Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:47:34 (852486): wrapper (7.7.26015): starting
16:47:34 (852486): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:47:34] Arguments: --nthreads 12
[2025-07-27 16:47:34] Threads: 12
[2025-07-27 16:47:34] Checking for CVMFS
[2025-07-27 16:47:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:47:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:47:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:47:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:47:35] 2.12.6.0 1263230 18864 335376 148823 0 142 16720839 32935936 8382 16776704 0 36897833 99.599 59375148 28921 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 16:47:35] CVMFS is ok
[2025-07-27 16:47:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:47:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:47:35] Further information can be found at the LHC@home message board.
[2025-07-27 16:47:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:47:35] Checking for apptainer binary...
[2025-07-27 16:47:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:47:35] Running /usr/bin/apptainer --version
[2025-07-27 16:47:35] apptainer version 1.4.1-1.el9
[2025-07-27 16:47:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:47:35] c6-5-7-2.aglt2.org
[2025-07-27 16:47:35] apptainer works
[2025-07-27 16:47:35] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:47:35] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:47:35] Starting ATLAS job with PandaID=6747412893
[2025-07-27 16:47:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:07:05]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:07:05]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747412893/log.45743349._049776.job.log.tgz.1
[2025-07-27 18:07:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/ea/log.45743349._049776.job.log.tgz.1
[2025-07-27 18:07:05]  workdir=None
[2025-07-27 18:07:05] ]
[2025-07-27 18:07:05] 2025-07-27 22:06:26,305 | INFO     | transferring file log.45743349._049776.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747412893/log.45743349._049776.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 18:07:05] 2025-07-27 22:06:26,305 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747412893/log.45743349._049776.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049776.job
[2025-07-27 18:07:05] 2025-07-27 22:06:26,332 | INFO     | adding to output.list: log.45743349._049776.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/ea/log.45743349._049776.job.log.tg
[2025-07-27 18:07:05] 2025-07-27 22:06:26,333 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:07:05] 2025-07-27 22:06:26,333 | INFO     | summary of transferred files:
[2025-07-27 18:07:05] 2025-07-27 22:06:26,333 | INFO     |  -- lfn=log.45743349._049776.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:07:05] 2025-07-27 22:06:26,334 | INFO     | stage-out finished correctly
[2025-07-27 18:07:05] 2025-07-27 22:06:27,694 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:07:05] 2025-07-27 22:06:27,766 | INFO     | job 6747412893 has state=finished
[2025-07-27 18:07:05] 2025-07-27 22:06:27,766 | INFO     | preparing for final server update for job 6747412893 in state='finished'
[2025-07-27 18:07:05] 2025-07-27 22:06:27,767 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:07:05] 2025-07-27 22:06:27,767 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:07:05] 2025-07-27 22:06:27,767 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:07:05] 2025-07-27 22:06:27,767 | INFO     | job 6747412893 has finished - writing final server update
[2025-07-27 18:07:05] 2025-07-27 22:06:27,767 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:07:05] 2025-07-27 22:06:27,768 | INFO     | executing command: lscpu
