Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:15:44 (676824): wrapper (7.7.26015): starting
09:15:44 (676824): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 09:15:44] Arguments: --nthreads 6
[2025-07-28 09:15:44] Threads: 6
[2025-07-28 09:15:44] Checking for CVMFS
[2025-07-28 09:15:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 09:15:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 09:15:44] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 09:15:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 09:15:49] 2.11.5.0 2646 1061 69872 148829 0 57 29525529 52428801 0 130560 0 1858850 99.996 35773 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://134.75.124.122:3128 0
[2025-07-28 09:15:49] CVMFS is ok
[2025-07-28 09:15:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 09:15:49] Checking for apptainer binary...
[2025-07-28 09:15:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 09:15:49] Running /usr/bin/apptainer --version
[2025-07-28 09:15:49] apptainer version 1.3.6-1.el9
[2025-07-28 09:15:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 09:15:49] testio002
[2025-07-28 09:15:49] apptainer works
[2025-07-28 09:15:49] Set ATHENA_PROC_NUMBER=6
[2025-07-28 09:15:49] Set ATHENA_CORE_NUMBER=6
[2025-07-28 09:15:49] Starting ATLAS job with PandaID=6747412690
[2025-07-28 09:15:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 10:39:22]  *** The last 200 lines of the pilot log: ***
[2025-07-28 10:39:22] 2025-07-28 01:37:30,620 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 10:39:22] 2025-07-28 01:37:30,620 | INFO     | summary of transferred files:
[2025-07-28 10:39:22] 2025-07-28 01:37:30,620 | INFO     |  -- lfn=log.45743349._049610.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 10:39:22] 2025-07-28 01:37:30,620 | INFO     | stage-out finished correctly
[2025-07-28 10:39:22] 2025-07-28 01:37:31,016 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 10:39:22] 2025-07-28 01:37:31,552 | INFO     | job 6747412690 has state=finished
[2025-07-28 10:39:22] 2025-07-28 01:37:31,552 | INFO     | preparing for final server update for job 6747412690 in state='finished'
[2025-07-28 10:39:22] 2025-07-28 01:37:31,553 | INFO     | this job has now completed (state=finished)
[2025-07-28 10:39:22] 2025-07-28 01:37:31,553 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 10:39:22] 2025-07-28 01:37:31,553 | INFO     | log transfer has been attempted: DONE
[2025-07-28 10:39:22] 2025-07-28 01:37:31,553 | INFO     | job 6747412690 has finished - writing final server update
[2025-07-28 10:39:22] 2025-07-28 01:37:31,553 | INFO     | total number of processed events: 400 (read)
[2025-07-28 10:39:22] 2025-07-28 01:37:31,553 | INFO     | executing command: lscpu
[2025-07-28 10:39:22] 2025-07-28 01:37:31,560 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 10:39:22] 2025-07-28 01:37:32,609 | WARNING  | process 692863 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 10:39:22] 2025-07-28 01:37:32,609 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6747412690/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 10:39:22] 2025-07-28 01:37:32,610 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6747412690/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 10:39:22] 2025-07-28 01:37:32,610 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2928841 B
[2025-07-28 10:39:22] 2025-07-28 01:37:32,610 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15303 B
[2025-07-28 10:39:22] 2025-07-28 01:37:32,610 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-07-28 10:39:22] 2025-07-28 01:37:48,133 | INFO     | PID=684178 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 10:39:22] 2025-07-28 01:37:48,133 | INFO     | .. there are 2 such processes running
[2025-07-28 10:39:22] 2025-07-28 01:38:10,229 | INFO     | PID=684178 has CPU usage=0.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 10:39:22] 2025-07-28 01:38:10,229 | INFO     | .. there are 2 such processes running
[2025-07-28 10:39:22] 2025-07-28 01:38:25,265 | INFO     | 4954s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-28 10:39:22] 2025-07-28 01:38:32,322 | INFO     | PID=684178 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 10:39:22] 2025-07-28 01:38:32,322 | INFO     | .. there are 2 such processes running
