Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:26:16 (1073286): wrapper (7.7.26015): starting
15:26:16 (1073286): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:26:16] Arguments: --nthreads 8
[2025-07-27 15:26:16] Threads: 8
[2025-07-27 15:26:16] Checking for CVMFS
[2025-07-27 15:26:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:26:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:26:16] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:26:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:26:17] 2.12.6.0 1643581 18798 323468 148822 0 344 31270242 40960000 13859 16776704 1 97621338 99.698 120388541 17851 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.230.184:3128 1
[2025-07-27 15:26:17] CVMFS is ok
[2025-07-27 15:26:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:26:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:26:17] Further information can be found at the LHC@home message board.
[2025-07-27 15:26:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:26:17] Checking for apptainer binary...
[2025-07-27 15:26:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:26:17] Running /usr/bin/apptainer --version
[2025-07-27 15:26:17] apptainer version 1.4.1-1.el9
[2025-07-27 15:26:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:26:17] c7-3-35.aglt2.org
[2025-07-27 15:26:17] apptainer works
[2025-07-27 15:26:17] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:26:17] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:26:17] Starting ATLAS job with PandaID=6747413269
[2025-07-27 15:26:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:40:13]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:40:13]  scope=mc23_13p6TeV
[2025-07-27 16:40:13]  status=None
[2025-07-27 16:40:13]  status_code=0
[2025-07-27 16:40:13]  storage_token=
[2025-07-27 16:40:13]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747413269/log.45743349._050043.job.log.tgz.1
[2025-07-27 16:40:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/a4/log.45743349._050043.job.log.tgz.1
[2025-07-27 16:40:13]  workdir=None
[2025-07-27 16:40:13] ]
[2025-07-27 16:40:13] 2025-07-27 20:39:33,231 | INFO     | transferring file log.45743349._050043.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747413269/log.45743349._050043.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 16:40:13] 2025-07-27 20:39:33,232 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747413269/log.45743349._050043.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._050043.job
[2025-07-27 16:40:13] 2025-07-27 20:39:33,253 | INFO     | adding to output.list: log.45743349._050043.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/a4/log.45743349._050043.job.log.tg
[2025-07-27 16:40:13] 2025-07-27 20:39:33,253 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:40:13] 2025-07-27 20:39:33,253 | INFO     | summary of transferred files:
[2025-07-27 16:40:13] 2025-07-27 20:39:33,254 | INFO     |  -- lfn=log.45743349._050043.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:40:13] 2025-07-27 20:39:33,254 | INFO     | stage-out finished correctly
[2025-07-27 16:40:13] 2025-07-27 20:39:33,818 | WARNING  | process 1084765 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 16:40:13] 2025-07-27 20:39:33,818 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747413269/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:40:13] 2025-07-27 20:39:34,167 | INFO     | number of running child processes to parent process 1084765: 1
[2025-07-27 16:40:13] 2025-07-27 20:39:34,168 | INFO     | maximum number of monitored processes: 6
[2025-07-27 16:40:13] 2025-07-27 20:39:35,509 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:40:13] 2025-07-27 20:39:36,544 | INFO     | job 6747413269 has state=finished
[2025-07-27 16:40:13] 2025-07-27 20:39:36,544 | INFO     | preparing for final server update for job 6747413269 in state='finished'
[2025-07-27 16:40:13] 2025-07-27 20:39:36,545 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:40:13] 2025-07-27 20:39:36,545 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:40:13] 2025-07-27 20:39:36,545 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:40:13] 2025-07-27 20:39:36,545 | INFO     | job 6747413269 has finished - writing final server update
[2025-07-27 16:40:13] 2025-07-27 20:39:36,545 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:40:13] 2025-07-27 20:39:36,546 | INFO     | executing command: lscpu
[2025-07-27 16:40:13] 2025-07-27 20:39:36,611 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:40:13] 2025-07-27 20:39:36,671 | INFO     | monitor loop #321: job 0:6747413269 is in state 'finished'
[2025-07-27 16:40:13] 2025-07-27 20:39:36,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:40:13] 2025-07-27 20:39:38,973 | INFO     | PID=1077045 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 16:40:13] 2025-07-27 20:39:38,974 | INFO     | .. there are 20 such processes running
[2025-07-27 16:40:13] 2025-07-27 20:39:39,175 | INFO     | monitor loop #322: job 0:6747413269 is in state 'finished'
[2025-07-27 16:40:13] 2025-07-27 20:39:39,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:40:13] 2025-07-27 20:39:41,570 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 16:40:13] 2025-07-27 20:39:41,575 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3110.829822916666
