Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:29:58 (1339102): wrapper (7.7.26015): starting
15:29:58 (1339102): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:29:58] Arguments: --nthreads 8
[2025-07-27 15:29:58] Threads: 8
[2025-07-27 15:29:58] Checking for CVMFS
[2025-07-27 15:29:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:29:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:29:59] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:29:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:29:59] 2.13.1.0 704839 14544 154308 148822 3 196 32319917 40960001 10408 16776704 0 42994104 99.889 17310027 42287 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 15:29:59] CVMFS is ok
[2025-07-27 15:29:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:29:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:29:59] Further information can be found at the LHC@home message board.
[2025-07-27 15:29:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:29:59] Checking for apptainer binary...
[2025-07-27 15:29:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:29:59] Running /usr/bin/apptainer --version
[2025-07-27 15:29:59] apptainer version 1.4.1-1.el9
[2025-07-27 15:29:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:29:59] c-212-4.aglt2.org
[2025-07-27 15:29:59] apptainer works
[2025-07-27 15:29:59] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:29:59] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:29:59] Starting ATLAS job with PandaID=6747351714
[2025-07-27 15:29:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:44:19]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:44:19]  protocol_id=None
[2025-07-27 16:44:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 16:44:19]  replicas=None
[2025-07-27 16:44:19]  scope=mc23_13p6TeV
[2025-07-27 16:44:19]  status=None
[2025-07-27 16:44:19]  status_code=0
[2025-07-27 16:44:19]  storage_token=
[2025-07-27 16:44:19]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6747351714/log.45743349._046833.job.log.tgz.1
[2025-07-27 16:44:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/51/2b/log.45743349._046833.job.log.tgz.1
[2025-07-27 16:44:19]  workdir=None
[2025-07-27 16:44:19] ]
[2025-07-27 16:44:19] 2025-07-27 20:43:39,277 | INFO     | transferring file log.45743349._046833.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6747351714/log.45743349._046833.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 16:44:19] 2025-07-27 20:43:39,277 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6747351714/log.45743349._046833.job.log.tgz.1 /tmp/boinchome/slots/5/log.45743349._046833.job
[2025-07-27 16:44:19] 2025-07-27 20:43:39,304 | INFO     | adding to output.list: log.45743349._046833.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/51/2b/log.45743349._046833.job.log.tg
[2025-07-27 16:44:19] 2025-07-27 20:43:39,305 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:44:19] 2025-07-27 20:43:39,305 | INFO     | summary of transferred files:
[2025-07-27 16:44:19] 2025-07-27 20:43:39,305 | INFO     |  -- lfn=log.45743349._046833.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:44:19] 2025-07-27 20:43:39,305 | INFO     | stage-out finished correctly
[2025-07-27 16:44:19] 2025-07-27 20:43:39,977 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:44:19] 2025-07-27 20:43:42,567 | INFO     | job 6747351714 has state=finished
[2025-07-27 16:44:19] 2025-07-27 20:43:42,568 | INFO     | preparing for final server update for job 6747351714 in state='finished'
[2025-07-27 16:44:19] 2025-07-27 20:43:42,569 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:44:19] 2025-07-27 20:43:42,569 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:44:19] 2025-07-27 20:43:42,569 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:44:19] 2025-07-27 20:43:42,569 | INFO     | job 6747351714 has finished - writing final server update