[2025-07-28 10:39:22] 2025-07-28 01:38:51,022 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 10:39:22] 2025-07-28 01:38:51,024 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4400.1245625
[2025-07-28 10:39:22] 2025-07-28 01:38:51,025 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6747412690/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 10:39:22] 2025-07-28 01:38:51,026 | INFO     | extracted standard info from prmon json
[2025-07-28 10:39:22] 2025-07-28 01:38:51,026 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 10:39:22] 2025-07-28 01:38:51,026 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 10:39:22] 2025-07-28 01:38:51,026 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 10:39:22] 2025-07-28 01:38:51,026 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | fitting pss+swap vs Time
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | sum of square deviations: 120605052.0
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | sum of deviations: 9909577428.999998
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | mean x: 1753664271.0
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | mean y: 2481004.821917808
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | -- intersect: -144088264695.8253
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | intersect: -144088264695.8253
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | chi2: 1.5549025574073287
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | -- intersect: -144088264695.8253
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | current memory leak: 82.17 B/s (using 73 data points, chi2=1.55)
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | sufficient remaining disk space (315206139904 B)
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-28 10:39:22] 2025-07-28 01:38:51,027 | INFO     | could have reported an average CPU frequency of 4242 MHz (6 samples)
[2025-07-28 10:39:22] 2025-07-28 01:38:51,028 | INFO     | ..............................
[2025-07-28 10:39:22] 2025-07-28 01:38:51,028 | INFO     | . Timing measurements:
[2025-07-28 10:39:22] 2025-07-28 01:38:51,028 | INFO     | . get job = 0 s
[2025-07-28 10:39:22] 2025-07-28 01:38:51,028 | INFO     | . initial setup = 4 s
[2025-07-28 10:39:22] 2025-07-28 01:38:51,028 | INFO     | . payload setup = 1 s
[2025-07-28 10:39:22] 2025-07-28 01:38:51,028 | INFO     | . stage-in = 0 s
[2025-07-28 10:39:22] 2025-07-28 01:38:51,028 | INFO     | . payload execution = 4878 s
[2025-07-28 10:39:22] 2025-07-28 01:38:51,028 | INFO     | . stage-out = 0 s
[2025-07-28 10:39:22] 2025-07-28 01:38:51,028 | INFO     | . log creation = 0 s
[2025-07-28 10:39:22] 2025-07-28 01:38:51,028 | INFO     | ..............................
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | 
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | job summary report
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | --------------------------------------------------
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | PanDA job id: 6747412690
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | task id: 45743349
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | errors: (none)
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | pilot state: finished 
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | transexitcode: 0
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | exeerrorcode: 0
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | exeerrordiag: 
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | exitcode: 0
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | exitmsg: OK
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | cpuconsumptiontime: 24784 s
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | nevents: 400
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | neventsw: 0
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | pid: 692863
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | pgrp: 692863
[2025-07-28 10:39:22] 2025-07-28 01:38:51,055 | INFO     | corecount: 6
[2025-07-28 10:39:22] 2025-07-28 01:38:51,056 | INFO     | event service: False
[2025-07-28 10:39:22] 2025-07-28 01:38:51,056 | INFO     | sizes: {0: 2397475, 1: 2397737, 11: 2397765, 4883: 2433059, 4884: 2433059, 4964: 2433253}
[2025-07-28 10:39:22] 2025-07-28 01:38:51,056 | INFO     | --------------------------------------------------
[2025-07-28 10:39:22] 2025-07-28 01:38:51,056 | INFO     | 