[2025-07-27 16:40:13] 2025-07-27 20:39:41,587 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747413269/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:40:13] 2025-07-27 20:39:41,587 | INFO     | extracted standard info from prmon json
[2025-07-27 16:40:13] 2025-07-27 20:39:41,587 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:40:13] 2025-07-27 20:39:41,588 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:40:13] 2025-07-27 20:39:41,588 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:40:13] 2025-07-27 20:39:41,588 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:40:13] 2025-07-27 20:39:41,589 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:40:13] 2025-07-27 20:39:41,589 | INFO     | sum of square deviations: 85136480.0
[2025-07-27 16:40:13] 2025-07-27 20:39:41,589 | INFO     | sum of deviations: -9455102480.000004
[2025-07-27 16:40:13] 2025-07-27 20:39:41,590 | INFO     | mean x: 1753646680.0
[2025-07-27 16:40:13] 2025-07-27 20:39:41,590 | INFO     | mean y: 2359933.0923076924
[2025-07-27 16:40:13] 2025-07-27 20:39:41,590 | INFO     | -- intersect: 194759167744.64117
[2025-07-27 16:40:13] 2025-07-27 20:39:41,590 | INFO     | intersect: 194759167744.64117
[2025-07-27 16:40:13] 2025-07-27 20:39:41,590 | INFO     | chi2: 0.03132356210842259
[2025-07-27 16:40:13] 2025-07-27 20:39:41,590 | INFO     | -- intersect: 194759167744.64117
[2025-07-27 16:40:13] 2025-07-27 20:39:41,590 | INFO     | current memory leak: -111.06 B/s (using 65 data points, chi2=0.03)
[2025-07-27 16:40:13] 2025-07-27 20:39:41,590 | INFO     | could have reported an average CPU frequency of 3116 MHz (6 samples)
[2025-07-27 16:40:13] 2025-07-27 20:39:41,590 | INFO     | ..............................
[2025-07-27 16:40:13] 2025-07-27 20:39:41,591 | INFO     | . Timing measurements:
[2025-07-27 16:40:13] 2025-07-27 20:39:41,591 | INFO     | . get job = 0 s
[2025-07-27 16:40:13] 2025-07-27 20:39:41,591 | INFO     | . initial setup = 2 s
[2025-07-27 16:40:13] 2025-07-27 20:39:41,591 | INFO     | . payload setup = 9 s
[2025-07-27 16:40:13] 2025-07-27 20:39:41,591 | INFO     | . stage-in = 0 s
[2025-07-27 16:40:13] 2025-07-27 20:39:41,591 | INFO     | . payload execution = 4350 s
[2025-07-27 16:40:13] 2025-07-27 20:39:41,591 | INFO     | . stage-out = 0 s
[2025-07-27 16:40:13] 2025-07-27 20:39:41,591 | INFO     | . log creation = 0 s
[2025-07-27 16:40:13] 2025-07-27 20:39:41,591 | INFO     | ..............................
[2025-07-27 16:40:13] 2025-07-27 20:39:41,651 | INFO     | 
[2025-07-27 16:40:13] 2025-07-27 20:39:41,651 | INFO     | job summary report
[2025-07-27 16:40:13] 2025-07-27 20:39:41,651 | INFO     | --------------------------------------------------
[2025-07-27 16:40:13] 2025-07-27 20:39:41,651 | INFO     | PanDA job id: 6747413269
[2025-07-27 16:40:13] 2025-07-27 20:39:41,651 | INFO     | task id: 45743349
[2025-07-27 16:40:13] 2025-07-27 20:39:41,651 | INFO     | errors: (none)
[2025-07-27 16:40:13] 2025-07-27 20:39:41,651 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | pilot state: finished 
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | transexitcode: 0
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | exeerrorcode: 0
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | exeerrordiag: 
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | exitcode: 0
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | exitmsg: OK
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | cpuconsumptiontime: 32449 s
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | nevents: 400
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | neventsw: 0
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | pid: 1084765
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | pgrp: 1084765
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | corecount: 8
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | event service: False
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | sizes: {0: 2397251, 1: 2397450, 7: 2397712, 11: 2397740, 4363: 2423583, 4365: 2432581, 4368: 2432765, 4374: 2432959}
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | --------------------------------------------------
[2025-07-27 16:40:13] 2025-07-27 20:39:41,652 | INFO     | 
[2025-07-27 16:40:13] 2025-07-27 20:39:41,653 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 16:40:13] 2025-07-27 20:39:41,674 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,676 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:40:13] 2025-07-27 20:39:41,676 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,676 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:40:13] 2025-07-27 20:39:41,676 | INFO     | job 6747413269 has completed (purged errors)
[2025-07-27 16:40:13] 2025-07-27 20:39:41,676 | INFO     | overall cleanup function is called
[2025-07-27 16:40:13] 2025-07-27 20:39:42,683 | INFO     | --- collectZombieJob: --- 10, [1084765]
[2025-07-27 16:40:13] 2025-07-27 20:39:42,684 | INFO     | zombie collector waiting for pid 1084765
[2025-07-27 16:40:13] 2025-07-27 20:39:42,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:40:13] 2025-07-27 20:39:42,684 | INFO     | collected zombie processes
[2025-07-27 16:40:13] 2025-07-27 20:39:42,684 | INFO     | will attempt to kill all subprocesses of pid=1084765
[2025-07-27 16:40:13] 2025-07-27 20:39:43,077 | INFO     | process IDs to be killed: [1084765] (in reverse order)
