Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:21:55 (4038036): wrapper (7.7.26015): starting
15:21:55 (4038036): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:21:55] Arguments: --nthreads 8
[2025-07-27 15:21:55] Threads: 8
[2025-07-27 15:21:55] Checking for CVMFS
[2025-07-27 15:21:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:21:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:21:55] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:21:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:21:56] 2.13.1.0 681289 14559 159224 148822 0 140 22602040 40960001 14887 16776704 0 38150863 99.892 20511194 46625 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 15:21:56] CVMFS is ok
[2025-07-27 15:21:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:21:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:21:56] Further information can be found at the LHC@home message board.
[2025-07-27 15:21:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:21:56] Checking for apptainer binary...
[2025-07-27 15:21:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:21:56] Running /usr/bin/apptainer --version
[2025-07-27 15:21:56] apptainer version 1.4.1-1.el9
[2025-07-27 15:21:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:21:56] c-212-14.aglt2.org
[2025-07-27 15:21:56] apptainer works
[2025-07-27 15:21:56] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:21:56] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:21:56] Starting ATLAS job with PandaID=6746125881
[2025-07-27 15:21:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:02:20]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:02:20]  mtime=0
[2025-07-27 17:02:20]  protocol_id=None
[2025-07-27 17:02:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:02:20]  replicas=None
[2025-07-27 17:02:20]  scope=mc23_13p6TeV
[2025-07-27 17:02:20]  status=None
[2025-07-27 17:02:20]  status_code=0
[2025-07-27 17:02:20]  storage_token=
[2025-07-27 17:02:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746125881/log.45759816._000102.job.log.tgz.1
[2025-07-27 17:02:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2a/9e/log.45759816._000102.job.log.tgz.1
[2025-07-27 17:02:20]  workdir=None
[2025-07-27 17:02:20] ]
[2025-07-27 17:02:20] 2025-07-27 21:01:38,333 | INFO     | transferring file log.45759816._000102.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746125881/log.45759816._000102.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:02:20] 2025-07-27 21:01:38,333 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746125881/log.45759816._000102.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759816._000102.job
[2025-07-27 17:02:20] 2025-07-27 21:01:38,353 | INFO     | adding to output.list: log.45759816._000102.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2a/9e/log.45759816._000102.job.log.tg
[2025-07-27 17:02:20] 2025-07-27 21:01:38,354 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:02:20] 2025-07-27 21:01:38,354 | INFO     | summary of transferred files:
[2025-07-27 17:02:20] 2025-07-27 21:01:38,354 | INFO     |  -- lfn=log.45759816._000102.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:02:20] 2025-07-27 21:01:38,354 | INFO     | stage-out finished correctly
[2025-07-27 17:02:20] 2025-07-27 21:01:40,878 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:02:20] 2025-07-27 21:01:41,250 | WARNING  | process 4048270 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 17:02:20] 2025-07-27 21:01:41,251 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746125881/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:02:20] 2025-07-27 21:01:41,605 | INFO     | number of running child processes to parent process 4048270: 1
[2025-07-27 17:02:20] 2025-07-27 21:01:41,605 | INFO     | maximum number of monitored processes: 6
[2025-07-27 17:02:20] 2025-07-27 21:01:42,900 | INFO     | job 6746125881 has state=finished
[2025-07-27 17:02:20] 2025-07-27 21:01:42,900 | INFO     | preparing for final server update for job 6746125881 in state='finished'
[2025-07-27 17:02:20] 2025-07-27 21:01:42,901 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:02:20] 2025-07-27 21:01:42,901 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:02:20] 2025-07-27 21:01:42,901 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:02:20] 2025-07-27 21:01:42,901 | INFO     | job 6746125881 has finished - writing final server update
[2025-07-27 17:02:20] 2025-07-27 21:01:42,901 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:02:20] 2025-07-27 21:01:42,902 | INFO     | executing command: lscpu
[2025-07-27 17:02:20] 2025-07-27 21:01:42,970 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:02:20] 2025-07-27 21:01:44,108 | INFO     | monitor loop #433: job 0:6746125881 is in state 'finished'
[2025-07-27 17:02:20] 2025-07-27 21:01:44,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:02:20] 2025-07-27 21:01:46,611 | INFO     | monitor loop #434: job 0:6746125881 is in state 'finished'
[2025-07-27 17:02:20] 2025-07-27 21:01:46,611 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:02:20] 2025-07-27 21:01:47,082 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 17:02:20] 2025-07-27 21:01:47,088 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3040.7591874999994