[2025-07-28 10:39:22] 2025-07-28 01:38:51,056 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-07-28 10:39:22] 2025-07-28 01:38:51,057 | INFO     | size of work directory /var/lib/boinc/slots/2/PanDA_Pilot-6747412690: 3226097 B (within 2537553920 B limit)
[2025-07-28 10:39:22] 2025-07-28 01:38:51,057 | INFO     | pfn file=/var/lib/boinc/slots/2/PanDA_Pilot-6747412690/HITS.45743349._049610.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-28 10:39:22] 2025-07-28 01:38:51,058 | INFO     | total size of present files: 0 B (workdir size: 3226097 B)
[2025-07-28 10:39:22] 2025-07-28 01:38:51,058 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/2/PanDA_Pilot-6747412690/HITS.45743349._049610.pool.root.1 since it does not exist
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,062 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,063 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,063 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 10:39:22] 2025-07-28 01:38:51,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,063 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 10:39:22] 2025-07-28 01:38:51,063 | INFO     | job 6747412690 has completed (purged errors)
[2025-07-28 10:39:22] 2025-07-28 01:38:51,063 | INFO     | overall cleanup function is called
[2025-07-28 10:39:22] 2025-07-28 01:38:51,097 | INFO     | number of running child processes to parent process 692863: 1
[2025-07-28 10:39:22] 2025-07-28 01:38:51,097 | INFO     | maximum number of monitored processes: 6
[2025-07-28 10:39:22] 2025-07-28 01:38:51,097 | INFO     | aborting job monitoring since job object (job id=6747412690) has expired
[2025-07-28 10:39:22] 2025-07-28 01:38:52,069 | INFO     | --- collectZombieJob: --- 10, [692863]
[2025-07-28 10:39:22] 2025-07-28 01:38:52,069 | INFO     | zombie collector waiting for pid 692863
[2025-07-28 10:39:22] 2025-07-28 01:38:52,069 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 10:39:22] 2025-07-28 01:38:52,069 | INFO     | collected zombie processes
[2025-07-28 10:39:22] 2025-07-28 01:38:52,069 | INFO     | will attempt to kill all subprocesses of pid=692863
[2025-07-28 10:39:22] 2025-07-28 01:38:52,098 | INFO     | process IDs to be killed: [692863] (in reverse order)
[2025-07-28 10:39:22] 2025-07-28 01:38:52,110 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 10:39:22] 2025-07-28 01:38:52,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 10:39:22] 2025-07-28 01:38:52,111 | INFO     | did not find any defunct processes belonging to 692863
[2025-07-28 10:39:22] 2025-07-28 01:38:52,112 | INFO     | did not find any defunct processes belonging to 692863
[2025-07-28 10:39:22] 2025-07-28 01:38:52,112 | INFO     | ready for new job
[2025-07-28 10:39:22] 2025-07-28 01:38:52,112 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 10:39:22] 2025-07-28 01:38:52,113 | INFO     | ***************************************
[2025-07-28 10:39:22] 2025-07-28 01:38:52,113 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 10:39:22] 2025-07-28 01:38:52,113 | INFO     | ***************************************
[2025-07-28 10:39:22] 2025-07-28 01:38:52,113 | INFO     | 
[2025-07-28 10:39:22] 2025-07-28 01:38:52,113 | INFO     | architecture information:
[2025-07-28 10:39:22] 2025-07-28 01:38:52,113 | INFO     | executing command: cat /etc/os-release
[2025-07-28 10:39:22] 2025-07-28 01:38:52,117 | INFO     | cat /etc/os-release:
[2025-07-28 10:39:22] NAME="CentOS Linux"
[2025-07-28 10:39:22] VERSION="7 (Core)"
[2025-07-28 10:39:22] ID="centos"
[2025-07-28 10:39:22] ID_LIKE="rhel fedora"
[2025-07-28 10:39:22] VERSION_ID="7"
[2025-07-28 10:39:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 10:39:22] ANSI_COLOR="0;31"
[2025-07-28 10:39:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 10:39:22] HOME_URL="https://www.centos.org/"
[2025-07-28 10:39:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 10:39:22] 
[2025-07-28 10:39:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 10:39:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 10:39:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 10:39:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 10:39:22] 
[2025-07-28 10:39:22] 2025-07-28 01:38:52,117 | INFO     | ***************************************
[2025-07-28 10:39:22] 2025-07-28 01:38:52,620 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-07-28 10:39:22] 2025-07-28 01:38:52,625 | INFO     | sufficient remaining disk space (315214528512 B)