[2025-07-27 16:44:19] 2025-07-27 20:43:42,571 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:44:19] 2025-07-27 20:43:42,572 | INFO     | executing command: lscpu
[2025-07-27 16:44:19] 2025-07-27 20:43:42,636 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:44:19] 2025-07-27 20:43:42,748 | WARNING  | process 1349413 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 16:44:19] 2025-07-27 20:43:42,749 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6747351714/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:44:19] 2025-07-27 20:43:43,091 | INFO     | number of running child processes to parent process 1349413: 1
[2025-07-27 16:44:19] 2025-07-27 20:43:43,091 | INFO     | maximum number of monitored processes: 6
[2025-07-27 16:44:19] 2025-07-27 20:43:45,596 | INFO     | monitor loop #325: job 0:6747351714 is in state 'finished'
[2025-07-27 16:44:19] 2025-07-27 20:43:45,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:44:19] 2025-07-27 20:43:46,508 | INFO     | PID=1342952 has CPU usage=12.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 16:44:19] 2025-07-27 20:43:46,508 | INFO     | .. there are 14 such processes running
[2025-07-27 16:44:19] 2025-07-27 20:43:46,777 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 16:44:19] 2025-07-27 20:43:46,781 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3256.8275729166653
[2025-07-27 16:44:19] 2025-07-27 20:43:46,790 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6747351714/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:44:19] 2025-07-27 20:43:46,791 | INFO     | extracted standard info from prmon json
[2025-07-27 16:44:19] 2025-07-27 20:43:46,791 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:44:19] 2025-07-27 20:43:46,791 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:44:19] 2025-07-27 20:43:46,791 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:44:19] 2025-07-27 20:43:46,791 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:44:19] 2025-07-27 20:43:46,793 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:44:19] 2025-07-27 20:43:46,793 | INFO     | sum of square deviations: 85136480.0
[2025-07-27 16:44:19] 2025-07-27 20:43:46,793 | INFO     | sum of deviations: -2393986968.0000005
[2025-07-27 16:44:19] 2025-07-27 20:43:46,793 | INFO     | mean x: 1753646902.0
[2025-07-27 16:44:19] 2025-07-27 20:43:46,793 | INFO     | mean y: 2560314.369230769
[2025-07-27 16:44:19] 2025-07-27 20:43:46,799 | INFO     | -- intersect: 49314063795.15179
[2025-07-27 16:44:19] 2025-07-27 20:43:46,799 | INFO     | intersect: 49314063795.15179
[2025-07-27 16:44:19] 2025-07-27 20:43:46,799 | INFO     | chi2: 0.0031175836960344646
[2025-07-27 16:44:19] 2025-07-27 20:43:46,799 | INFO     | -- intersect: 49314063795.15179
[2025-07-27 16:44:19] 2025-07-27 20:43:46,799 | INFO     | current memory leak: -28.12 B/s (using 65 data points, chi2=0.00)
[2025-07-27 16:44:19] 2025-07-27 20:43:46,799 | INFO     | could have reported an average CPU frequency of 3278 MHz (6 samples)
[2025-07-27 16:44:19] 2025-07-27 20:43:46,799 | INFO     | ..............................
[2025-07-27 16:44:19] 2025-07-27 20:43:46,800 | INFO     | . Timing measurements:
[2025-07-27 16:44:19] 2025-07-27 20:43:46,800 | INFO     | . get job = 0 s
[2025-07-27 16:44:19] 2025-07-27 20:43:46,800 | INFO     | . initial setup = 2 s
[2025-07-27 16:44:19] 2025-07-27 20:43:46,800 | INFO     | . payload setup = 9 s
[2025-07-27 16:44:19] 2025-07-27 20:43:46,800 | INFO     | . stage-in = 0 s
[2025-07-27 16:44:19] 2025-07-27 20:43:46,800 | INFO     | . payload execution = 4375 s
[2025-07-27 16:44:19] 2025-07-27 20:43:46,800 | INFO     | . stage-out = 0 s
[2025-07-27 16:44:19] 2025-07-27 20:43:46,800 | INFO     | . log creation = 0 s
[2025-07-27 16:44:19] 2025-07-27 20:43:46,800 | INFO     | ..............................