[2025-07-27 16:40:13] 2025-07-27 20:39:43,221 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:40:13] 2025-07-27 20:39:43,221 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:40:13] 2025-07-27 20:39:43,239 | INFO     | did not find any defunct processes belonging to 1084765
[2025-07-27 16:40:13] 2025-07-27 20:39:43,255 | INFO     | did not find any defunct processes belonging to 1084765
[2025-07-27 16:40:13] 2025-07-27 20:39:43,255 | INFO     | ready for new job
[2025-07-27 16:40:13] 2025-07-27 20:39:43,255 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:40:13] 2025-07-27 20:39:43,257 | INFO     | ***************************************
[2025-07-27 16:40:13] 2025-07-27 20:39:43,257 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:40:13] 2025-07-27 20:39:43,257 | INFO     | ***************************************
[2025-07-27 16:40:13] 2025-07-27 20:39:43,257 | INFO     | 
[2025-07-27 16:40:13] 2025-07-27 20:39:43,275 | INFO     | architecture information:
[2025-07-27 16:40:13] 2025-07-27 20:39:43,275 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:40:13] 2025-07-27 20:39:43,296 | INFO     | cat /etc/os-release:
[2025-07-27 16:40:13] NAME="CentOS Linux"
[2025-07-27 16:40:13] VERSION="7 (Core)"
[2025-07-27 16:40:13] ID="centos"
[2025-07-27 16:40:13] ID_LIKE="rhel fedora"
[2025-07-27 16:40:13] VERSION_ID="7"
[2025-07-27 16:40:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:40:13] ANSI_COLOR="0;31"
[2025-07-27 16:40:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:40:13] HOME_URL="https://www.centos.org/"
[2025-07-27 16:40:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:40:13] 
[2025-07-27 16:40:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:40:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:40:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:40:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:40:13] 
[2025-07-27 16:40:13] 2025-07-27 20:39:43,296 | INFO     | ***************************************
[2025-07-27 16:40:13] 2025-07-27 20:39:43,798 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 16:40:13] 2025-07-27 20:39:43,817 | INFO     | sufficient remaining disk space (129044054016 B)
[2025-07-27 16:40:13] 2025-07-27 20:39:43,817 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:40:13] 2025-07-27 20:39:43,818 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:40:13] 2025-07-27 20:39:43,818 | INFO     | update_server=False
[2025-07-27 16:40:13] 2025-07-27 20:39:43,818 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:40:13] 2025-07-27 20:39:43,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:40:13] 2025-07-27 20:39:43,831 | INFO     | all data control threads have been joined
[2025-07-27 16:40:13] 2025-07-27 20:39:44,113 | INFO     | all payload control threads have been joined
[2025-07-27 16:40:13] 2025-07-27 20:39:44,182 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 16:40:13] 2025-07-27 20:39:44,183 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 16:40:13] 2025-07-27 20:39:44,183 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:40:13] 2025-07-27 20:39:44,183 | INFO     | will abort loop
[2025-07-27 16:40:13] 2025-07-27 20:39:44,823 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:44,833 | INFO     | [data] control thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:45,035 | INFO     | all job control threads have been joined
[2025-07-27 16:40:13] 2025-07-27 20:39:45,046 | INFO     | [job] validate thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:45,084 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:45,118 | INFO     | [payload] control thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:45,135 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:45,187 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:45,209 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:45,234 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:45,235 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:45,261 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:45,704 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:45,830 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:46,040 | INFO     | [job] control thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:46,079 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:40:13] 2025-07-27 20:39:46,663 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:40:13] 2025-07-27 20:39:47,667 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:50,085 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:40:13] 2025-07-27 20:39:52,121 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139769595787072)>', '<ExcThread(monitor, started 139768839010048)>']
[2025-07-27 16:40:13] 2025-07-27 20:39:57,145 | INFO     | all workflow threads have been joined
[2025-07-27 16:40:13] 2025-07-27 20:39:57,146 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:40:13] 2025-07-27 20:39:57,146 | INFO     | traces error code: 0
[2025-07-27 16:40:13] 2025-07-27 20:39:57,146 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:40:13] 2025-07-27 20:40:13,522 | INFO     | PID=1077045 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 16:40:13] 2025-07-27 20:40:13,522 | INFO     | .. there are 20 such processes running