[2025-07-27 17:02:20] 2025-07-27 21:01:47,103 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746125881/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:02:20] 2025-07-27 21:01:47,103 | INFO     | extracted standard info from prmon json
[2025-07-27 17:02:20] 2025-07-27 21:01:47,104 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:02:20] 2025-07-27 21:01:47,104 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:02:20] 2025-07-27 21:01:47,104 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:02:20] 2025-07-27 21:01:47,104 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:02:20] 2025-07-27 21:01:47,106 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:02:20] 2025-07-27 21:01:47,106 | INFO     | sum of square deviations: 233641590.0
[2025-07-27 17:02:20] 2025-07-27 21:01:47,107 | INFO     | sum of deviations: -11625045110.000008
[2025-07-27 17:02:20] 2025-07-27 21:01:47,107 | INFO     | mean x: 1753647217.0
[2025-07-27 17:02:20] 2025-07-27 21:01:47,107 | INFO     | mean y: 2634883.835164835
[2025-07-27 17:02:20] 2025-07-27 21:01:47,107 | INFO     | -- intersect: 87256911849.8966
[2025-07-27 17:02:20] 2025-07-27 21:01:47,107 | INFO     | intersect: 87256911849.8966
[2025-07-27 17:02:20] 2025-07-27 21:01:47,107 | INFO     | chi2: 0.044547085749352254
[2025-07-27 17:02:20] 2025-07-27 21:01:47,107 | INFO     | -- intersect: 87256911849.8966
[2025-07-27 17:02:20] 2025-07-27 21:01:47,107 | INFO     | current memory leak: -49.76 B/s (using 91 data points, chi2=0.04)
[2025-07-27 17:02:20] 2025-07-27 21:01:47,108 | INFO     | could have reported an average CPU frequency of 2999 MHz (7 samples)
[2025-07-27 17:02:20] 2025-07-27 21:01:47,108 | INFO     | ..............................
[2025-07-27 17:02:20] 2025-07-27 21:01:47,108 | INFO     | . Timing measurements:
[2025-07-27 17:02:20] 2025-07-27 21:01:47,108 | INFO     | . get job = 0 s
[2025-07-27 17:02:20] 2025-07-27 21:01:47,108 | INFO     | . initial setup = 2 s
[2025-07-27 17:02:20] 2025-07-27 21:01:47,108 | INFO     | . payload setup = 9 s
[2025-07-27 17:02:20] 2025-07-27 21:01:47,108 | INFO     | . stage-in = 0 s
[2025-07-27 17:02:20] 2025-07-27 21:01:47,108 | INFO     | . payload execution = 5934 s
[2025-07-27 17:02:20] 2025-07-27 21:01:47,108 | INFO     | . stage-out = 0 s
[2025-07-27 17:02:20] 2025-07-27 21:01:47,108 | INFO     | . log creation = 0 s
[2025-07-27 17:02:20] 2025-07-27 21:01:47,108 | INFO     | ..............................
[2025-07-27 17:02:20] 2025-07-27 21:01:47,184 | INFO     | 
[2025-07-27 17:02:20] 2025-07-27 21:01:47,187 | INFO     | job summary report
[2025-07-27 17:02:20] 2025-07-27 21:01:47,191 | INFO     | --------------------------------------------------
[2025-07-27 17:02:20] 2025-07-27 21:01:47,191 | INFO     | PanDA job id: 6746125881
[2025-07-27 17:02:20] 2025-07-27 21:01:47,191 | INFO     | task id: 45759816
[2025-07-27 17:02:20] 2025-07-27 21:01:47,191 | INFO     | errors: (none)
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | pilot state: finished 
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | transexitcode: 0
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | exeerrorcode: 0
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | exeerrordiag: 
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | exitcode: 0
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | exitmsg: OK
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | cpuconsumptiontime: 43837 s
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | nevents: 400
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | neventsw: 0
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | pid: 4048270
[2025-07-27 17:02:20] 2025-07-27 21:01:47,192 | INFO     | pgrp: 4048270
[2025-07-27 17:02:20] 2025-07-27 21:01:47,193 | INFO     | corecount: 8
[2025-07-27 17:02:20] 2025-07-27 21:01:47,193 | INFO     | event service: False
[2025-07-27 17:02:20] 2025-07-27 21:01:47,193 | INFO     | sizes: {0: 2397463, 7: 2397725, 11: 2397753, 5949: 2433486, 5952: 2433486, 5958: 2433680}
[2025-07-27 17:02:20] 2025-07-27 21:01:47,193 | INFO     | --------------------------------------------------
[2025-07-27 17:02:20] 2025-07-27 21:01:47,193 | INFO     | 
[2025-07-27 17:02:20] 2025-07-27 21:01:47,193 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:02:20] 2025-07-27 21:01:47,227 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,227 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,227 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,227 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,227 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,227 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,227 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,227 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | job 6746125881 has completed (purged errors)
[2025-07-27 17:02:20] 2025-07-27 21:01:47,228 | INFO     | overall cleanup function is called
[2025-07-27 17:02:20] 2025-07-27 21:01:48,236 | INFO     | --- collectZombieJob: --- 10, [4048270]
[2025-07-27 17:02:20] 2025-07-27 21:01:48,236 | INFO     | zombie collector waiting for pid 4048270
[2025-07-27 17:02:20] 2025-07-27 21:01:48,236 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:02:20] 2025-07-27 21:01:48,236 | INFO     | collected zombie processes
[2025-07-27 17:02:20] 2025-07-27 21:01:48,236 | INFO     | will attempt to kill all subprocesses of pid=4048270
[2025-07-27 17:02:20] 2025-07-27 21:01:48,679 | INFO     | process IDs to be killed: [4048270] (in reverse order)
[2025-07-27 17:02:20] 2025-07-27 21:01:48,791 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:02:20] 2025-07-27 21:01:48,791 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:02:20] 2025-07-27 21:01:48,804 | INFO     | did not find any defunct processes belonging to 4048270
[2025-07-27 17:02:20] 2025-07-27 21:01:48,814 | INFO     | did not find any defunct processes belonging to 4048270
[2025-07-27 17:02:20] 2025-07-27 21:01:48,814 | INFO     | ready for new job
[2025-07-27 17:02:20] 2025-07-27 21:01:48,815 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:02:20] 2025-07-27 21:01:48,817 | INFO     | ***************************************
[2025-07-27 17:02:20] 2025-07-27 21:01:48,817 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:02:20] 2025-07-27 21:01:48,818 | INFO     | ***************************************
[2025-07-27 17:02:20] 2025-07-27 21:01:48,818 | INFO     | 
[2025-07-27 17:02:20] 2025-07-27 21:01:48,844 | INFO     | architecture information:
[2025-07-27 17:02:20] 2025-07-27 21:01:48,847 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:02:20] 2025-07-27 21:01:48,873 | INFO     | cat /etc/os-release:
[2025-07-27 17:02:20] NAME="CentOS Linux"
[2025-07-27 17:02:20] VERSION="7 (Core)"
[2025-07-27 17:02:20] ID="centos"
[2025-07-27 17:02:20] ID_LIKE="rhel fedora"
[2025-07-27 17:02:20] VERSION_ID="7"
[2025-07-27 17:02:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:02:20] ANSI_COLOR="0;31"
[2025-07-27 17:02:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:02:20] HOME_URL="https://www.centos.org/"
[2025-07-27 17:02:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:02:20] 
[2025-07-27 17:02:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:02:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:02:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:02:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:02:20] 
[2025-07-27 17:02:20] 2025-07-27 21:01:48,873 | INFO     | ***************************************
[2025-07-27 17:02:20] 2025-07-27 21:01:49,378 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:02:20] 2025-07-27 21:01:49,401 | INFO     | sufficient remaining disk space (129002110976 B)
[2025-07-27 17:02:20] 2025-07-27 21:01:49,401 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:02:20] 2025-07-27 21:01:49,402 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:02:20] 2025-07-27 21:01:49,402 | INFO     | update_server=False
[2025-07-27 17:02:20] 2025-07-27 21:01:49,402 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:02:20] 2025-07-27 21:01:49,402 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:02:20] 2025-07-27 21:01:49,598 | INFO     | all payload control threads have been joined
[2025-07-27 17:02:20] 2025-07-27 21:01:49,762 | INFO     | all job control threads have been joined
[2025-07-27 17:02:20] 2025-07-27 21:01:49,789 | INFO     | all data control threads have been joined
[2025-07-27 17:02:20] 2025-07-27 21:01:50,119 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:02:20] 2025-07-27 21:01:50,119 | INFO     | aborting loop
[2025-07-27 17:02:20] 2025-07-27 21:01:50,407 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:50,603 | INFO     | [payload] control thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:50,750 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:50,767 | INFO     | [job] control thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:50,794 | INFO     | [data] control thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:50,813 | INFO     | [job] validate thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:51,008 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:51,124 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:51,156 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:51,173 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:51,407 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:51,451 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:02:20] 2025-07-27 21:01:51,582 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:51,601 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:51,913 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:52,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:02:20] 2025-07-27 21:01:53,202 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:55,456 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:02:20] 2025-07-27 21:01:56,042 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140369598908224)>', '<ExcThread(monitor, started 140369077442304)>']
[2025-07-27 17:02:20] 2025-07-27 21:02:01,067 | INFO     | all workflow threads have been joined
[2025-07-27 17:02:20] 2025-07-27 21:02:01,067 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:02:20] 2025-07-27 21:02:01,067 | INFO     | traces error code: 0
[2025-07-27 17:02:20] 2025-07-27 21:02:01,067 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:02:20] 2025-07-27 21:02:20,226 | INFO     | PID=4041623 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:02:20] 2025-07-27 21:02:20,228 | INFO     | .. there are 15 such processes running