[2025-07-27 16:44:19] 2025-07-27 20:43:47,340 | INFO     | 
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | job summary report
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | --------------------------------------------------
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | PanDA job id: 6747351714
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | task id: 45743349
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | errors: (none)
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | pilot state: finished 
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | transexitcode: 0
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | exeerrorcode: 0
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | exeerrordiag: 
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | exitcode: 0
[2025-07-27 16:44:19] 2025-07-27 20:43:47,341 | INFO     | exitmsg: OK
[2025-07-27 16:44:19] 2025-07-27 20:43:47,342 | INFO     | cpuconsumptiontime: 32245 s
[2025-07-27 16:44:19] 2025-07-27 20:43:47,342 | INFO     | nevents: 400
[2025-07-27 16:44:19] 2025-07-27 20:43:47,342 | INFO     | neventsw: 0
[2025-07-27 16:44:19] 2025-07-27 20:43:47,342 | INFO     | pid: 1349413
[2025-07-27 16:44:19] 2025-07-27 20:43:47,342 | INFO     | pgrp: 1349413
[2025-07-27 16:44:19] 2025-07-27 20:43:47,342 | INFO     | corecount: 8
[2025-07-27 16:44:19] 2025-07-27 20:43:47,342 | INFO     | event service: False
[2025-07-27 16:44:19] 2025-07-27 20:43:47,342 | INFO     | sizes: {0: 2397198, 1: 2397453, 7: 2397715, 12: 2397743, 4388: 2423762, 4389: 2432943, 4390: 2432943, 4397: 2433137}
[2025-07-27 16:44:19] 2025-07-27 20:43:47,342 | INFO     | --------------------------------------------------
[2025-07-27 16:44:19] 2025-07-27 20:43:47,342 | INFO     | 
[2025-07-27 16:44:19] 2025-07-27 20:43:47,342 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-27 16:44:19] 2025-07-27 20:43:47,371 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,371 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,371 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,371 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,371 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,371 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,371 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,371 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,372 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,372 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,372 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,372 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,372 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,373 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,373 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,373 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,373 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,373 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:44:19] 2025-07-27 20:43:47,373 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,373 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:44:19] 2025-07-27 20:43:47,373 | INFO     | job 6747351714 has completed (purged errors)
[2025-07-27 16:44:19] 2025-07-27 20:43:47,373 | INFO     | overall cleanup function is called
[2025-07-27 16:44:19] 2025-07-27 20:43:48,381 | INFO     | --- collectZombieJob: --- 10, [1349413]
[2025-07-27 16:44:19] 2025-07-27 20:43:48,382 | INFO     | zombie collector waiting for pid 1349413
[2025-07-27 16:44:19] 2025-07-27 20:43:48,382 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:44:19] 2025-07-27 20:43:48,382 | INFO     | collected zombie processes
[2025-07-27 16:44:19] 2025-07-27 20:43:48,382 | INFO     | will attempt to kill all subprocesses of pid=1349413
[2025-07-27 16:44:19] 2025-07-27 20:43:48,731 | INFO     | process IDs to be killed: [1349413] (in reverse order)
[2025-07-27 16:44:19] 2025-07-27 20:43:48,842 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:44:19] 2025-07-27 20:43:48,842 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:44:19] 2025-07-27 20:43:48,853 | INFO     | did not find any defunct processes belonging to 1349413
[2025-07-27 16:44:19] 2025-07-27 20:43:48,863 | INFO     | did not find any defunct processes belonging to 1349413
[2025-07-27 16:44:19] 2025-07-27 20:43:48,863 | INFO     | ready for new job
[2025-07-27 16:44:19] 2025-07-27 20:43:48,863 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:44:19] 2025-07-27 20:43:48,864 | INFO     | ***************************************
[2025-07-27 16:44:19] 2025-07-27 20:43:48,864 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:44:19] 2025-07-27 20:43:48,864 | INFO     | ***************************************
[2025-07-27 16:44:19] 2025-07-27 20:43:48,864 | INFO     | 
