s
[2025-07-28 12:36:57] 2025-07-28 10:36:25,462 | INFO     | ..............................
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | 
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | job summary report
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | --------------------------------------------------
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | PanDA job id: 6747376531
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | task id: 45743349
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | errors: (none)
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | pilot state: finished 
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | transexitcode: 0
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | exeerrorcode: 0
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | exeerrordiag: 
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | exitcode: 0
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | exitmsg: OK
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | cpuconsumptiontime: 16516 s
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | nevents: 400
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | neventsw: 0
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | pid: 1722329
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | pgrp: 1722329
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | corecount: 3
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | event service: False
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | sizes: {0: 2397307, 1: 2397506, 3: 2397768, 11: 2397796, 5735: 2424610, 5736: 2433614, 5739: 2433798, 5742: 2433992}
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | --------------------------------------------------
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | 
[2025-07-28 12:36:57] 2025-07-28 10:36:25,493 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-28 12:36:57] 2025-07-28 10:36:25,504 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | job 6747376531 has completed (purged errors)
[2025-07-28 12:36:57] 2025-07-28 10:36:25,505 | INFO     | overall cleanup function is called
[2025-07-28 12:36:57] 2025-07-28 10:36:26,512 | INFO     | --- collectZombieJob: --- 10, [1722329]
[2025-07-28 12:36:57] 2025-07-28 10:36:26,512 | INFO     | zombie collector waiting for pid 1722329
[2025-07-28 12:36:57] 2025-07-28 10:36:26,512 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 12:36:57] 2025-07-28 10:36:26,512 | INFO     | collected zombie processes
[2025-07-28 12:36:57] 2025-07-28 10:36:26,512 | INFO     | will attempt to kill all subprocesses of pid=1722329
[2025-07-28 12:36:57] 2025-07-28 10:36:26,559 | INFO     | process IDs to be killed: [1722329] (in reverse order)
[2025-07-28 12:36:57] 2025-07-28 10:36:26,585 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 12:36:57] 2025-07-28 10:36:26,585 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 12:36:57] 2025-07-28 10:36:26,586 | INFO     | did not find any defunct processes belonging to 1722329
[2025-07-28 12:36:57] 2025-07-28 10:36:26,587 | INFO     | did not find any defunct processes belonging to 1722329
[2025-07-28 12:36:57] 2025-07-28 10:36:26,587 | INFO     | ready for new job
[2025-07-28 12:36:57] 2025-07-28 10:36:26,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 12:36:57] 2025-07-28 10:36:26,588 | INFO     | ***************************************
[2025-07-28 12:36:57] 2025-07-28 10:36:26,588 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 12:36:57] 2025-07-28 10:36:26,588 | INFO     | ***************************************
[2025-07-28 12:36:57] 2025-07-28 10:36:26,588 | INFO     | 
[2025-07-28 12:36:57] 2025-07-28 10:36:26,589 | INFO     | architecture information:
[2025-07-28 12:36:57] 2025-07-28 10:36:26,589 | INFO     | executing command: cat /etc/os-release
[2025-07-28 12:36:57] 2025-07-28 10:36:26,598 | INFO     | cat /etc/os-release:
[2025-07-28 12:36:57] NAME="CentOS Linux"
[2025-07-28 12:36:57] VERSION="7 (Core)"
[2025-07-28 12:36:57] ID="centos"
[2025-07-28 12:36:57] ID_LIKE="rhel fedora"
[2025-07-28 12:36:57] VERSION_ID="7"
[2025-07-28 12:36:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 12:36:57] ANSI_COLOR="0;31"
[2025-07-28 12:36:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 12:36:57] HOME_URL="https://www.centos.org/"
[2025-07-28 12:36:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 12:36:57] 