[2025-07-27 17:02:20] 2025-07-27 21:02:20,229 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:02:20] 2025-07-27 21:02:20,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:02:20] 2025-07-27 21:02:20,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:02:20] 2025-07-27 21:02:20,229 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:02:20] 2025-07-27 21:02:20,229 | INFO     | [monitor] control thread has ended
[2025-07-27 17:02:20] 2025-07-27 21:02:20,314 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:02:20] 2025-07-27 21:02:20,316 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:02:20] 2025-07-27 21:02:20,318 [wrapper] pilotpid: 4041623
[2025-07-27 17:02:20] 2025-07-27 21:02:20,320 [wrapper] Pilot exit status: 0
[2025-07-27 17:02:20] 2025-07-27 21:02:20,334 [wrapper] pandaids: 6746125881
[2025-07-27 17:02:20] 2025-07-27 21:02:20,411 [wrapper] cleanup supervisor_pilot   38766 4041624
[2025-07-27 17:02:20] 2025-07-27 21:02:20,415 [wrapper] Test setup, not cleaning
[2025-07-27 17:02:20] 2025-07-27 21:02:20,418 [wrapper] apfmon messages muted
[2025-07-27 17:02:20] 2025-07-27 21:02:20,423 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:02:20] 2025-07-27 21:02:20,427 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:02:20]  *** Error codes and diagnostics ***
[2025-07-27 17:02:20]     "exeErrorCode": 0,
[2025-07-27 17:02:20]     "exeErrorDiag": "",
[2025-07-27 17:02:20]     "pilotErrorCode": 0,
[2025-07-27 17:02:20]     "pilotErrorDiag": "",
[2025-07-27 17:02:20]  *** Listing of results directory ***
[2025-07-27 17:02:20] total 408840
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 01:26 pilot3.tar.gz
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 01:33 queuedata.json
[2025-07-27 17:02:20] -rwx------. 1 boincer umatlas     36292 Jul 27 01:35 runpilot2-wrapper.sh
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:02:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:21 run_atlas
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:21 job.xml
[2025-07-27 17:02:20] -rw-r--r--. 2 boincer umatlas 237883845 Jul 27 15:21 EVNT.45759813._000005.pool.root.1
[2025-07-27 17:02:20] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:21 start_atlas.sh
[2025-07-27 17:02:20] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:21 shared
[2025-07-27 17:02:20] -rw-r--r--. 2 boincer umatlas    542878 Jul 27 15:21 input.tar.gz
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:21 boinc_lockfile
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas      2555 Jul 27 15:21 pandaJob.out
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas    980125 Jul 27 15:22 agis_schedconf.cvmfs.json
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:22 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:02:20] drwx------. 4 boincer umatlas      4096 Jul 27 15:22 pilot3
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas      6944 Jul 27 16:56 init_data.xml
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas 175151136 Jul 27 17:01 HITS.45759816._000102.pool.root.1
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:01 boinc_task_state.xml
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas      1032 Jul 27 17:01 memory_monitor_summary.json
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas    302700 Jul 27 17:01 log.45759816._000102.job.log.tgz.1
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas      7763 Jul 27 17:01 heartbeat.json
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:02 boinc_mmap_file
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:02 wrapper_checkpoint.txt
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas       823 Jul 27 17:02 pilotlog.txt
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas        95 Jul 27 17:02 pilot_heartbeat.json
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas    568657 Jul 27 17:02 log.45759816._000102.job.log.1
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas       357 Jul 27 17:02 output.list
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:02 runtime_log
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas    890880 Jul 27 17:02 result.tar.gz
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 17:02 runtime_log.err
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas       652 Jul 27 17:02 45WNDmrD9z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKNULDmCkmcsm.diag
[2025-07-27 17:02:20] -rw-r--r--. 1 boincer umatlas     21750 Jul 27 17:02 stderr.txt
[2025-07-27 17:02:20] HITS file was successfully produced:
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas 175151136 Jul 27 17:01 shared/HITS.pool.root.1
[2025-07-27 17:02:20]  *** Contents of shared directory: ***
[2025-07-27 17:02:20] total 404784
[2025-07-27 17:02:20] -rw-r--r--. 2 boincer umatlas 237883845 Jul 27 15:21 ATLAS.root_0
[2025-07-27 17:02:20] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:21 start_atlas.sh
[2025-07-27 17:02:20] -rw-r--r--. 2 boincer umatlas    542878 Jul 27 15:21 input.tar.gz
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas 175151136 Jul 27 17:01 HITS.pool.root.1
[2025-07-27 17:02:20] -rw-------. 1 boincer umatlas    890880 Jul 27 17:02 result.tar.gz
17:02:21 (4038036): run_atlas exited; CPU time 44019.038550
17:02:21 (4038036): called boinc_finish(0)

</stderr_txt>
]]>

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