[2025-07-27 18:07:05] 2025-07-27 22:06:27,831 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:07:05] 2025-07-27 22:06:30,594 | WARNING  | process 866317 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 18:07:05] 2025-07-27 22:06:30,595 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412893/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:07:05] 2025-07-27 22:06:30,596 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412893/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:07:05] 2025-07-27 22:06:30,598 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3838472 B
[2025-07-27 18:07:05] 2025-07-27 22:06:30,598 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15789 B
[2025-07-27 18:07:05] 2025-07-27 22:06:30,598 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 18:07:05] 2025-07-27 22:06:33,203 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 18:07:05] 2025-07-27 22:06:33,226 | INFO     | sufficient remaining disk space (76371984384 B)
[2025-07-27 18:07:05] 2025-07-27 22:06:33,227 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 18:07:05] 2025-07-27 22:06:33,230 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2663.202928571428
[2025-07-27 18:07:05] 2025-07-27 22:06:33,232 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6747412893: 4137325 B (within 2537553920 B limit)
[2025-07-27 18:07:05] 2025-07-27 22:06:33,233 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6747412893/HITS.45743349._049776.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 18:07:05] 2025-07-27 22:06:33,233 | INFO     | total size of present files: 0 B (workdir size: 4137325 B)
[2025-07-27 18:07:05] 2025-07-27 22:06:33,233 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6747412893/HITS.45743349._049776.pool.root.1 since it does not exist
[2025-07-27 18:07:05] 2025-07-27 22:06:33,245 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412893/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:07:05] 2025-07-27 22:06:33,246 | INFO     | extracted standard info from prmon json
[2025-07-27 18:07:05] 2025-07-27 22:06:33,247 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:07:05] 2025-07-27 22:06:33,247 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:07:05] 2025-07-27 22:06:33,248 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:07:05] 2025-07-27 22:06:33,248 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:07:05] 2025-07-27 22:06:33,251 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:07:05] 2025-07-27 22:06:33,251 | INFO     | sum of square deviations: 106336877.5
[2025-07-27 18:07:05] 2025-07-27 22:06:33,252 | INFO     | sum of deviations: -9398261551.5
[2025-07-27 18:07:05] 2025-07-27 22:06:33,252 | INFO     | mean x: 1753651711.5
[2025-07-27 18:07:05] 2025-07-27 22:06:33,252 | INFO     | mean y: 2491853.4714285713
[2025-07-27 18:07:05] 2025-07-27 22:06:33,252 | INFO     | -- intersect: 154993665587.27438
[2025-07-27 18:07:05] 2025-07-27 22:06:33,252 | INFO     | intersect: 154993665587.27438
[2025-07-27 18:07:05] 2025-07-27 22:06:33,253 | INFO     | chi2: 0.22581392150926527
[2025-07-27 18:07:05] 2025-07-27 22:06:33,253 | INFO     | -- intersect: 154993665587.27438
[2025-07-27 18:07:05] 2025-07-27 22:06:33,253 | INFO     | current memory leak: -88.38 B/s (using 70 data points, chi2=0.23)
[2025-07-27 18:07:05] 2025-07-27 22:06:33,254 | INFO     | could have reported an average CPU frequency of 2685 MHz (6 samples)
[2025-07-27 18:07:05] 2025-07-27 22:06:33,254 | INFO     | ..............................
[2025-07-27 18:07:05] 2025-07-27 22:06:33,254 | INFO     | . Timing measurements:
[2025-07-27 18:07:05] 2025-07-27 22:06:33,254 | INFO     | . get job = 0 s
[2025-07-27 18:07:05] 2025-07-27 22:06:33,254 | INFO     | . initial setup = 2 s
[2025-07-27 18:07:05] 2025-07-27 22:06:33,254 | INFO     | . payload setup = 9 s
[2025-07-27 18:07:05] 2025-07-27 22:06:33,254 | INFO     | . stage-in = 0 s
[2025-07-27 18:07:05] 2025-07-27 22:06:33,255 | INFO     | . payload execution = 4685 s
[2025-07-27 18:07:05] 2025-07-27 22:06:33,255 | INFO     | . stage-out = 1 s
[2025-07-27 18:07:05] 2025-07-27 22:06:33,255 | INFO     | . log creation = 0 s
[2025-07-27 18:07:05] 2025-07-27 22:06:33,255 | INFO     | ..............................
[2025-07-27 18:07:05] 2025-07-27 22:06:33,367 | INFO     | 
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | job summary report
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | --------------------------------------------------
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | PanDA job id: 6747412893
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | task id: 45743349
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | errors: (none)
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | pilot state: finished 
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | transexitcode: 0
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | exeerrorcode: 0
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | exeerrordiag: 
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | exitcode: 0
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | exitmsg: OK
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | cpuconsumptiontime: 47934 s
[2025-07-27 18:07:05] 2025-07-27 22:06:33,368 | INFO     | nevents: 400
[2025-07-27 18:07:05] 2025-07-27 22:06:33,369 | INFO     | neventsw: 0
[2025-07-27 18:07:05] 2025-07-27 22:06:33,369 | INFO     | pid: 866317
[2025-07-27 18:07:05] 2025-07-27 22:06:33,369 | INFO     | pgrp: 866317
[2025-07-27 18:07:05] 2025-07-27 22:06:33,369 | INFO     | corecount: 12
[2025-07-27 18:07:05] 2025-07-27 22:06:33,369 | INFO     | event service: False
[2025-07-27 18:07:05] 2025-07-27 22:06:33,369 | INFO     | sizes: {0: 2397304, 1: 2397503, 6: 2397765, 11: 2397793, 4698: 2423870, 4699: 2432868, 4701: 2433052, 4706: 2433274}
[2025-07-27 18:07:05] 2025-07-27 22:06:33,369 | INFO     | --------------------------------------------------
[2025-07-27 18:07:05] 2025-07-27 22:06:33,369 | INFO     | 
[2025-07-27 18:07:05] 2025-07-27 22:06:33,369 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 18:07:05] 2025-07-27 22:06:33,394 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,394 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,394 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,394 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,394 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,394 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,394 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,395 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:07:05] 2025-07-27 22:06:33,396 | INFO     | job 6747412893 has completed (purged errors)
[2025-07-27 18:07:05] 2025-07-27 22:06:33,396 | INFO     | overall cleanup function is called
[2025-07-27 18:07:05] 2025-07-27 22:06:33,624 | INFO     | number of running child processes to parent process 866317: 1
[2025-07-27 18:07:05] 2025-07-27 22:06:33,624 | INFO     | maximum number of monitored processes: 6
[2025-07-27 18:07:05] 2025-07-27 22:06:33,624 | INFO     | aborting job monitoring since job object (job id=6747412893) has expired
[2025-07-27 18:07:05] 2025-07-27 22:06:34,406 | INFO     | --- collectZombieJob: --- 10, [866317]
[2025-07-27 18:07:05] 2025-07-27 22:06:34,406 | INFO     | zombie collector waiting for pid 866317
[2025-07-27 18:07:05] 2025-07-27 22:06:34,407 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:07:05] 2025-07-27 22:06:34,407 | INFO     | collected zombie processes
[2025-07-27 18:07:05] 2025-07-27 22:06:34,407 | INFO     | will attempt to kill all subprocesses of pid=866317
[2025-07-27 18:07:05] 2025-07-27 22:06:34,685 | INFO     | process IDs to be killed: [866317] (in reverse order)
[2025-07-27 18:07:05] 2025-07-27 22:06:34,790 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:07:05] 2025-07-27 22:06:34,791 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:07:05] 2025-07-27 22:06:34,801 | INFO     | did not find any defunct processes belonging to 866317
[2025-07-27 18:07:05] 2025-07-27 22:06:34,812 | INFO     | did not find any defunct processes belonging to 866317
[2025-07-27 18:07:05] 2025-07-27 22:06:34,812 | INFO     | ready for new job
[2025-07-27 18:07:05] 2025-07-27 22:06:34,813 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:07:05] 2025-07-27 22:06:34,815 | INFO     | ***************************************
[2025-07-27 18:07:05] 2025-07-27 22:06:34,815 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:07:05] 2025-07-27 22:06:34,815 | INFO     | ***************************************
[2025-07-27 18:07:05] 2025-07-27 22:06:34,815 | INFO     | 
[2025-07-27 18:07:05] 2025-07-27 22:06:34,831 | INFO     | architecture information:
[2025-07-27 18:07:05] 2025-07-27 22:06:34,832 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:07:05] 2025-07-27 22:06:34,845 | INFO     | cat /etc/os-release:
[2025-07-27 18:07:05] NAME="CentOS Linux"
