Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-27 16:09:42 (32740): Detected: vboxwrapper 26206
2025-07-27 16:09:42 (32740): Detected: BOINC client v7.20.2
2025-07-27 16:09:43 (32740): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-07-27 16:09:43 (32740): Successfully copied 'init_data.xml' to the shared directory.
2025-07-27 16:09:43 (32740): Create VM. (boinc_13cdd83828d9bc58, slot#0)
2025-07-27 16:09:44 (32740): Setting Memory Size for VM. (4600MB)
2025-07-27 16:09:44 (32740): Setting CPU Count for VM. (6)
2025-07-27 16:09:44 (32740): Setting Chipset Options for VM.
2025-07-27 16:09:45 (32740): Setting Graphics Controller Options for VM.
2025-07-27 16:09:45 (32740): Setting Boot Options for VM.
2025-07-27 16:09:45 (32740): Setting Network Configuration for NAT.
2025-07-27 16:09:46 (32740): Enabling VM Network Access.
2025-07-27 16:09:46 (32740): Disabling USB Support for VM.
2025-07-27 16:09:46 (32740): Disabling COM Port Support for VM.
2025-07-27 16:09:46 (32740): Disabling LPT Port Support for VM.
2025-07-27 16:09:47 (32740): Disabling Audio Support for VM.
2025-07-27 16:09:47 (32740): Disabling Clipboard Support for VM.
2025-07-27 16:09:47 (32740): Disabling Drag and Drop Support for VM.
2025-07-27 16:09:47 (32740): Adding storage controller(s) to VM.
2025-07-27 16:09:48 (32740): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-27 16:09:49 (32740): Adding VirtualBox Guest Additions to VM.
2025-07-27 16:09:49 (32740): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-27 16:09:49 (32740): forwarding host port 50228 to guest port 80
2025-07-27 16:09:50 (32740): Enabling remote desktop for VM.
2025-07-27 16:09:50 (32740): Required extension pack not installed, remote desktop not enabled.
2025-07-27 16:09:50 (32740): Enabling shared directory for VM.
2025-07-27 16:09:50 (32740): Starting VM using VBoxManage interface. (boinc_13cdd83828d9bc58, slot#0)
2025-07-27 16:09:57 (32740): Successfully started VM. (PID = '29488')
2025-07-27 16:09:57 (32740): Reporting VM Process ID to BOINC.
2025-07-27 16:09:57 (32740): Guest Log: BIOS: VirtualBox 6.1.34
2025-07-27 16:09:57 (32740): Guest Log: CPUID EDX: 0x178bfbff
2025-07-27 16:09:57 (32740): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-27 16:09:57 (32740): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-27 16:09:57 (32740): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-27 16:09:57 (32740): Detected: Web Application Enabled (http://localhost:50228)
2025-07-27 16:09:57 (32740): Preference change detected
2025-07-27 16:09:57 (32740): Setting CPU throttle for VM. (50%)
2025-07-27 16:09:57 (32740): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-27 16:09:59 (32740): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-27 16:09:59 (32740): Guest Log: BIOS: Booting from Hard Disk...
2025-07-27 16:10:03 (32740): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-27 16:10:03 (32740): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-27 16:10:03 (32740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-27 16:10:13 (32740): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-27 16:10:13 (32740): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-27 16:10:22 (32740): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-27 16:10:22 (32740): Guest Log: 00:00:00.000138 main     Log opened 2025-07-27T16:10:20.350112000Z
2025-07-27 16:10:22 (32740): Guest Log: 00:00:00.000277 main     OS Product: Linux
2025-07-27 16:10:22 (32740): Guest Log: 00:00:00.000314 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-27 16:10:22 (32740): Guest Log: 00:00:00.000333 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-27 16:10:22 (32740): Guest Log: 00:00:00.000353 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-27 16:10:22 (32740): Guest Log: 00:00:00.000354 main     Process ID: 1311
2025-07-27 16:10:22 (32740): Guest Log: 00:00:00.000354 main     Package type: LINUX_64BITS_GENERIC
2025-07-27 16:10:22 (32740): Guest Log: 00:00:00.003285 main     5.2.32 r132073 started. Verbose level = 0
2025-07-27 16:10:22 (32740): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-27 16:10:22 (32740): Guest Log: [INFO] Mounting shared directory
2025-07-27 16:10:22 (32740): Guest Log: [INFO] Checking for init_data.xml
2025-07-27 16:10:30 (32740): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-27 16:10:30 (32740): Guest Log: [INFO] Detected branch: prod
2025-07-27 16:10:30 (32740): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-27 16:10:30 (32740): Guest Log: Copying input files
2025-07-27 16:10:32 (32740): Guest Log: Copied input files into RunAtlas.
2025-07-27 16:10:32 (32740): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-27 16:10:32 (32740): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-27 16:10:32 (32740): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-27 16:10:32 (32740): Guest Log: Further information can be found at the LHC@home message board.