[2025-07-27 16:44:19] 2025-07-27 20:43:48,868 | INFO     | architecture information:
[2025-07-27 16:44:19] 2025-07-27 20:43:48,868 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:44:19] 2025-07-27 20:43:48,883 | INFO     | cat /etc/os-release:
[2025-07-27 16:44:19] NAME="CentOS Linux"
[2025-07-27 16:44:19] VERSION="7 (Core)"
[2025-07-27 16:44:19] ID="centos"
[2025-07-27 16:44:19] ID_LIKE="rhel fedora"
[2025-07-27 16:44:19] VERSION_ID="7"
[2025-07-27 16:44:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:44:19] ANSI_COLOR="0;31"
[2025-07-27 16:44:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:44:19] HOME_URL="https://www.centos.org/"
[2025-07-27 16:44:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:44:19] 
[2025-07-27 16:44:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:44:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:44:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:44:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:44:19] 
[2025-07-27 16:44:19] 2025-07-27 20:43:48,883 | INFO     | ***************************************
[2025-07-27 16:44:19] 2025-07-27 20:43:49,386 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-27 16:44:19] 2025-07-27 20:43:49,400 | INFO     | sufficient remaining disk space (124280373248 B)
[2025-07-27 16:44:19] 2025-07-27 20:43:49,401 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:44:19] 2025-07-27 20:43:49,401 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:44:19] 2025-07-27 20:43:49,401 | INFO     | update_server=False
[2025-07-27 16:44:19] 2025-07-27 20:43:49,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:44:19] 2025-07-27 20:43:49,401 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:44:19] 2025-07-27 20:43:49,402 | INFO     | aborting loop
[2025-07-27 16:44:19] 2025-07-27 20:43:49,422 | INFO     | all payload control threads have been joined
[2025-07-27 16:44:19] 2025-07-27 20:43:49,794 | INFO     | all job control threads have been joined
[2025-07-27 16:44:19] 2025-07-27 20:43:49,905 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:44:19] 2025-07-27 20:43:49,936 | INFO     | all data control threads have been joined
[2025-07-27 16:44:19] 2025-07-27 20:43:50,406 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:50,406 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:50,427 | INFO     | [payload] control thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:50,553 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:44:19] 2025-07-27 20:43:50,800 | INFO     | [job] control thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:50,800 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:50,941 | INFO     | [data] control thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:51,381 | INFO     | [job] validate thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:51,381 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:51,394 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:51,561 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:51,564 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:51,582 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:51,897 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:44:19] 2025-07-27 20:43:51,911 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:52,902 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:54,559 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:43:59,495 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:44:19] 2025-07-27 20:44:00,502 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:44:19] 2025-07-27 20:44:01,237 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862664927040)>', '<ExcThread(monitor, started 139862036436736)>']
[2025-07-27 16:44:19] 2025-07-27 20:44:06,241 | INFO     | all workflow threads have been joined
[2025-07-27 16:44:19] 2025-07-27 20:44:06,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:44:19] 2025-07-27 20:44:06,241 | INFO     | traces error code: 0
[2025-07-27 16:44:19] 2025-07-27 20:44:06,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:44:19] 2025-07-27 20:44:19,024 | INFO     | PID=1342952 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 16:44:19] 2025-07-27 20:44:19,025 | INFO     | .. there are 14 such processes running
[2025-07-27 16:44:19] 2025-07-27 20:44:19,025 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:44:19] 2025-07-27 20:44:19,026 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:44:19] 2025-07-27 20:44:19,026 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:44:19] 2025-07-27 20:44:19,026 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:44:19] 2025-07-27 20:44:19,026 | INFO     | [monitor] control thread has ended
[2025-07-27 16:44:19] 2025-07-27 20:44:19,119 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:44:19] 2025-07-27 20:44:19,122 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:44:19] 2025-07-27 20:44:19,125 [wrapper] pilotpid: 1342952
[2025-07-27 16:44:19] 2025-07-27 20:44:19,127 [wrapper] Pilot exit status: 0
[2025-07-27 16:44:19] 2025-07-27 20:44:19,138 [wrapper] pandaids: 6747351714
[2025-07-27 16:44:19] 2025-07-27 20:44:19,224 [wrapper] cleanup supervisor_pilot 1582929 1342953
[2025-07-27 16:44:19] 2025-07-27 20:44:19,227 [wrapper] Test setup, not cleaning
[2025-07-27 16:44:19] 2025-07-27 20:44:19,231 [wrapper] apfmon messages muted
[2025-07-27 16:44:19] 2025-07-27 20:44:19,235 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:44:19] 2025-07-27 20:44:19,239 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:44:19]  *** Error codes and diagnostics ***
[2025-07-27 16:44:19]     "exeErrorCode": 0,
[2025-07-27 16:44:19]     "exeErrorDiag": "",
[2025-07-27 16:44:19]     "pilotErrorCode": 0,
[2025-07-27 16:44:19]     "pilotErrorDiag": "",
[2025-07-27 16:44:19]  *** Listing of results directory ***
[2025-07-27 16:44:19] total 348376
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 06:10 pilot3.tar.gz
[2025-07-27 16:44:19] -rwx------. 1 boincer umatlas     36292 Jul 27 06:25 runpilot2-wrapper.sh
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 06:25 queuedata.json
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:44:19] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:29 run_atlas
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:29 job.xml
[2025-07-27 16:44:19] -rw-r--r--. 2 boincer umatlas 145034145 Jul 27 15:29 EVNT.45743347._001580.pool.root.1
[2025-07-27 16:44:19] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:29 start_atlas.sh
[2025-07-27 16:44:19] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:29 shared
[2025-07-27 16:44:19] -rw-r--r--. 2 boincer umatlas    542906 Jul 27 15:29 input.tar.gz
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:29 boinc_lockfile
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 15:29 pandaJob.out
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas    980125 Jul 27 15:30 agis_schedconf.cvmfs.json
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:30 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:44:19] drwx------. 4 boincer umatlas      4096 Jul 27 15:30 pilot3
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas      6945 Jul 27 16:38 init_data.xml
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas 206366004 Jul 27 16:43 HITS.45743349._046833.pool.root.1
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas       529 Jul 27 16:43 boinc_task_state.xml
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas      1038 Jul 27 16:43 memory_monitor_summary.json
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas    293702 Jul 27 16:43 log.45743349._046833.job.log.tgz.1
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas      7764 Jul 27 16:43 heartbeat.json
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas        95 Jul 27 16:44 pilot_heartbeat.json
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas       823 Jul 27 16:44 pilotlog.txt
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 16:44 boinc_mmap_file
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas        27 Jul 27 16:44 wrapper_checkpoint.txt
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas    437712 Jul 27 16:44 log.45743349._046833.job.log.1
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas       357 Jul 27 16:44 output.list
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas       620 Jul 27 16:44 runtime_log
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas    747520 Jul 27 16:44 result.tar.gz
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 16:44 runtime_log.err
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas       650 Jul 27 16:44 ogUMDmHkD07n9Rq4apOajLDm4fhM0noT9bVof3QYDmYO2KDmkblcSo.diag
[2025-07-27 16:44:19] -rw-r--r--. 1 boincer umatlas     21906 Jul 27 16:44 stderr.txt
[2025-07-27 16:44:19] HITS file was successfully produced:
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas 206366004 Jul 27 16:43 shared/HITS.pool.root.1
[2025-07-27 16:44:19]  *** Contents of shared directory: ***
[2025-07-27 16:44:19] total 344456
[2025-07-27 16:44:19] -rw-r--r--. 2 boincer umatlas 145034145 Jul 27 15:29 ATLAS.root_0
[2025-07-27 16:44:19] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:29 start_atlas.sh
[2025-07-27 16:44:19] -rw-r--r--. 2 boincer umatlas    542906 Jul 27 15:29 input.tar.gz
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas 206366004 Jul 27 16:43 HITS.pool.root.1
[2025-07-27 16:44:19] -rw-------. 1 boincer umatlas    747520 Jul 27 16:44 result.tar.gz
16:44:21 (1339102): run_atlas exited; CPU time 32360.997723
16:44:21 (1339102): called boinc_finish(0)

</stderr_txt>
]]>

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