[2025-07-27 18:07:05] VERSION="7 (Core)"
[2025-07-27 18:07:05] ID="centos"
[2025-07-27 18:07:05] ID_LIKE="rhel fedora"
[2025-07-27 18:07:05] VERSION_ID="7"
[2025-07-27 18:07:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:07:05] ANSI_COLOR="0;31"
[2025-07-27 18:07:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:07:05] HOME_URL="https://www.centos.org/"
[2025-07-27 18:07:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:07:05] 
[2025-07-27 18:07:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:07:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:07:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:07:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:07:05] 
[2025-07-27 18:07:05] 2025-07-27 22:06:34,845 | INFO     | ***************************************
[2025-07-27 18:07:05] 2025-07-27 22:06:35,348 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 18:07:05] 2025-07-27 22:06:35,370 | INFO     | sufficient remaining disk space (76377227264 B)
[2025-07-27 18:07:05] 2025-07-27 22:06:35,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:07:05] 2025-07-27 22:06:35,371 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:07:05] 2025-07-27 22:06:35,371 | INFO     | update_server=False
[2025-07-27 18:07:05] 2025-07-27 22:06:35,371 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:07:05] 2025-07-27 22:06:35,372 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:07:05] 2025-07-27 22:06:35,372 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:07:05] 2025-07-27 22:06:35,372 | INFO     | aborting loop
[2025-07-27 18:07:05] 2025-07-27 22:06:35,373 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:07:05] 2025-07-27 22:06:35,547 | INFO     | all data control threads have been joined
[2025-07-27 18:07:05] 2025-07-27 22:06:35,977 | INFO     | all payload control threads have been joined
[2025-07-27 18:07:05] 2025-07-27 22:06:36,291 | INFO     | all job control threads have been joined
[2025-07-27 18:07:05] 2025-07-27 22:06:36,377 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:36,377 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:36,378 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:36,439 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:36,514 | INFO     | [job] validate thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:36,553 | INFO     | [data] control thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:36,823 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:36,827 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:36,982 | INFO     | [payload] control thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:37,234 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:37,238 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:37,296 | INFO     | [job] control thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:37,377 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:37,571 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:38,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:07:05] 2025-07-27 22:06:42,300 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:45,483 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:07:05] 2025-07-27 22:06:46,489 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:07:05] 2025-07-27 22:06:47,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663331481408)>', '<ExcThread(monitor, started 139662454675200)>']
[2025-07-27 18:07:05] 2025-07-27 22:06:52,068 | INFO     | all workflow threads have been joined
[2025-07-27 18:07:05] 2025-07-27 22:06:52,069 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:07:05] 2025-07-27 22:06:52,069 | INFO     | traces error code: 0
[2025-07-27 18:07:05] 2025-07-27 22:06:52,070 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:07:05] 2025-07-27 22:07:05,529 | INFO     | PID=856712 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 18:07:05] 2025-07-27 22:07:05,530 | INFO     | .. there are 13 such processes running
[2025-07-27 18:07:05] 2025-07-27 22:07:05,530 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:07:05] 2025-07-27 22:07:05,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:07:05] 2025-07-27 22:07:05,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:07:05] 2025-07-27 22:07:05,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:07:05] 2025-07-27 22:07:05,531 | INFO     | [monitor] control thread has ended
[2025-07-27 18:07:05] 2025-07-27 22:07:05,746 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:07:05] 2025-07-27 22:07:05,750 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:07:05] 2025-07-27 22:07:05,754 [wrapper] pilotpid: 856712