[2025-07-28 10:39:22] 2025-07-28 01:38:52,626 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 10:39:22] 2025-07-28 01:38:52,626 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 10:39:22] 2025-07-28 01:38:52,626 | INFO     | update_server=False
[2025-07-28 10:39:22] 2025-07-28 01:38:52,626 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 10:39:22] 2025-07-28 01:38:52,626 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 10:39:22] 2025-07-28 01:38:52,626 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 10:39:22] 2025-07-28 01:38:52,626 | INFO     | aborting loop
[2025-07-28 10:39:22] 2025-07-28 01:38:52,963 | INFO     | all data control threads have been joined
[2025-07-28 10:39:22] 2025-07-28 01:38:53,314 | INFO     | all job control threads have been joined
[2025-07-28 10:39:22] 2025-07-28 01:38:53,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 10:39:22] 2025-07-28 01:38:53,611 | INFO     | all payload control threads have been joined
[2025-07-28 10:39:22] 2025-07-28 01:38:53,631 | INFO     | [job] job monitor thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:53,631 | INFO     | [job] retrieve thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:53,631 | INFO     | [job] queue monitor thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:53,727 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 10:39:22] 2025-07-28 01:38:53,775 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:53,812 | INFO     | [data] copytool_in thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:53,966 | INFO     | [data] control thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:54,177 | INFO     | [job] validate thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:54,204 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:54,253 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:54,320 | INFO     | [job] control thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:54,543 | INFO     | [payload] validate_post thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:54,617 | INFO     | [payload] control thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:54,644 | INFO     | [payload] failed_post thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:55,732 | INFO     | [data] copytool_out thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:38:57,598 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:39:02,727 | INFO     | job.realtimelogging is not enabled
[2025-07-28 10:39:22] 2025-07-28 01:39:03,732 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 10:39:22] 2025-07-28 01:39:05,682 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139901182834496)>', '<ExcThread(monitor, started 139900674356992)>']
[2025-07-28 10:39:22] 2025-07-28 01:39:10,707 | INFO     | all workflow threads have been joined
[2025-07-28 10:39:22] 2025-07-28 01:39:10,707 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 10:39:22] 2025-07-28 01:39:10,707 | INFO     | traces error code: 0
[2025-07-28 10:39:22] 2025-07-28 01:39:10,708 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 10:39:22] 2025-07-28 01:39:22,476 | INFO     | PID=684178 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 10:39:22] 2025-07-28 01:39:22,476 | INFO     | .. there are 2 such processes running
[2025-07-28 10:39:22] 2025-07-28 01:39:22,476 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 10:39:22] 2025-07-28 01:39:22,476 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 10:39:22] 2025-07-28 01:39:22,476 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 10:39:22] 2025-07-28 01:39:22,477 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 10:39:22] 2025-07-28 01:39:22,477 | INFO     | [monitor] control thread has ended
[2025-07-28 10:39:22] 2025-07-28 01:39:22,514 [wrapper] ==== pilot stdout END ====
[2025-07-28 10:39:22] 2025-07-28 01:39:22,515 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 10:39:22] 2025-07-28 01:39:22,515 [wrapper] pilotpid: 684178
[2025-07-28 10:39:22] 2025-07-28 01:39:22,516 [wrapper] Pilot exit status: 0
[2025-07-28 10:39:22] 2025-07-28 01:39:22,519 [wrapper] pandaids: 6747412690
[2025-07-28 10:39:22] 2025-07-28 01:39:22,525 [wrapper] cleanup supervisor_pilot  719770 684179
[2025-07-28 10:39:22] 2025-07-28 01:39:22,526 [wrapper] Test setup, not cleaning
[2025-07-28 10:39:22] 2025-07-28 01:39:22,527 [wrapper] apfmon messages muted