[2025-07-27 16:40:13] 2025-07-27 20:40:13,523 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:40:13] 2025-07-27 20:40:13,523 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:40:13] 2025-07-27 20:40:13,523 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:40:13] 2025-07-27 20:40:13,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:40:13] 2025-07-27 20:40:13,523 | INFO     | [monitor] control thread has ended
[2025-07-27 16:40:13] 2025-07-27 20:40:13,615 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:40:13] 2025-07-27 20:40:13,618 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:40:13] 2025-07-27 20:40:13,622 [wrapper] pilotpid: 1077045
[2025-07-27 16:40:13] 2025-07-27 20:40:13,626 [wrapper] Pilot exit status: 0
[2025-07-27 16:40:13] 2025-07-27 20:40:13,638 [wrapper] pandaids: 6747413269
[2025-07-27 16:40:13] 2025-07-27 20:40:13,736 [wrapper] cleanup supervisor_pilot 1354018 1077046
[2025-07-27 16:40:13] 2025-07-27 20:40:13,739 [wrapper] Test setup, not cleaning
[2025-07-27 16:40:13] 2025-07-27 20:40:13,742 [wrapper] apfmon messages muted
[2025-07-27 16:40:13] 2025-07-27 20:40:13,746 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:40:13] 2025-07-27 20:40:13,749 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:40:13]  *** Error codes and diagnostics ***
[2025-07-27 16:40:13]     "exeErrorCode": 0,
[2025-07-27 16:40:13]     "exeErrorDiag": "",
[2025-07-27 16:40:13]     "pilotErrorCode": 0,
[2025-07-27 16:40:13]     "pilotErrorDiag": "",
[2025-07-27 16:40:13]  *** Listing of results directory ***
[2025-07-27 16:40:13] total 352240
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 16:40:13] -rwx------. 1 boincer umatlas     36292 Jul 27 10:29 runpilot2-wrapper.sh
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:29 queuedata.json
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:40:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:26 run_atlas
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:26 job.xml
[2025-07-27 16:40:13] -rw-r--r--. 2 boincer umatlas 147663516 Jul 27 15:26 EVNT.45743347._002783.pool.root.1
[2025-07-27 16:40:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:26 start_atlas.sh
[2025-07-27 16:40:13] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:26 shared
[2025-07-27 16:40:13] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 15:26 input.tar.gz
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:26 boinc_lockfile
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas      2561 Jul 27 15:26 pandaJob.out
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas    980125 Jul 27 15:26 agis_schedconf.cvmfs.json
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:26 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:40:13] drwx------. 4 boincer umatlas      4096 Jul 27 15:26 pilot3
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas      6933 Jul 27 16:30 init_data.xml
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas 207700311 Jul 27 16:39 HITS.45743349._050043.pool.root.1
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas       529 Jul 27 16:39 boinc_task_state.xml
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas      1029 Jul 27 16:39 memory_monitor_summary.json
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas    289561 Jul 27 16:39 log.45743349._050043.job.log.tgz.1
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas      7769 Jul 27 16:39 heartbeat.json
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 16:40 boinc_mmap_file
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas        27 Jul 27 16:40 wrapper_checkpoint.txt
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas       823 Jul 27 16:40 pilotlog.txt
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas        95 Jul 27 16:40 pilot_heartbeat.json
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas    435353 Jul 27 16:40 log.45743349._050043.job.log.1
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas       357 Jul 27 16:40 output.list
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas       620 Jul 27 16:40 runtime_log
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas    747520 Jul 27 16:40 result.tar.gz
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 16:40 runtime_log.err
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas       650 Jul 27 16:40 0M7KDmqYH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYYVLDm5IABom.diag
[2025-07-27 16:40:13] -rw-r--r--. 1 boincer umatlas     22066 Jul 27 16:40 stderr.txt
[2025-07-27 16:40:13] HITS file was successfully produced:
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas 207700311 Jul 27 16:39 shared/HITS.pool.root.1
[2025-07-27 16:40:13]  *** Contents of shared directory: ***
[2025-07-27 16:40:13] total 348324
[2025-07-27 16:40:13] -rw-r--r--. 2 boincer umatlas 147663516 Jul 27 15:26 ATLAS.root_0
[2025-07-27 16:40:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:26 start_atlas.sh
[2025-07-27 16:40:13] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 15:26 input.tar.gz
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas 207700311 Jul 27 16:39 HITS.pool.root.1
[2025-07-27 16:40:13] -rw-------. 1 boincer umatlas    747520 Jul 27 16:40 result.tar.gz
16:40:15 (1073286): run_atlas exited; CPU time 32581.799212
16:40:15 (1073286): called boinc_finish(0)

</stderr_txt>
]]>

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