Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:56:14 (2060558): wrapper (7.7.26015): starting
07:56:14 (2060558): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 07:56:14] Arguments: --nthreads 6
[2025-07-28 07:56:14] Threads: 6
[2025-07-28 07:56:14] Checking for CVMFS
[2025-07-28 07:56:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 07:56:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 07:56:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 07:56:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 07:56:15] 2.11.5.0 2723278 4403 76168 148827 2 187 52220568 52428801 1090 130560 0 9787553 99.997 153932 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 07:56:15] CVMFS is ok
[2025-07-28 07:56:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 07:56:15] Checking for apptainer binary...
[2025-07-28 07:56:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 07:56:15] Running /usr/bin/apptainer --version
[2025-07-28 07:56:15] apptainer version 1.3.5-1.el9
[2025-07-28 07:56:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 07:56:15] testio008
[2025-07-28 07:56:15] apptainer works
[2025-07-28 07:56:15] Set ATHENA_PROC_NUMBER=6
[2025-07-28 07:56:15] Set ATHENA_CORE_NUMBER=6
[2025-07-28 07:56:15] Starting ATLAS job with PandaID=6747413224
[2025-07-28 07:56:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 09:25:12]  *** The last 200 lines of the pilot log: ***
[2025-07-28 09:25:12]  is_tar=False
[2025-07-28 09:25:12]  lfn=log.45743349._049998.job.log.tgz.1
[2025-07-28 09:25:12]  mtime=0
[2025-07-28 09:25:12]  protocol_id=None
[2025-07-28 09:25:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 09:25:12]  replicas=None
[2025-07-28 09:25:12]  scope=mc23_13p6TeV
[2025-07-28 09:25:12]  status=None
[2025-07-28 09:25:12]  status_code=0
[2025-07-28 09:25:12]  storage_token=
[2025-07-28 09:25:12]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6747413224/log.45743349._049998.job.log.tgz.1
[2025-07-28 09:25:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/fa/log.45743349._049998.job.log.tgz.1
[2025-07-28 09:25:12]  workdir=None
[2025-07-28 09:25:12] ]
[2025-07-28 09:25:12] 2025-07-28 00:24:32,354 | INFO     | transferring file log.45743349._049998.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6747413224/log.45743349._049998.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 09:25:12] 2025-07-28 00:24:32,354 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6747413224/log.45743349._049998.job.log.tgz.1 /var/lib/boinc/slots/3/log.45743349._049998.job
[2025-07-28 09:25:12] 2025-07-28 00:24:32,361 | INFO     | adding to output.list: log.45743349._049998.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/fa/log.45743349._049998.job.log.tg
[2025-07-28 09:25:12] 2025-07-28 00:24:32,361 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 09:25:12] 2025-07-28 00:24:32,362 | INFO     | summary of transferred files:
[2025-07-28 09:25:12] 2025-07-28 00:24:32,362 | INFO     |  -- lfn=log.45743349._049998.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 09:25:12] 2025-07-28 00:24:32,362 | INFO     | stage-out finished correctly
[2025-07-28 09:25:12] 2025-07-28 00:24:33,893 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 09:25:12] 2025-07-28 00:24:34,087 | INFO     | monitor loop #397: job 0:6747413224 is in state 'finished'
[2025-07-28 09:25:12] 2025-07-28 00:24:34,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:12] 2025-07-28 00:24:34,400 | INFO     | job 6747413224 has state=finished
[2025-07-28 09:25:12] 2025-07-28 00:24:34,400 | INFO     | preparing for final server update for job 6747413224 in state='finished'
[2025-07-28 09:25:12] 2025-07-28 00:24:34,400 | INFO     | this job has now completed (state=finished)
[2025-07-28 09:25:12] 2025-07-28 00:24:34,400 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 09:25:12] 2025-07-28 00:24:34,401 | INFO     | log transfer has been attempted: DONE
[2025-07-28 09:25:12] 2025-07-28 00:24:34,401 | INFO     | job 6747413224 has finished - writing final server update
[2025-07-28 09:25:12] 2025-07-28 00:24:34,401 | INFO     | total number of processed events: 400 (read)
[2025-07-28 09:25:12] 2025-07-28 00:24:34,401 | INFO     | executing command: lscpu
[2025-07-28 09:25:12] 2025-07-28 00:24:34,410 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 09:25:12] 2025-07-28 00:24:36,590 | INFO     | monitor loop #398: job 0:6747413224 is in state 'finished'
[2025-07-28 09:25:12] 2025-07-28 00:24:36,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:12] 2025-07-28 00:24:39,093 | INFO     | monitor loop #399: job 0:6747413224 is in state 'finished'
[2025-07-28 09:25:12] 2025-07-28 00:24:39,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:12] 2025-07-28 00:24:40,652 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 09:25:12] 2025-07-28 00:24:40,653 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 3540.0505999999996
[2025-07-28 09:25:12] 2025-07-28 00:24:40,654 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6747413224/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 09:25:12] 2025-07-28 00:24:40,654 | INFO     | extracted standard info from prmon json
[2025-07-28 09:25:12] 2025-07-28 00:24:40,654 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 09:25:12] 2025-07-28 00:24:40,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 09:25:12] 2025-07-28 00:24:40,654 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 09:25:12] 2025-07-28 00:24:40,654 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | fitting pss+swap vs Time
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | sum of square deviations: 158737860.0
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | sum of deviations: 15974147286.999998
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | mean x: 1753659710.5
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | mean y: 2365948.55
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | -- intersect: -176472348444.1272
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | intersect: -176472348444.1272
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | chi2: 1.4150449661402829
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | -- intersect: -176472348444.1272
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | current memory leak: 100.63 B/s (using 80 data points, chi2=1.42)
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | could have reported an average CPU frequency of 3158 MHz (6 samples)
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | ..............................
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | . Timing measurements:
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | . get job = 0 s
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | . initial setup = 3 s
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | . payload setup = 1 s
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | . stage-in = 0 s
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | . payload execution = 5272 s
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | . stage-out = 0 s
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | . log creation = 0 s
[2025-07-28 09:25:12] 2025-07-28 00:24:40,655 | INFO     | ..............................
[2025-07-28 09:25:12] 2025-07-28 00:24:40,678 | INFO     | 
[2025-07-28 09:25:12] 2025-07-28 00:24:40,678 | INFO     | job summary report
[2025-07-28 09:25:12] 2025-07-28 00:24:40,678 | INFO     | --------------------------------------------------
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | PanDA job id: 6747413224
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | task id: 45743349
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | errors: (none)
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | pilot state: finished 
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | transexitcode: 0
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | exeerrorcode: 0
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | exeerrordiag: 
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | exitcode: 0
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | exitmsg: OK
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | cpuconsumptiontime: 26914 s
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | nevents: 400
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | neventsw: 0
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | pid: 2072972
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | pgrp: 2072972
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | corecount: 6
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | event service: False
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | sizes: {0: 2397359, 1: 2397501, 2: 2397763, 11: 2397791, 5278: 2424327, 5279: 2433325, 5281: 2433509, 5287: 2433703}
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | --------------------------------------------------
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | 
[2025-07-28 09:25:12] 2025-07-28 00:24:40,679 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | job 6747413224 has completed (purged errors)
[2025-07-28 09:25:12] 2025-07-28 00:24:40,686 | INFO     | overall cleanup function is called
[2025-07-28 09:25:12] 2025-07-28 00:24:41,691 | INFO     | --- collectZombieJob: --- 10, [2072972]
[2025-07-28 09:25:12] 2025-07-28 00:24:41,691 | INFO     | zombie collector waiting for pid 2072972
[2025-07-28 09:25:12] 2025-07-28 00:24:41,691 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 09:25:12] 2025-07-28 00:24:41,691 | INFO     | collected zombie processes
[2025-07-28 09:25:12] 2025-07-28 00:24:41,691 | INFO     | will attempt to kill all subprocesses of pid=2072972
[2025-07-28 09:25:12] 2025-07-28 00:24:41,714 | INFO     | process IDs to be killed: [2072972] (in reverse order)
[2025-07-28 09:25:12] 2025-07-28 00:24:41,732 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 09:25:12] 2025-07-28 00:24:41,732 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 09:25:12] 2025-07-28 00:24:41,733 | INFO     | did not find any defunct processes belonging to 2072972
[2025-07-28 09:25:12] 2025-07-28 00:24:41,734 | INFO     | did not find any defunct processes belonging to 2072972
[2025-07-28 09:25:12] 2025-07-28 00:24:41,735 | INFO     | ready for new job
[2025-07-28 09:25:12] 2025-07-28 00:24:41,735 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 09:25:12] 2025-07-28 00:24:41,735 | INFO     | ***************************************
[2025-07-28 09:25:12] 2025-07-28 00:24:41,735 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 09:25:12] 2025-07-28 00:24:41,735 | INFO     | ***************************************
[2025-07-28 09:25:12] 2025-07-28 00:24:41,735 | INFO     | 
[2025-07-28 09:25:12] 2025-07-28 00:24:41,736 | INFO     | architecture information:
[2025-07-28 09:25:12] 2025-07-28 00:24:41,736 | INFO     | executing command: cat /etc/os-release
[2025-07-28 09:25:12] 2025-07-28 00:24:41,742 | INFO     | cat /etc/os-release:
[2025-07-28 09:25:12] NAME="CentOS Linux"
[2025-07-28 09:25:12] VERSION="7 (Core)"
[2025-07-28 09:25:12] ID="centos"
[2025-07-28 09:25:12] ID_LIKE="rhel fedora"
[2025-07-28 09:25:12] VERSION_ID="7"
[2025-07-28 09:25:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 09:25:12] ANSI_COLOR="0;31"