[2025-07-28 10:39:22] 2025-07-28 01:39:22,528 [wrapper] ==== wrapper stdout END ====
[2025-07-28 10:39:22] 2025-07-28 01:39:22,528 [wrapper] ==== wrapper stderr END ====
[2025-07-28 10:39:22]  *** Error codes and diagnostics ***
[2025-07-28 10:39:22]     "exeErrorCode": 0,
[2025-07-28 10:39:22]     "exeErrorDiag": "",
[2025-07-28 10:39:22]     "pilotErrorCode": 0,
[2025-07-28 10:39:22]     "pilotErrorDiag": "",
[2025-07-28 10:39:22]  *** Listing of results directory ***
[2025-07-28 10:39:22] total 428368
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc    530466 Jul 27 22:42 pilot3.tar.gz
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc      5112 Jul 27 23:04 queuedata.json
[2025-07-28 10:39:22] -rwx------. 1 boinc boinc     36292 Jul 27 23:06 runpilot2-wrapper.sh
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc       100 Jul 28 09:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 10:39:22] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 09:15 run_atlas
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc       105 Jul 28 09:15 job.xml
[2025-07-28 10:39:22] -rw-r--r--. 2 boinc boinc     15095 Jul 28 09:15 start_atlas.sh
[2025-07-28 10:39:22] drwxrwx--x. 2 boinc boinc        68 Jul 28 09:15 shared
[2025-07-28 10:39:22] -rw-r--r--. 2 boinc boinc    542899 Jul 28 09:15 input.tar.gz
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc      9627 Jul 28 09:15 init_data.xml
[2025-07-28 10:39:22] -rw-r--r--. 2 boinc boinc 228737137 Jul 28 09:15 EVNT.45743347._002735.pool.root.1
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc         0 Jul 28 09:15 boinc_lockfile
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc      2563 Jul 28 09:15 pandaJob.out
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc    980125 Jul 28 09:15 agis_schedconf.cvmfs.json
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc   1593052 Jul 28 09:15 agis_ddmendpoints.agis.ALL.json
[2025-07-28 10:39:22] drwx------. 4 boinc boinc      4096 Jul 28 09:15 pilot3
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc 204521768 Jul 28 10:37 HITS.45743349._049610.pool.root.1
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc      1026 Jul 28 10:37 memory_monitor_summary.json
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc       529 Jul 28 10:37 boinc_task_state.xml
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc    276556 Jul 28 10:37 log.45743349._049610.job.log.tgz.1
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc      7796 Jul 28 10:38 heartbeat.json
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc      8192 Jul 28 10:38 boinc_mmap_file
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc        27 Jul 28 10:38 wrapper_checkpoint.txt
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc       821 Jul 28 10:39 pilotlog.txt
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc        95 Jul 28 10:39 pilot_heartbeat.json
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc    483939 Jul 28 10:39 log.45743349._049610.job.log.1
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc       357 Jul 28 10:39 output.list
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc       620 Jul 28 10:39 runtime_log
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc    778240 Jul 28 10:39 result.tar.gz
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc       642 Jul 28 10:39 TMiNDmfCH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMTVLDmi8vVLn.diag
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc      8618 Jul 28 10:39 runtime_log.err
[2025-07-28 10:39:22] -rw-r--r--. 1 boinc boinc     22316 Jul 28 10:39 stderr.txt
[2025-07-28 10:39:22] HITS file was successfully produced:
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc 204521768 Jul 28 10:37 shared/HITS.pool.root.1
[2025-07-28 10:39:22]  *** Contents of shared directory: ***
[2025-07-28 10:39:22] total 424420
[2025-07-28 10:39:22] -rw-r--r--. 2 boinc boinc     15095 Jul 28 09:15 start_atlas.sh
[2025-07-28 10:39:22] -rw-r--r--. 2 boinc boinc    542899 Jul 28 09:15 input.tar.gz
[2025-07-28 10:39:22] -rw-r--r--. 2 boinc boinc 228737137 Jul 28 09:15 ATLAS.root_0
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc 204521768 Jul 28 10:37 HITS.pool.root.1
[2025-07-28 10:39:22] -rw-------. 1 boinc boinc    778240 Jul 28 10:39 result.tar.gz
10:39:23 (676824): run_atlas exited; CPU time 24810.879542
10:39:23 (676824): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN