Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:15:00 (3982323): wrapper (7.7.26015): starting
17:15:00 (3982323): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 17:15:00] Arguments: --nthreads 12
[2025-07-27 17:15:00] Threads: 12
[2025-07-27 17:15:00] Checking for CVMFS
[2025-07-27 17:15:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:15:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:15:00] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:15:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:15:01] 2.13.0.0 1889558 18892 326052 148823 0 569 27379182 40960000 9727 16776704 1 53280460 99.812 43878615 29236 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 17:15:01] CVMFS is ok
[2025-07-27 17:15:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:15:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:15:01] Further information can be found at the LHC@home message board.
[2025-07-27 17:15:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:15:01] Checking for apptainer binary...
[2025-07-27 17:15:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:15:01] Running /usr/bin/apptainer --version
[2025-07-27 17:15:01] apptainer version 1.4.1-1.el9
[2025-07-27 17:15:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:15:01] c6-5-7-1.aglt2.org
[2025-07-27 17:15:01] apptainer works
[2025-07-27 17:15:01] Set ATHENA_PROC_NUMBER=12
[2025-07-27 17:15:01] Set ATHENA_CORE_NUMBER=12
[2025-07-27 17:15:01] Starting ATLAS job with PandaID=6747376136
[2025-07-27 17:15:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:50:23]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:50:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:50:23]  replicas=None
[2025-07-27 18:50:23]  scope=mc23_13p6TeV
[2025-07-27 18:50:23]  status=None
[2025-07-27 18:50:23]  status_code=0
[2025-07-27 18:50:23]  storage_token=
[2025-07-27 18:50:23]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747376136/log.45743349._047371.job.log.tgz.1
[2025-07-27 18:50:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/6e/log.45743349._047371.job.log.tgz.1
[2025-07-27 18:50:23]  workdir=None
[2025-07-27 18:50:23] ]
[2025-07-27 18:50:23] 2025-07-27 22:49:42,281 | INFO     | transferring file log.45743349._047371.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747376136/log.45743349._047371.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 18:50:23] 2025-07-27 22:49:42,281 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747376136/log.45743349._047371.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._047371.job
[2025-07-27 18:50:23] 2025-07-27 22:49:42,307 | INFO     | adding to output.list: log.45743349._047371.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/6e/log.45743349._047371.job.log.tg
[2025-07-27 18:50:23] 2025-07-27 22:49:42,308 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:50:23] 2025-07-27 22:49:42,308 | INFO     | summary of transferred files:
[2025-07-27 18:50:23] 2025-07-27 22:49:42,308 | INFO     |  -- lfn=log.45743349._047371.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:50:23] 2025-07-27 22:49:42,309 | INFO     | stage-out finished correctly
[2025-07-27 18:50:23] 2025-07-27 22:49:42,401 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:50:23] 2025-07-27 22:49:42,519 | INFO     | job 6747376136 has state=finished
[2025-07-27 18:50:23] 2025-07-27 22:49:42,520 | INFO     | preparing for final server update for job 6747376136 in state='finished'
[2025-07-27 18:50:23] 2025-07-27 22:49:42,592 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 18:50:23] 2025-07-27 22:49:42,592 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:50:23] 2025-07-27 22:49:42,592 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:50:23] 2025-07-27 22:49:42,592 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:50:23] 2025-07-27 22:49:42,592 | INFO     | job 6747376136 has finished - writing final server update
[2025-07-27 18:50:23] 2025-07-27 22:49:42,592 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:50:23] 2025-07-27 22:49:42,593 | INFO     | executing command: lscpu
[2025-07-27 18:50:23] 2025-07-27 22:49:42,640 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:50:23] 2025-07-27 22:49:43,292 | WARNING  | process 3993476 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 18:50:23] 2025-07-27 22:49:43,294 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747376136/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:50:23] 2025-07-27 22:49:43,610 | INFO     | number of running child processes to parent process 3993476: 1
[2025-07-27 18:50:23] 2025-07-27 22:49:43,610 | INFO     | maximum number of monitored processes: 6
[2025-07-27 18:50:23] 2025-07-27 22:49:46,117 | INFO     | monitor loop #402: job 0:6747376136 is in state 'finished'
[2025-07-27 18:50:23] 2025-07-27 22:49:46,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:50:23] 2025-07-27 22:49:48,614 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 18:50:23] 2025-07-27 22:49:48,623 | INFO     | monitor loop #403: job 0:6747376136 is in state 'finished'
[2025-07-27 18:50:23] 2025-07-27 22:49:48,623 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:50:23] 2025-07-27 22:49:48,626 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2593.716982142858
[2025-07-27 18:50:23] 2025-07-27 22:49:48,640 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747376136/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:50:23] 2025-07-27 22:49:48,641 | INFO     | extracted standard info from prmon json
[2025-07-27 18:50:23] 2025-07-27 22:49:48,641 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:50:23] 2025-07-27 22:49:48,641 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:50:23] 2025-07-27 22:49:48,642 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:50:23] 2025-07-27 22:49:48,642 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:50:23] 2025-07-27 22:49:48,645 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:50:23] 2025-07-27 22:49:48,645 | INFO     | sum of square deviations: 197220171.31395346
[2025-07-27 18:50:23] 2025-07-27 22:49:48,646 | INFO     | sum of deviations: -20807296716.127903
[2025-07-27 18:50:23] 2025-07-27 22:49:48,646 | INFO     | mean x: 1753653847.5465117
[2025-07-27 18:50:23] 2025-07-27 22:49:48,646 | INFO     | mean y: 2565360.406976744
[2025-07-27 18:50:23] 2025-07-27 22:49:48,646 | INFO     | -- intersect: 185018102565.23642
[2025-07-27 18:50:23] 2025-07-27 22:49:48,646 | INFO     | intersect: 185018102565.23642
[2025-07-27 18:50:23] 2025-07-27 22:49:48,646 | INFO     | chi2: 0.25482723251716183
[2025-07-27 18:50:23] 2025-07-27 22:49:48,646 | INFO     | -- intersect: 185018102565.23642
[2025-07-27 18:50:23] 2025-07-27 22:49:48,646 | INFO     | current memory leak: -105.50 B/s (using 86 data points, chi2=0.25)
[2025-07-27 18:50:23] 2025-07-27 22:49:48,647 | INFO     | could have reported an average CPU frequency of 2696 MHz (7 samples)
[2025-07-27 18:50:23] 2025-07-27 22:49:48,647 | INFO     | ..............................
[2025-07-27 18:50:23] 2025-07-27 22:49:48,647 | INFO     | . Timing measurements:
[2025-07-27 18:50:23] 2025-07-27 22:49:48,647 | INFO     | . get job = 0 s
[2025-07-27 18:50:23] 2025-07-27 22:49:48,647 | INFO     | . initial setup = 2 s
[2025-07-27 18:50:23] 2025-07-27 22:49:48,647 | INFO     | . payload setup = 9 s
[2025-07-27 18:50:23] 2025-07-27 22:49:48,648 | INFO     | . stage-in = 0 s
[2025-07-27 18:50:23] 2025-07-27 22:49:48,648 | INFO     | . payload execution = 5633 s
[2025-07-27 18:50:23] 2025-07-27 22:49:48,648 | INFO     | . stage-out = 0 s
[2025-07-27 18:50:23] 2025-07-27 22:49:48,648 | INFO     | . log creation = 0 s
[2025-07-27 18:50:23] 2025-07-27 22:49:48,648 | INFO     | ..............................
[2025-07-27 18:50:23] 2025-07-27 22:49:49,226 | INFO     | 
[2025-07-27 18:50:23] 2025-07-27 22:49:49,226 | INFO     | job summary report
[2025-07-27 18:50:23] 2025-07-27 22:49:49,226 | INFO     | --------------------------------------------------
[2025-07-27 18:50:23] 2025-07-27 22:49:49,227 | INFO     | PanDA job id: 6747376136
[2025-07-27 18:50:23] 2025-07-27 22:49:49,227 | INFO     | task id: 45743349
[2025-07-27 18:50:23] 2025-07-27 22:49:49,227 | INFO     | errors: (none)
[2025-07-27 18:50:23] 2025-07-27 22:49:49,227 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:50:23] 2025-07-27 22:49:49,227 | INFO     | pilot state: finished 
[2025-07-27 18:50:23] 2025-07-27 22:49:49,227 | INFO     | transexitcode: 0
[2025-07-27 18:50:23] 2025-07-27 22:49:49,227 | INFO     | exeerrorcode: 0
[2025-07-27 18:50:23] 2025-07-27 22:49:49,227 | INFO     | exeerrordiag: 
[2025-07-27 18:50:23] 2025-07-27 22:49:49,227 | INFO     | exitcode: 0
[2025-07-27 18:50:23] 2025-07-27 22:49:49,227 | INFO     | exitmsg: OK
[2025-07-27 18:50:23] 2025-07-27 22:49:49,227 | INFO     | cpuconsumptiontime: 49586 s
[2025-07-27 18:50:23] 2025-07-27 22:49:49,228 | INFO     | nevents: 400
[2025-07-27 18:50:23] 2025-07-27 22:49:49,228 | INFO     | neventsw: 0
[2025-07-27 18:50:23] 2025-07-27 22:49:49,228 | INFO     | pid: 3993476
[2025-07-27 18:50:23] 2025-07-27 22:49:49,228 | INFO     | pgrp: 3993476
[2025-07-27 18:50:23] 2025-07-27 22:49:49,228 | INFO     | corecount: 12
[2025-07-27 18:50:23] 2025-07-27 22:49:49,228 | INFO     | event service: False
[2025-07-27 18:50:23] 2025-07-27 22:49:49,228 | INFO     | sizes: {0: 2397475, 8: 2397737, 11: 2397765, 5647: 2424326, 5649: 2433380, 5656: 2433518}
[2025-07-27 18:50:23] 2025-07-27 22:49:49,228 | INFO     | --------------------------------------------------
[2025-07-27 18:50:23] 2025-07-27 22:49:49,228 | INFO     | 
[2025-07-27 18:50:23] 2025-07-27 22:49:49,228 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 18:50:23] 2025-07-27 22:49:49,255 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,255 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,256 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,257 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,257 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,257 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,259 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:50:23] 2025-07-27 22:49:49,259 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,259 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:50:23] 2025-07-27 22:49:49,259 | INFO     | job 6747376136 has completed (purged errors)
[2025-07-27 18:50:23] 2025-07-27 22:49:49,259 | INFO     | overall cleanup function is called
[2025-07-27 18:50:23] 2025-07-27 22:49:50,268 | INFO     | --- collectZombieJob: --- 10, [3993476]
[2025-07-27 18:50:23] 2025-07-27 22:49:50,269 | INFO     | zombie collector waiting for pid 3993476
[2025-07-27 18:50:23] 2025-07-27 22:49:50,269 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:50:23] 2025-07-27 22:49:50,269 | INFO     | collected zombie processes
[2025-07-27 18:50:23] 2025-07-27 22:49:50,269 | INFO     | will attempt to kill all subprocesses of pid=3993476
[2025-07-27 18:50:23] 2025-07-27 22:49:50,559 | INFO     | process IDs to be killed: [3993476] (in reverse order)
[2025-07-27 18:50:23] 2025-07-27 22:49:50,689 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:50:23] 2025-07-27 22:49:50,690 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:50:23] 2025-07-27 22:49:50,702 | INFO     | did not find any defunct processes belonging to 3993476
[2025-07-27 18:50:23] 2025-07-27 22:49:50,714 | INFO     | did not find any defunct processes belonging to 3993476
[2025-07-27 18:50:23] 2025-07-27 22:49:50,715 | INFO     | ready for new job
[2025-07-27 18:50:23] 2025-07-27 22:49:50,715 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:50:23] 2025-07-27 22:49:50,717 | INFO     | ***************************************
[2025-07-27 18:50:23] 2025-07-27 22:49:50,717 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:50:23] 2025-07-27 22:49:50,718 | INFO     | ***************************************
[2025-07-27 18:50:23] 2025-07-27 22:49:50,718 | INFO     | 
[2025-07-27 18:50:23] 2025-07-27 22:49:50,734 | INFO     | architecture information:
[2025-07-27 18:50:23] 2025-07-27 22:49:50,735 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:50:23] 2025-07-27 22:49:50,754 | INFO     | cat /etc/os-release:
[2025-07-27 18:50:23] NAME="CentOS Linux"
[2025-07-27 18:50:23] VERSION="7 (Core)"
[2025-07-27 18:50:23] ID="centos"
[2025-07-27 18:50:23] ID_LIKE="rhel fedora"
[2025-07-27 18:50:23] VERSION_ID="7"
[2025-07-27 18:50:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:50:23] ANSI_COLOR="0;31"
[2025-07-27 18:50:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:50:23] HOME_URL="https://www.centos.org/"
[2025-07-27 18:50:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:50:23] 
[2025-07-27 18:50:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:50:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:50:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:50:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:50:23] 
[2025-07-27 18:50:23] 2025-07-27 22:49:50,755 | INFO     | ***************************************
[2025-07-27 18:50:23] 2025-07-27 22:49:51,257 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 18:50:23] 2025-07-27 22:49:51,281 | INFO     | sufficient remaining disk space (71258079232 B)
[2025-07-27 18:50:23] 2025-07-27 22:49:51,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:50:23] 2025-07-27 22:49:51,282 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:50:23] 2025-07-27 22:49:51,284 | INFO     | update_server=False
[2025-07-27 18:50:23] 2025-07-27 22:49:51,284 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:50:23] 2025-07-27 22:49:51,285 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:50:23] 2025-07-27 22:49:51,791 | INFO     | all job control threads have been joined
[2025-07-27 18:50:23] 2025-07-27 22:49:52,079 | INFO     | all data control threads have been joined
[2025-07-27 18:50:23] 2025-07-27 22:49:52,131 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:50:23] 2025-07-27 22:49:52,132 | INFO     | aborting loop
[2025-07-27 18:50:23] 2025-07-27 22:49:52,289 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:52,368 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:52,384 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:52,391 | INFO     | all payload control threads have been joined
[2025-07-27 18:50:23] 2025-07-27 22:49:52,573 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:52,797 | INFO     | [job] control thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:52,885 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:53,031 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:50:23] 2025-07-27 22:49:53,033 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:53,084 | INFO     | [data] control thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:53,138 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:53,156 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:53,291 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:53,398 | INFO     | [payload] control thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:53,548 | INFO     | [job] validate thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:53,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:50:23] 2025-07-27 22:49:54,773 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:49:57,038 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:50:01,466 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:50:23] 2025-07-27 22:50:02,472 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:50:23] 2025-07-27 22:50:04,512 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140351749175104)>', '<ExcThread(monitor, started 140351117444864)>']
[2025-07-27 18:50:23] 2025-07-27 22:50:09,538 | INFO     | all workflow threads have been joined
[2025-07-27 18:50:23] 2025-07-27 22:50:09,538 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:50:23] 2025-07-27 22:50:09,538 | INFO     | traces error code: 0
[2025-07-27 18:50:23] 2025-07-27 22:50:09,539 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:50:23] 2025-07-27 22:50:22,652 | INFO     | PID=3986275 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:50:23] 2025-07-27 22:50:22,653 | INFO     | .. there are 17 such processes running
[2025-07-27 18:50:23] 2025-07-27 22:50:22,654 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:50:23] 2025-07-27 22:50:22,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:50:23] 2025-07-27 22:50:22,654 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:50:23] 2025-07-27 22:50:22,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:50:23] 2025-07-27 22:50:22,655 | INFO     | [monitor] control thread has ended
[2025-07-27 18:50:23] 2025-07-27 22:50:22,939 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:50:23] 2025-07-27 22:50:22,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:50:23] 2025-07-27 22:50:22,947 [wrapper] pilotpid: 3986275
[2025-07-27 18:50:23] 2025-07-27 22:50:22,951 [wrapper] Pilot exit status: 0
[2025-07-27 18:50:23] 2025-07-27 22:50:22,966 [wrapper] pandaids: 6747376136
[2025-07-27 18:50:23] 2025-07-27 22:50:23,053 [wrapper] cleanup supervisor_pilot  141615 3986276
[2025-07-27 18:50:23] 2025-07-27 22:50:23,057 [wrapper] Test setup, not cleaning
[2025-07-27 18:50:23] 2025-07-27 22:50:23,060 [wrapper] apfmon messages muted
[2025-07-27 18:50:23] 2025-07-27 22:50:23,064 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:50:23] 2025-07-27 22:50:23,067 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:50:23]  *** Error codes and diagnostics ***
[2025-07-27 18:50:23]     "exeErrorCode": 0,
[2025-07-27 18:50:23]     "exeErrorDiag": "",
[2025-07-27 18:50:23]     "pilotErrorCode": 0,
[2025-07-27 18:50:23]     "pilotErrorDiag": "",
[2025-07-27 18:50:23]  *** Listing of results directory ***
[2025-07-27 18:50:23] total 354108
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 06:53 pilot3.tar.gz
[2025-07-27 18:50:23] -rwx------. 1 boincer umatlas     36292 Jul 27 06:59 runpilot2-wrapper.sh
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 06:59 queuedata.json
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:50:23] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:15 run_atlas
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:15 job.xml
[2025-07-27 18:50:23] -rw-r--r--. 2 boincer umatlas 145265674 Jul 27 17:15 EVNT.45743347._002632.pool.root.1
[2025-07-27 18:50:23] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:15 start_atlas.sh
[2025-07-27 18:50:23] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:15 shared
[2025-07-27 18:50:23] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 17:15 input.tar.gz
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:15 boinc_lockfile
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 17:15 pandaJob.out
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas    980109 Jul 27 17:15 agis_schedconf.cvmfs.json
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:15 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:50:23] drwx------. 4 boincer umatlas      4096 Jul 27 17:15 pilot3
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas      6839 Jul 27 18:46 init_data.xml
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas 211621679 Jul 27 18:49 HITS.45743349._047371.pool.root.1
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas       529 Jul 27 18:49 boinc_task_state.xml
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas      1048 Jul 27 18:49 memory_monitor_summary.json
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas    378639 Jul 27 18:49 log.45743349._047371.job.log.tgz.1
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas      7818 Jul 27 18:49 heartbeat.json
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:50 boinc_mmap_file
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas        27 Jul 27 18:50 wrapper_checkpoint.txt
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas        95 Jul 27 18:50 pilot_heartbeat.json
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas       823 Jul 27 18:50 pilotlog.txt
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas    541314 Jul 27 18:50 log.45743349._047371.job.log.1
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas       357 Jul 27 18:50 output.list
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:50 runtime_log
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas    942080 Jul 27 18:50 result.tar.gz
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 18:50 runtime_log.err
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas       653 Jul 27 18:50 bbXMDmPHE07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmU5ULDmFx8QHn.diag
[2025-07-27 18:50:23] -rw-r--r--. 1 boincer umatlas     21917 Jul 27 18:50 stderr.txt
[2025-07-27 18:50:23] HITS file was successfully produced:
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas 211621679 Jul 27 18:49 shared/HITS.pool.root.1
[2025-07-27 18:50:23]  *** Contents of shared directory: ***
[2025-07-27 18:50:23] total 350000
[2025-07-27 18:50:23] -rw-r--r--. 2 boincer umatlas 145265674 Jul 27 17:15 ATLAS.root_0
[2025-07-27 18:50:23] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:15 start_atlas.sh
[2025-07-27 18:50:23] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 17:15 input.tar.gz
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas 211621679 Jul 27 18:49 HITS.pool.root.1
[2025-07-27 18:50:23] -rw-------. 1 boincer umatlas    942080 Jul 27 18:50 result.tar.gz
18:50:24 (3982323): run_atlas exited; CPU time 49657.549318
18:50:24 (3982323): called boinc_finish(0)

</stderr_txt>
]]>

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