[2025-07-28 09:25:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 09:25:12] HOME_URL="https://www.centos.org/"
[2025-07-28 09:25:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 09:25:12] 
[2025-07-28 09:25:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 09:25:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 09:25:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 09:25:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 09:25:12] 
[2025-07-28 09:25:12] 2025-07-28 00:24:41,742 | INFO     | ***************************************
[2025-07-28 09:25:12] 2025-07-28 00:24:42,244 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-07-28 09:25:12] 2025-07-28 00:24:42,250 | INFO     | sufficient remaining disk space (271261368320 B)
[2025-07-28 09:25:12] 2025-07-28 00:24:42,250 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 09:25:12] 2025-07-28 00:24:42,250 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 09:25:12] 2025-07-28 00:24:42,250 | INFO     | update_server=False
[2025-07-28 09:25:12] 2025-07-28 00:24:42,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 09:25:12] 2025-07-28 00:24:42,250 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 09:25:12] 2025-07-28 00:24:42,336 | INFO     | all payload control threads have been joined
[2025-07-28 09:25:12] 2025-07-28 00:24:42,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 09:25:12] 2025-07-28 00:24:42,599 | INFO     | aborting loop
[2025-07-28 09:25:12] 2025-07-28 00:24:42,743 | INFO     | all job control threads have been joined
[2025-07-28 09:25:12] 2025-07-28 00:24:42,901 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 09:25:12] 2025-07-28 00:24:43,255 | INFO     | [job] queue monitor thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:43,256 | INFO     | [job] retrieve thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:43,317 | INFO     | all data control threads have been joined
[2025-07-28 09:25:12] 2025-07-28 00:24:43,341 | INFO     | [payload] control thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:43,436 | INFO     | [payload] validate_post thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:43,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:43,604 | INFO     | [job] job monitor thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:43,749 | INFO     | [job] control thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:44,000 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:44,160 | INFO     | [data] copytool_in thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:44,239 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:44,322 | INFO     | [data] control thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:44,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 09:25:12] 2025-07-28 00:24:44,469 | INFO     | [payload] failed_post thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:44,512 | INFO     | [job] validate thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:44,587 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:44,907 | INFO     | [data] copytool_out thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:48,429 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 09:25:12] 2025-07-28 00:24:49,118 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140009117779776)>', '<ExcThread(monitor, started 140008333760256)>']
[2025-07-28 09:25:12] 2025-07-28 00:24:54,135 | INFO     | all workflow threads have been joined
[2025-07-28 09:25:12] 2025-07-28 00:24:54,135 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 09:25:12] 2025-07-28 00:24:54,136 | INFO     | traces error code: 0
[2025-07-28 09:25:12] 2025-07-28 00:24:54,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 09:25:12] 2025-07-28 00:25:12,064 | INFO     | PID=2064284 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 09:25:12] 2025-07-28 00:25:12,064 | INFO     | .. there are 2 such processes running
[2025-07-28 09:25:12] 2025-07-28 00:25:12,065 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 09:25:12] 2025-07-28 00:25:12,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 09:25:12] 2025-07-28 00:25:12,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 09:25:12] 2025-07-28 00:25:12,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 09:25:12] 2025-07-28 00:25:12,065 | INFO     | [monitor] control thread has ended
[2025-07-28 09:25:12] 2025-07-28 00:25:12,097 [wrapper] ==== pilot stdout END ====
[2025-07-28 09:25:12] 2025-07-28 00:25:12,097 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 09:25:12] 2025-07-28 00:25:12,098 [wrapper] pilotpid: 2064284
[2025-07-28 09:25:12] 2025-07-28 00:25:12,099 [wrapper] Pilot exit status: 0
[2025-07-28 09:25:12] 2025-07-28 00:25:12,101 [wrapper] pandaids: 6747413224
[2025-07-28 09:25:12] 2025-07-28 00:25:12,108 [wrapper] cleanup supervisor_pilot 2110006 2064285
[2025-07-28 09:25:12] 2025-07-28 00:25:12,109 [wrapper] Test setup, not cleaning
[2025-07-28 09:25:12] 2025-07-28 00:25:12,109 [wrapper] apfmon messages muted
[2025-07-28 09:25:12] 2025-07-28 00:25:12,110 [wrapper] ==== wrapper stdout END ====
[2025-07-28 09:25:12] 2025-07-28 00:25:12,111 [wrapper] ==== wrapper stderr END ====
[2025-07-28 09:25:12]  *** Error codes and diagnostics ***
[2025-07-28 09:25:12]     "exeErrorCode": 0,
[2025-07-28 09:25:12]     "exeErrorDiag": "",
[2025-07-28 09:25:12]     "pilotErrorCode": 0,
[2025-07-28 09:25:12]     "pilotErrorDiag": "",
[2025-07-28 09:25:12]  *** Listing of results directory ***
[2025-07-28 09:25:12] total 354736
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc    530466 Jul 27 23:11 pilot3.tar.gz
[2025-07-28 09:25:12] -rwx------. 1 boinc boinc     36292 Jul 27 23:23 runpilot2-wrapper.sh
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc      5112 Jul 27 23:23 queuedata.json
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc       100 Jul 28 07:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 09:25:12] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 07:56 run_atlas
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc       105 Jul 28 07:56 job.xml
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc      9508 Jul 28 07:56 init_data.xml
[2025-07-28 09:25:12] -rw-r--r--. 2 boinc boinc 146506891 Jul 28 07:56 EVNT.45743347._002780.pool.root.1
[2025-07-28 09:25:12] -rw-r--r--. 2 boinc boinc     15095 Jul 28 07:56 start_atlas.sh
[2025-07-28 09:25:12] drwxrwx--x. 2 boinc boinc        68 Jul 28 07:56 shared
[2025-07-28 09:25:12] -rw-r--r--. 2 boinc boinc    542890 Jul 28 07:56 input.tar.gz
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc         0 Jul 28 07:56 boinc_lockfile
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc      2562 Jul 28 07:56 pandaJob.out
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc    980109 Jul 28 07:56 agis_schedconf.cvmfs.json
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc   1593052 Jul 28 07:56 agis_ddmendpoints.agis.ALL.json
[2025-07-28 09:25:12] drwx------. 4 boinc boinc      4096 Jul 28 07:56 pilot3
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc 211292788 Jul 28 09:24 HITS.45743349._049998.pool.root.1
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc      1016 Jul 28 09:24 memory_monitor_summary.json
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc       529 Jul 28 09:24 boinc_task_state.xml
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc    268329 Jul 28 09:24 log.45743349._049998.job.log.tgz.1
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc      7760 Jul 28 09:24 heartbeat.json
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc        27 Jul 28 09:24 wrapper_checkpoint.txt
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc      8192 Jul 28 09:24 boinc_mmap_file
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc       822 Jul 28 09:25 pilotlog.txt
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc        95 Jul 28 09:25 pilot_heartbeat.json
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc    521901 Jul 28 09:25 log.45743349._049998.job.log.1
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc       357 Jul 28 09:25 output.list
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc       620 Jul 28 09:25 runtime_log
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc    808960 Jul 28 09:25 result.tar.gz
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc      8618 Jul 28 09:25 runtime_log.err
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc       642 Jul 28 09:25 rJvMDmoSH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1XVLDmv5CSUn.diag
[2025-07-28 09:25:12] -rw-r--r--. 1 boinc boinc     21284 Jul 28 09:25 stderr.txt
[2025-07-28 09:25:12] HITS file was successfully produced:
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc 211292788 Jul 28 09:24 shared/HITS.pool.root.1
[2025-07-28 09:25:12]  *** Contents of shared directory: ***
[2025-07-28 09:25:12] total 350760
[2025-07-28 09:25:12] -rw-r--r--. 2 boinc boinc 146506891 Jul 28 07:56 ATLAS.root_0
[2025-07-28 09:25:12] -rw-r--r--. 2 boinc boinc     15095 Jul 28 07:56 start_atlas.sh
[2025-07-28 09:25:12] -rw-r--r--. 2 boinc boinc    542890 Jul 28 07:56 input.tar.gz
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc 211292788 Jul 28 09:24 HITS.pool.root.1
[2025-07-28 09:25:12] -rw-------. 1 boinc boinc    808960 Jul 28 09:25 result.tar.gz
09:25:13 (2060558): run_atlas exited; CPU time 26947.882495
09:25:13 (2060558): called boinc_finish(0)

</stderr_txt>
]]>

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