2025-07-27 16:10:32 (32740): Guest Log: 00:00:10.008053 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 399 016 000ns (GuestNow=1 753 647 031 756 496 000 ns GuestLast=1 753 632 620 357 480 000 ns fSetTimeLastLoop=true )
2025-07-27 16:10:41 (32740): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-27 16:10:41 (32740): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-27 16:10:41 (32740): Guest Log: 2.6.3.0 1591 0 32196 148822 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-27 16:10:42 (32740): Guest Log: copied the webapp to /var/www
2025-07-27 16:10:42 (32740): Guest Log: ATHENA_PROC_NUMBER=6
2025-07-27 16:10:42 (32740): Guest Log: ATHENA_CORE_NUMBER=6
2025-07-27 16:10:42 (32740): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-27 16:10:42 (32740): Guest Log:  *** Starting ATLAS job. (PandaID=6747412861 taskID=45743349) ***
2025-07-27 16:15:13 (32740): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 16:15:22 (32740): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 16:16:02 (32740): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 16:16:13 (32740): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 16:16:33 (32740): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 16:16:42 (32740): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 16:16:53 (32740): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 16:17:03 (32740): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 17:16:57 (32740): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 17:17:07 (32740): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 17:50:57 (32740): Status Report: Elapsed Time: '6000.000000'
2025-07-27 17:50:57 (32740): Status Report: CPU Time: '19456.890625'
2025-07-27 18:17:12 (32740): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 18:17:22 (32740): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 19:17:26 (32740): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 19:17:36 (32740): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 19:31:25 (32740): Status Report: Elapsed Time: '12000.000000'
2025-07-27 19:31:25 (32740): Status Report: CPU Time: '41148.343750'
2025-07-27 19:40:41 (32740): Guest Log:  *** Job finished ***
2025-07-27 19:40:41 (32740): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-27 19:40:41 (32740): Guest Log: 2025-07-27 23:39:24,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-07-27 19:40:41 (32740): Guest Log: 2025-07-27 23:39:25,414 | INFO     | [job] queue monitor thread has finished
2025-07-27 19:40:41 (32740): Guest Log: 2025-07-27 23:39:27,496 | INFO     | [data] queue_monitor thread has finished
2025-07-27 19:40:41 (32740): Guest Log: 2025-07-27 23:39:29,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180048705344)>', '<ExcThread(monitor, started 140179469756160)>']
2025-07-27 19:40:41 (32740): Guest Log: 2025-07-27 23:39:29,575 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-27 19:40:41 (32740): Guest Log: 2025-07-27 23:39:29,575 | INFO     | [monitor] control thread has ended
2025-07-27 19:40:41 (32740): Guest Log: 2025-07-27 23:39:34,106 | INFO     | all workflow threads have been joined
2025-07-27 19:40:41 (32740): Guest Log: 2025-07-27 23:39:34,106 | INFO     | end of generic workflow (traces error code: 0)
2025-07-27 19:40:41 (32740): Guest Log: 2025-07-27 23:39:34,107 | INFO     | traces error code: 0
2025-07-27 19:40:41 (32740): Guest Log: 2025-07-27 23:39:34,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-27 19:40:41 (32740): Guest Log: 2025-07-27 23:39:34,259 [wrapper] ==== pilot stdout END ====
2025-07-27 19:40:42 (32740): Guest Log: 2025-07-27 23:39:34,267 [wrapper] ==== wrapper stdout RESUME ====
2025-07-27 19:40:42 (32740): Guest Log: 2025-07-27 23:39:34,275 [wrapper] pilotpid: 5929
2025-07-27 19:40:42 (32740): Guest Log: 2025-07-27 23:39:34,282 [wrapper] Pilot exit status: 0
2025-07-27 19:40:42 (32740): Guest Log: 2025-07-27 23:39:34,402 [wrapper] pandaids: 6747412861
2025-07-27 19:40:42 (32740): Guest Log: 2025-07-27 23:39:34,447 [wrapper] cleanup supervisor_pilot  8807 5930
2025-07-27 19:40:42 (32740): Guest Log: 2025-07-27 23:39:34,455 [wrapper] Test setup, not cleaning
2025-07-27 19:40:42 (32740): Guest Log: 2025-07-27 23:39:34,461 [wrapper] apfmon messages muted
2025-07-27 19:40:42 (32740): Guest Log: 2025-07-27 23:39:34,467 [wrapper] ==== wrapper stdout END ====
2025-07-27 19:40:42 (32740): Guest Log: 2025-07-27 23:39:34,473 [wrapper] ==== wrapper stderr END ====
2025-07-27 19:40:42 (32740): Guest Log:  *** Error codes and diagnostics ***
2025-07-27 19:40:42 (32740): Guest Log:     "exeErrorCode": 0,