[2025-07-27 18:07:05] 2025-07-27 22:07:05,758 [wrapper] Pilot exit status: 0
[2025-07-27 18:07:05] 2025-07-27 22:07:05,773 [wrapper] pandaids: 6747412893
[2025-07-27 18:07:05] 2025-07-27 22:07:05,843 [wrapper] cleanup supervisor_pilot 1135511 856713
[2025-07-27 18:07:05] 2025-07-27 22:07:05,847 [wrapper] Test setup, not cleaning
[2025-07-27 18:07:05] 2025-07-27 22:07:05,851 [wrapper] apfmon messages muted
[2025-07-27 18:07:05] 2025-07-27 22:07:05,855 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:07:05] 2025-07-27 22:07:05,860 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:07:05]  *** Error codes and diagnostics ***
[2025-07-27 18:07:05]     "exeErrorCode": 0,
[2025-07-27 18:07:05]     "exeErrorDiag": "",
[2025-07-27 18:07:05]     "pilotErrorCode": 0,
[2025-07-27 18:07:05]     "pilotErrorDiag": "",
[2025-07-27 18:07:05]  *** Listing of results directory ***
[2025-07-27 18:07:05] total 430836
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 18:07:05] -rwx------. 1 boincer umatlas     36292 Jul 27 10:18 runpilot2-wrapper.sh
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:18 queuedata.json
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:07:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:47 run_atlas
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:47 job.xml
[2025-07-27 18:07:05] -rw-r--r--. 2 boincer umatlas 228182311 Jul 27 16:47 EVNT.45743347._002767.pool.root.1
[2025-07-27 18:07:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:47 start_atlas.sh
[2025-07-27 18:07:05] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:47 shared
[2025-07-27 18:07:05] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 16:47 input.tar.gz
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:47 boinc_lockfile
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 16:47 pandaJob.out
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas    980109 Jul 27 16:47 agis_schedconf.cvmfs.json
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:47 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:07:05] drwx------. 4 boincer umatlas      4096 Jul 27 16:47 pilot3
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 18:04 init_data.xml
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas       530 Jul 27 18:05 boinc_task_state.xml
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas 207476439 Jul 27 18:05 HITS.45743349._049776.pool.root.1
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas        95 Jul 27 18:06 pilot_heartbeat.json
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas      1038 Jul 27 18:06 memory_monitor_summary.json
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas    356655 Jul 27 18:06 log.45743349._049776.job.log.tgz.1
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas      7824 Jul 27 18:06 heartbeat.json
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:06 boinc_mmap_file
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas        27 Jul 27 18:06 wrapper_checkpoint.txt
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas       822 Jul 27 18:07 pilotlog.txt
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas    463951 Jul 27 18:07 log.45743349._049776.job.log.1
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas       357 Jul 27 18:07 output.list
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:07 runtime_log
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas    839680 Jul 27 18:07 result.tar.gz
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas       654 Jul 27 18:07 yL6KDmlNH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFVVLDmJzpxEn.diag
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 18:07 runtime_log.err
[2025-07-27 18:07:05] -rw-r--r--. 1 boincer umatlas     22562 Jul 27 18:07 stderr.txt
[2025-07-27 18:07:05] HITS file was successfully produced:
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas 207476439 Jul 27 18:05 shared/HITS.pool.root.1
[2025-07-27 18:07:05]  *** Contents of shared directory: ***
[2025-07-27 18:07:05] total 426824
[2025-07-27 18:07:05] -rw-r--r--. 2 boincer umatlas 228182311 Jul 27 16:47 ATLAS.root_0
[2025-07-27 18:07:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:47 start_atlas.sh
[2025-07-27 18:07:05] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 16:47 input.tar.gz
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas 207476439 Jul 27 18:05 HITS.pool.root.1
[2025-07-27 18:07:05] -rw-------. 1 boincer umatlas    839680 Jul 27 18:07 result.tar.gz
18:07:07 (852486): run_atlas exited; CPU time 48020.955072
18:07:07 (852486): called boinc_finish(0)

</stderr_txt>
]]>

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