[2025-07-28 12:36:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 12:36:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 12:36:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 12:36:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 12:36:57] 
[2025-07-28 12:36:57] 2025-07-28 10:36:26,598 | INFO     | ***************************************
[2025-07-28 12:36:57] 2025-07-28 10:36:27,099 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-28 12:36:57] 2025-07-28 10:36:27,109 | INFO     | sufficient remaining disk space (230839812096 B)
[2025-07-28 12:36:57] 2025-07-28 10:36:27,109 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 12:36:57] 2025-07-28 10:36:27,109 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 12:36:57] 2025-07-28 10:36:27,109 | INFO     | update_server=False
[2025-07-28 12:36:57] 2025-07-28 10:36:27,109 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 12:36:57] 2025-07-28 10:36:27,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:36:57] 2025-07-28 10:36:27,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:36:57] 2025-07-28 10:36:27,109 | INFO     | aborting loop
[2025-07-28 12:36:57] 2025-07-28 10:36:27,544 | INFO     | all data control threads have been joined
[2025-07-28 12:36:57] 2025-07-28 10:36:27,814 | INFO     | all payload control threads have been joined
[2025-07-28 12:36:57] 2025-07-28 10:36:28,110 | INFO     | [job] retrieve thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:28,114 | INFO     | [job] queue monitor thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:28,115 | INFO     | [job] job monitor thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:28,131 | INFO     | [data] copytool_in thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:28,169 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 12:36:57] 2025-07-28 10:36:28,208 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:28,536 | INFO     | [payload] failed_post thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:28,548 | INFO     | [data] control thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:28,763 | INFO     | [job] validate thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:28,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 12:36:57] 2025-07-28 10:36:28,802 | INFO     | all job control threads have been joined
[2025-07-28 12:36:57] 2025-07-28 10:36:28,819 | INFO     | [payload] control thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:28,832 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:28,930 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:29,112 | INFO     | [payload] validate_post thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:29,807 | INFO     | [job] control thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:30,174 | INFO     | [data] copytool_out thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:32,804 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:37,186 | INFO     | job.realtimelogging is not enabled
[2025-07-28 12:36:57] 2025-07-28 10:36:38,190 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 12:36:57] 2025-07-28 10:36:38,731 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139797096441664)>', '<ExcThread(monitor, started 139796471076608)>']
[2025-07-28 12:36:57] 2025-07-28 10:36:43,752 | INFO     | all workflow threads have been joined
[2025-07-28 12:36:57] 2025-07-28 10:36:43,752 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 12:36:57] 2025-07-28 10:36:43,752 | INFO     | traces error code: 0
[2025-07-28 12:36:57] 2025-07-28 10:36:43,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 12:36:57] 2025-07-28 10:36:57,530 | INFO     | PID=1715846 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 12:36:57] 2025-07-28 10:36:57,530 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 12:36:57] 2025-07-28 10:36:57,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 12:36:57] 2025-07-28 10:36:57,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 12:36:57] 2025-07-28 10:36:57,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 12:36:57] 2025-07-28 10:36:57,530 | INFO     | [monitor] control thread has ended
[2025-07-28 12:36:57] 2025-07-28 10:36:57,578 [wrapper] ==== pilot stdout END ====
[2025-07-28 12:36:57] 2025-07-28 10:36:57,581 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 12:36:57] 2025-07-28 10:36:57,583 [wrapper] pilotpid: 1715846
[2025-07-28 12:36:57] 2025-07-28 10:36:57,585 [wrapper] Pilot exit status: 0
[2025-07-28 12:36:57] 2025-07-28 10:36:57,592 [wrapper] pandaids: 6747376531
[2025-07-28 12:36:57] 2025-07-28 10:36:57,609 [wrapper] cleanup supervisor_pilot 1735662 1715847
[2025-07-28 12:36:57] 2025-07-28 10:36:57,611 [wrapper] Test setup, not cleaning
[2025-07-28 12:36:57] 2025-07-28 10:36:57,613 [wrapper] apfmon messages muted
[2025-07-28 12:36:57] 2025-07-28 10:36:57,616 [wrapper] ==== wrapper stdout END ====
[2025-07-28 12:36:57] 2025-07-28 10:36:57,618 [wrapper] ==== wrapper stderr END ====
[2025-07-28 12:36:57]  *** Error codes and diagnostics ***
[2025-07-28 12:36:57]     "exeErrorCode": 0,
[2025-07-28 12:36:57]     "exeErrorDiag": "",
[2025-07-28 12:36:57]     "pilotErrorCode": 0,
[2025-07-28 12:36:57]     "pilotErrorDiag": "",
[2025-07-28 12:36:57]  *** Listing of results directory ***
[2025-07-28 12:36:57] total 353520
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc    530466 Jul 27 13:42 pilot3.tar.gz
[2025-07-28 12:36:57] -rwx------ 1 boinc boinc     36292 Jul 27 13:45 runpilot2-wrapper.sh
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc      5112 Jul 27 13:45 queuedata.json
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc       100 Jul 28 11:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 12:36:57] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 11:00 run_atlas
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc       105 Jul 28 11:00 job.xml
[2025-07-28 12:36:57] -rw-r--r-- 2 boinc boinc 146634853 Jul 28 11:00 EVNT.45743347._002649.pool.root.1
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc      6921 Jul 28 11:00 init_data.xml
[2025-07-28 12:36:57] drwxrwx--x 2 boinc boinc      4096 Jul 28 11:00 shared
[2025-07-28 12:36:57] -rw-r--r-- 2 boinc boinc    542893 Jul 28 11:00 input.tar.gz
[2025-07-28 12:36:57] -rw-r--r-- 2 boinc boinc     15095 Jul 28 11:00 start_atlas.sh
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc         0 Jul 28 11:00 boinc_lockfile
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc      2563 Jul 28 11:00 pandaJob.out
[2025-07-28 12:36:57] -rw------- 1 boinc boinc    978452 Jul 28 11:00 agis_schedconf.cvmfs.json
[2025-07-28 12:36:57] -rw------- 1 boinc boinc   1593052 Jul 28 11:00 agis_ddmendpoints.agis.ALL.json
[2025-07-28 12:36:57] drwx------ 4 boinc boinc      4096 Jul 28 11:00 pilot3
[2025-07-28 12:36:57] -rw------- 1 boinc boinc        95 Jul 28 12:35 pilot_heartbeat.json
[2025-07-28 12:36:57] -rw------- 1 boinc boinc 209913728 Jul 28 12:36 HITS.45743349._047740.pool.root.1
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc       529 Jul 28 12:36 boinc_task_state.xml
[2025-07-28 12:36:57] -rw------- 1 boinc boinc      1018 Jul 28 12:36 memory_monitor_summary.json
[2025-07-28 12:36:57] -rw------- 1 boinc boinc    233985 Jul 28 12:36 log.45743349._047740.job.log.tgz.1
[2025-07-28 12:36:57] -rw------- 1 boinc boinc      7760 Jul 28 12:36 heartbeat.json
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc        27 Jul 28 12:36 wrapper_checkpoint.txt
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc      8192 Jul 28 12:36 boinc_mmap_file
[2025-07-28 12:36:57] -rw------- 1 boinc boinc       747 Jul 28 12:36 pilotlog.txt
[2025-07-28 12:36:57] -rw------- 1 boinc boinc    553008 Jul 28 12:36 log.45743349._047740.job.log.1
[2025-07-28 12:36:57] -rw------- 1 boinc boinc       357 Jul 28 12:36 output.list
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc       620 Jul 28 12:36 runtime_log
[2025-07-28 12:36:57] -rw------- 1 boinc boinc    808960 Jul 28 12:36 result.tar.gz
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc      8739 Jul 28 12:36 runtime_log.err
[2025-07-28 12:36:57] -rw------- 1 boinc boinc       660 Jul 28 12:36 FsgNDmP0E07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmE9ULDmPKxEgn.diag
[2025-07-28 12:36:57] -rw-r--r-- 1 boinc boinc     21582 Jul 28 12:36 stderr.txt
[2025-07-28 12:36:57] HITS file was successfully produced:
[2025-07-28 12:36:57] -rw------- 1 boinc boinc 209913728 Jul 28 12:36 shared/HITS.pool.root.1
[2025-07-28 12:36:57]  *** Contents of shared directory: ***
[2025-07-28 12:36:57] total 349544
[2025-07-28 12:36:57] -rw-r--r-- 2 boinc boinc 146634853 Jul 28 11:00 ATLAS.root_0
[2025-07-28 12:36:57] -rw-r--r-- 2 boinc boinc    542893 Jul 28 11:00 input.tar.gz
[2025-07-28 12:36:57] -rw-r--r-- 2 boinc boinc     15095 Jul 28 11:00 start_atlas.sh
[2025-07-28 12:36:57] -rw------- 1 boinc boinc 209913728 Jul 28 12:36 HITS.pool.root.1
[2025-07-28 12:36:57] -rw------- 1 boinc boinc    808960 Jul 28 12:36 result.tar.gz
12:36:59 (1712204): run_atlas exited; CPU time 16539.738420
12:36:59 (1712204): called boinc_finish(0)

</stderr_txt>
]]>

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