2025-07-27 19:40:42 (32740): Guest Log:     "exeErrorDiag": "",
2025-07-27 19:40:42 (32740): Guest Log:     "pilotErrorCode": 0,
2025-07-27 19:40:42 (32740): Guest Log:     "pilotErrorDiag": "",
2025-07-27 19:40:42 (32740): Guest Log:  *** Listing of results directory ***
2025-07-27 19:40:42 (32740): Guest Log: total 217300
2025-07-27 19:40:42 (32740): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 27 14:11 pilot3.tar.gz
2025-07-27 19:40:42 (32740): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 27 14:16 queuedata.json
2025-07-27 19:40:42 (32740): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 27 14:16 runpilot2-wrapper.sh
2025-07-27 19:40:42 (32740): Guest Log: -rwxr-xr-x. 1 atlas atlas      8866 Jul 27 20:10 init_data.xml
2025-07-27 19:40:42 (32740): Guest Log: -rwxr-xr-x. 1 atlas atlas    542899 Jul 27 20:10 input.tar.gz
2025-07-27 19:40:42 (32740): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 27 20:10 start_atlas.sh
2025-07-27 19:40:42 (32740): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 27 20:10 EVNT.45743347._002740.pool.root.1 -> /data/./ATLAS.root_0
2025-07-27 19:40:42 (32740): Guest Log: -rw-r--r--. 1 atlas atlas      2563 Jul 27 20:10 pandaJob.out
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas    980125 Jul 27 20:11 agis_schedconf.cvmfs.json
2025-07-27 19:40:42 (32740): Guest Log: drwx------. 4 atlas atlas      4096 Jul 27 20:11 pilot3
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas 216280612 Jul 27 23:38 HITS.45743349._049744.pool.root.1
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas        95 Jul 27 23:38 pilot_heartbeat.json
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas      1037 Jul 27 23:39 memory_monitor_summary.json
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 27 23:39 agis_ddmendpoints.agis.ALL.json
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas    337722 Jul 27 23:39 log.45743349._049744.job.log.tgz.1
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas      7847 Jul 27 23:39 heartbeat.json
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas      4540 Jul 27 23:39 pilotlog.txt
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas    877052 Jul 27 23:39 log.45743349._049744.job.log.1
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas       357 Jul 27 23:39 output.list
2025-07-27 19:40:42 (32740): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 27 23:39 runtime_log
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas   1228800 Jul 27 23:39 result.tar.gz
2025-07-27 19:40:42 (32740): Guest Log: -rw-r--r--. 1 atlas atlas      8633 Jul 27 23:39 runtime_log.err
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas       670 Jul 27 23:39 KdVLDm9LH07n9Rq4apOajLDm4fhM0noT9bVof3QYDmLf2KDm1YYUym.diag
2025-07-27 19:40:42 (32740): Guest Log: Looking for outputfile HITS.45743349._049744.pool.root.1
2025-07-27 19:40:42 (32740): Guest Log: HITS file was successfully produced
2025-07-27 19:40:42 (32740): Guest Log: -rw-------. 1 atlas atlas 216280612 Jul 27 23:38 /home/atlas/RunAtlas/HITS.45743349._049744.pool.root.1
2025-07-27 19:40:42 (32740): Guest Log: Successfully finished the ATLAS job!
2025-07-27 19:40:42 (32740): Guest Log: Copying the results back to the shared directory!
2025-07-27 19:40:43 (32740): Guest Log:  *** Contents of shared directory: ***
2025-07-27 19:40:43 (32740): Guest Log: total 440528
2025-07-27 19:40:43 (32740): Guest Log: -rwxrwxrwx. 1 root root 233017290 Jul 27 20:09 ATLAS.root_0
2025-07-27 19:40:43 (32740): Guest Log: -rwxrwxrwx. 1 root root 216280612 Jul 27  2025 HITS.pool.root.1
2025-07-27 19:40:43 (32740): Guest Log: -rwxrwxrwx. 1 root root      8866 Jul 27 20:09 init_data.xml
2025-07-27 19:40:43 (32740): Guest Log: -rwxrwxrwx. 1 root root    542899 Jul 27 19:47 input.tar.gz
2025-07-27 19:40:43 (32740): Guest Log: -rwxrwxrwx. 1 root root   1228800 Jul 27  2025 result.tar.gz
2025-07-27 19:40:43 (32740): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 27 19:47 start_atlas.sh
2025-07-27 19:40:43 (32740): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-27 19:40:44 (32740): VM Completion File Detected.
2025-07-27 19:40:44 (32740): Powering off VM.
2025-07-27 19:40:45 (32740): Successfully stopped VM.
2025-07-27 19:40:45 (32740): Deregistering VM. (boinc_13cdd83828d9bc58, slot#0)
2025-07-27 19:40:45 (32740): Removing network bandwidth throttle group from VM.
2025-07-27 19:40:45 (32740): Removing VM from VirtualBox.
19:40:50 (32740): called boinc_finish(0)

</stderr_txt>
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